rb-gsl 1.15.3.1
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- checksums.yaml +7 -0
- data/AUTHORS +6 -0
- data/COPYING +339 -0
- data/ChangeLog +567 -0
- data/README +32 -0
- data/Rakefile +99 -0
- data/THANKS +17 -0
- data/VERSION +1 -0
- data/examples/alf/alf.gp +15 -0
- data/examples/alf/alf.rb +32 -0
- data/examples/blas/blas.rb +13 -0
- data/examples/blas/dnrm2.rb +16 -0
- data/examples/blas/level1.rb +81 -0
- data/examples/blas/level2.rb +11 -0
- data/examples/blas/level3.rb +12 -0
- data/examples/bspline.rb +57 -0
- data/examples/cdf.rb +16 -0
- data/examples/cheb.rb +21 -0
- data/examples/combination.rb +23 -0
- data/examples/complex/RC-lpf.rb +47 -0
- data/examples/complex/add.rb +36 -0
- data/examples/complex/coerce.rb +14 -0
- data/examples/complex/complex.rb +25 -0
- data/examples/complex/fpmi.rb +70 -0
- data/examples/complex/functions.rb +77 -0
- data/examples/complex/michelson.rb +36 -0
- data/examples/complex/mul.rb +28 -0
- data/examples/complex/oscillator.rb +17 -0
- data/examples/complex/set.rb +37 -0
- data/examples/const/physconst.rb +151 -0
- data/examples/const/travel.rb +45 -0
- data/examples/deriv/demo.rb +13 -0
- data/examples/deriv/deriv.rb +36 -0
- data/examples/deriv/diff.rb +35 -0
- data/examples/dht.rb +42 -0
- data/examples/dirac.rb +56 -0
- data/examples/eigen/eigen.rb +34 -0
- data/examples/eigen/herm.rb +22 -0
- data/examples/eigen/narray.rb +9 -0
- data/examples/eigen/nonsymm.rb +37 -0
- data/examples/eigen/nonsymmv.rb +43 -0
- data/examples/eigen/qhoscillator.gp +35 -0
- data/examples/eigen/qhoscillator.rb +90 -0
- data/examples/eigen/vander.rb +41 -0
- data/examples/fft/fft.rb +17 -0
- data/examples/fft/fft2.rb +17 -0
- data/examples/fft/forward.rb +25 -0
- data/examples/fft/forward2.rb +26 -0
- data/examples/fft/radix2.rb +18 -0
- data/examples/fft/real-halfcomplex.rb +33 -0
- data/examples/fft/real-halfcomplex2.rb +30 -0
- data/examples/fft/realradix2.rb +19 -0
- data/examples/fft/sunspot.dat +256 -0
- data/examples/fft/sunspot.rb +16 -0
- data/examples/fit/expdata.dat +20 -0
- data/examples/fit/expfit.rb +31 -0
- data/examples/fit/gaussfit.rb +29 -0
- data/examples/fit/gaussian_2peaks.rb +34 -0
- data/examples/fit/hillfit.rb +40 -0
- data/examples/fit/lognormal.rb +26 -0
- data/examples/fit/lorentzfit.rb +22 -0
- data/examples/fit/multifit.rb +72 -0
- data/examples/fit/ndlinear.rb +133 -0
- data/examples/fit/nonlinearfit.rb +89 -0
- data/examples/fit/plot.gp +36 -0
- data/examples/fit/polyfit.rb +9 -0
- data/examples/fit/powerfit.rb +21 -0
- data/examples/fit/sigmoidfit.rb +40 -0
- data/examples/fit/sinfit.rb +22 -0
- data/examples/fit/wlinear.rb +46 -0
- data/examples/fresnel.rb +11 -0
- data/examples/function/function.rb +36 -0
- data/examples/function/log.rb +7 -0
- data/examples/function/min.rb +33 -0
- data/examples/function/sin.rb +10 -0
- data/examples/function/synchrotron.rb +18 -0
- data/examples/gallery/butterfly.rb +7 -0
- data/examples/gallery/cayley.rb +12 -0
- data/examples/gallery/cornu.rb +23 -0
- data/examples/gallery/eight.rb +11 -0
- data/examples/gallery/koch.rb +40 -0
- data/examples/gallery/lemniscate.rb +11 -0
- data/examples/gallery/polar.rb +11 -0
- data/examples/gallery/rgplot/cossin.rb +35 -0
- data/examples/gallery/rgplot/rgplot.replaced +0 -0
- data/examples/gallery/rgplot/roesller.rb +55 -0
- data/examples/gallery/roesller.rb +39 -0
- data/examples/gallery/scarabaeus.rb +14 -0
- data/examples/histogram/cauchy.rb +27 -0
- data/examples/histogram/cauchy.sh +2 -0
- data/examples/histogram/exponential.rb +19 -0
- data/examples/histogram/gauss.rb +16 -0
- data/examples/histogram/gsl-histogram.rb +40 -0
- data/examples/histogram/histo2d.rb +31 -0
- data/examples/histogram/histo3d.rb +34 -0
- data/examples/histogram/histogram-pdf.rb +27 -0
- data/examples/histogram/histogram.rb +26 -0
- data/examples/histogram/integral.rb +28 -0
- data/examples/histogram/poisson.rb +27 -0
- data/examples/histogram/power.rb +25 -0
- data/examples/histogram/rebin.rb +17 -0
- data/examples/histogram/smp.dat +5 -0
- data/examples/histogram/xexp.rb +21 -0
- data/examples/integration/ahmed.rb +21 -0
- data/examples/integration/cosmology.rb +75 -0
- data/examples/integration/friedmann.gp +16 -0
- data/examples/integration/friedmann.rb +35 -0
- data/examples/integration/gamma-zeta.rb +35 -0
- data/examples/integration/integration.rb +22 -0
- data/examples/integration/qag.rb +8 -0
- data/examples/integration/qag2.rb +14 -0
- data/examples/integration/qag3.rb +8 -0
- data/examples/integration/qagi.rb +28 -0
- data/examples/integration/qagi2.rb +49 -0
- data/examples/integration/qagiu.rb +29 -0
- data/examples/integration/qagp.rb +20 -0
- data/examples/integration/qags.rb +14 -0
- data/examples/integration/qawc.rb +18 -0
- data/examples/integration/qawf.rb +41 -0
- data/examples/integration/qawo.rb +29 -0
- data/examples/integration/qaws.rb +30 -0
- data/examples/integration/qng.rb +17 -0
- data/examples/interp/demo.gp +20 -0
- data/examples/interp/demo.rb +45 -0
- data/examples/interp/interp.rb +37 -0
- data/examples/interp/points +10 -0
- data/examples/interp/spline.rb +20 -0
- data/examples/jacobi/deriv.rb +40 -0
- data/examples/jacobi/integrate.rb +34 -0
- data/examples/jacobi/interp.rb +43 -0
- data/examples/jacobi/jacobi.rb +11 -0
- data/examples/linalg/HH.rb +15 -0
- data/examples/linalg/HH_narray.rb +13 -0
- data/examples/linalg/LQ_solve.rb +73 -0
- data/examples/linalg/LU.rb +84 -0
- data/examples/linalg/LU2.rb +31 -0
- data/examples/linalg/LU_narray.rb +24 -0
- data/examples/linalg/PTLQ.rb +47 -0
- data/examples/linalg/QR.rb +18 -0
- data/examples/linalg/QRPT.rb +47 -0
- data/examples/linalg/QR_solve.rb +78 -0
- data/examples/linalg/QR_solve_narray.rb +13 -0
- data/examples/linalg/SV.rb +16 -0
- data/examples/linalg/SV_narray.rb +12 -0
- data/examples/linalg/SV_solve.rb +49 -0
- data/examples/linalg/chol.rb +29 -0
- data/examples/linalg/chol_narray.rb +15 -0
- data/examples/linalg/complex.rb +57 -0
- data/examples/linalg/invert_narray.rb +10 -0
- data/examples/math/const.rb +67 -0
- data/examples/math/elementary.rb +35 -0
- data/examples/math/functions.rb +41 -0
- data/examples/math/inf_nan.rb +34 -0
- data/examples/math/minmax.rb +22 -0
- data/examples/math/power.rb +18 -0
- data/examples/math/test.rb +31 -0
- data/examples/matrix/a.dat +0 -0
- data/examples/matrix/add.rb +45 -0
- data/examples/matrix/b.dat +4 -0
- data/examples/matrix/cat.rb +31 -0
- data/examples/matrix/colvectors.rb +24 -0
- data/examples/matrix/complex.rb +41 -0
- data/examples/matrix/det.rb +29 -0
- data/examples/matrix/diagonal.rb +23 -0
- data/examples/matrix/get_all.rb +159 -0
- data/examples/matrix/hilbert.rb +31 -0
- data/examples/matrix/iterator.rb +19 -0
- data/examples/matrix/matrix.rb +57 -0
- data/examples/matrix/minmax.rb +53 -0
- data/examples/matrix/mul.rb +39 -0
- data/examples/matrix/rand.rb +20 -0
- data/examples/matrix/read.rb +29 -0
- data/examples/matrix/rowcol.rb +47 -0
- data/examples/matrix/set.rb +41 -0
- data/examples/matrix/set_all.rb +100 -0
- data/examples/matrix/view.rb +32 -0
- data/examples/matrix/view_all.rb +148 -0
- data/examples/matrix/write.rb +23 -0
- data/examples/min.rb +29 -0
- data/examples/monte/miser.rb +47 -0
- data/examples/monte/monte.rb +47 -0
- data/examples/monte/plain.rb +47 -0
- data/examples/monte/vegas.rb +46 -0
- data/examples/multimin/bundle.rb +66 -0
- data/examples/multimin/cqp.rb +109 -0
- data/examples/multimin/fdfminimizer.rb +40 -0
- data/examples/multimin/fminimizer.rb +41 -0
- data/examples/multiroot/demo.rb +36 -0
- data/examples/multiroot/fdfsolver.rb +50 -0
- data/examples/multiroot/fsolver.rb +33 -0
- data/examples/multiroot/fsolver2.rb +32 -0
- data/examples/multiroot/fsolver3.rb +26 -0
- data/examples/narray/histogram.rb +14 -0
- data/examples/narray/mandel.rb +27 -0
- data/examples/narray/narray.rb +28 -0
- data/examples/narray/narray2.rb +44 -0
- data/examples/narray/sf.rb +26 -0
- data/examples/ntuple/create.rb +17 -0
- data/examples/ntuple/project.rb +31 -0
- data/examples/odeiv/binarysystem.gp +23 -0
- data/examples/odeiv/binarysystem.rb +104 -0
- data/examples/odeiv/demo.gp +24 -0
- data/examples/odeiv/demo.rb +69 -0
- data/examples/odeiv/demo2.gp +26 -0
- data/examples/odeiv/duffing.rb +45 -0
- data/examples/odeiv/frei1.rb +109 -0
- data/examples/odeiv/frei2.rb +76 -0
- data/examples/odeiv/legendre.rb +52 -0
- data/examples/odeiv/odeiv.rb +32 -0
- data/examples/odeiv/odeiv2.rb +45 -0
- data/examples/odeiv/oscillator.rb +42 -0
- data/examples/odeiv/sedov.rb +97 -0
- data/examples/odeiv/whitedwarf.gp +40 -0
- data/examples/odeiv/whitedwarf.rb +158 -0
- data/examples/ool/conmin.rb +100 -0
- data/examples/ool/gencan.rb +99 -0
- data/examples/ool/pgrad.rb +100 -0
- data/examples/ool/spg.rb +100 -0
- data/examples/pdf/bernoulli.rb +5 -0
- data/examples/pdf/beta.rb +7 -0
- data/examples/pdf/binomiral.rb +10 -0
- data/examples/pdf/cauchy.rb +6 -0
- data/examples/pdf/chisq.rb +8 -0
- data/examples/pdf/exponential.rb +7 -0
- data/examples/pdf/exppow.rb +6 -0
- data/examples/pdf/fdist.rb +7 -0
- data/examples/pdf/flat.rb +7 -0
- data/examples/pdf/gamma.rb +8 -0
- data/examples/pdf/gauss-tail.rb +5 -0
- data/examples/pdf/gauss.rb +6 -0
- data/examples/pdf/geometric.rb +5 -0
- data/examples/pdf/gumbel.rb +6 -0
- data/examples/pdf/hypergeometric.rb +11 -0
- data/examples/pdf/landau.rb +5 -0
- data/examples/pdf/laplace.rb +7 -0
- data/examples/pdf/logarithmic.rb +5 -0
- data/examples/pdf/logistic.rb +6 -0
- data/examples/pdf/lognormal.rb +6 -0
- data/examples/pdf/neg-binomiral.rb +10 -0
- data/examples/pdf/pareto.rb +7 -0
- data/examples/pdf/pascal.rb +10 -0
- data/examples/pdf/poisson.rb +5 -0
- data/examples/pdf/rayleigh-tail.rb +6 -0
- data/examples/pdf/rayleigh.rb +6 -0
- data/examples/pdf/tdist.rb +6 -0
- data/examples/pdf/weibull.rb +8 -0
- data/examples/permutation/ex1.rb +22 -0
- data/examples/permutation/permutation.rb +16 -0
- data/examples/poly/bell.rb +6 -0
- data/examples/poly/bessel.rb +6 -0
- data/examples/poly/cheb.rb +6 -0
- data/examples/poly/cheb_II.rb +6 -0
- data/examples/poly/cubic.rb +9 -0
- data/examples/poly/demo.rb +20 -0
- data/examples/poly/eval.rb +28 -0
- data/examples/poly/eval_derivs.rb +14 -0
- data/examples/poly/fit.rb +21 -0
- data/examples/poly/hermite.rb +6 -0
- data/examples/poly/poly.rb +13 -0
- data/examples/poly/quadratic.rb +25 -0
- data/examples/random/diffusion.rb +34 -0
- data/examples/random/gaussian.rb +9 -0
- data/examples/random/generator.rb +27 -0
- data/examples/random/hdsobol.rb +21 -0
- data/examples/random/poisson.rb +9 -0
- data/examples/random/qrng.rb +19 -0
- data/examples/random/randomwalk.rb +37 -0
- data/examples/random/randomwalk2d.rb +19 -0
- data/examples/random/rayleigh.rb +36 -0
- data/examples/random/rng.rb +33 -0
- data/examples/random/rngextra.rb +14 -0
- data/examples/roots/bisection.rb +25 -0
- data/examples/roots/brent.rb +43 -0
- data/examples/roots/demo.rb +30 -0
- data/examples/roots/newton.rb +46 -0
- data/examples/roots/recombination.gp +12 -0
- data/examples/roots/recombination.rb +61 -0
- data/examples/roots/steffenson.rb +48 -0
- data/examples/sf/ShiChi.rb +6 -0
- data/examples/sf/SiCi.rb +6 -0
- data/examples/sf/airy_Ai.rb +8 -0
- data/examples/sf/airy_Bi.rb +8 -0
- data/examples/sf/bessel_IK.rb +12 -0
- data/examples/sf/bessel_JY.rb +13 -0
- data/examples/sf/beta_inc.rb +9 -0
- data/examples/sf/clausen.rb +6 -0
- data/examples/sf/dawson.rb +5 -0
- data/examples/sf/debye.rb +9 -0
- data/examples/sf/dilog.rb +6 -0
- data/examples/sf/ellint.rb +6 -0
- data/examples/sf/expint.rb +8 -0
- data/examples/sf/fermi.rb +10 -0
- data/examples/sf/gamma_inc_P.rb +9 -0
- data/examples/sf/gegenbauer.rb +8 -0
- data/examples/sf/hyperg.rb +7 -0
- data/examples/sf/laguerre.rb +19 -0
- data/examples/sf/lambertW.rb +5 -0
- data/examples/sf/legendre_P.rb +10 -0
- data/examples/sf/lngamma.rb +5 -0
- data/examples/sf/psi.rb +54 -0
- data/examples/sf/sphbessel.gp +27 -0
- data/examples/sf/sphbessel.rb +30 -0
- data/examples/sf/synchrotron.rb +5 -0
- data/examples/sf/transport.rb +10 -0
- data/examples/sf/zetam1.rb +5 -0
- data/examples/siman.rb +44 -0
- data/examples/sort/heapsort.rb +23 -0
- data/examples/sort/heapsort_vector_complex.rb +21 -0
- data/examples/sort/sort.rb +23 -0
- data/examples/sort/sort2.rb +16 -0
- data/examples/stats/mean.rb +17 -0
- data/examples/stats/statistics.rb +18 -0
- data/examples/stats/test.rb +9 -0
- data/examples/sum.rb +34 -0
- data/examples/tamu_anova.rb +18 -0
- data/examples/vector/a.dat +0 -0
- data/examples/vector/add.rb +56 -0
- data/examples/vector/b.dat +4 -0
- data/examples/vector/c.dat +3 -0
- data/examples/vector/collect.rb +26 -0
- data/examples/vector/compare.rb +28 -0
- data/examples/vector/complex.rb +51 -0
- data/examples/vector/complex_get_all.rb +85 -0
- data/examples/vector/complex_set_all.rb +131 -0
- data/examples/vector/complex_view_all.rb +77 -0
- data/examples/vector/connect.rb +22 -0
- data/examples/vector/decimate.rb +38 -0
- data/examples/vector/diff.rb +31 -0
- data/examples/vector/filescan.rb +17 -0
- data/examples/vector/floor.rb +23 -0
- data/examples/vector/get_all.rb +82 -0
- data/examples/vector/gnuplot.rb +38 -0
- data/examples/vector/graph.rb +28 -0
- data/examples/vector/histogram.rb +22 -0
- data/examples/vector/linspace.rb +24 -0
- data/examples/vector/log.rb +17 -0
- data/examples/vector/logic.rb +33 -0
- data/examples/vector/logspace.rb +25 -0
- data/examples/vector/minmax.rb +47 -0
- data/examples/vector/mul.rb +49 -0
- data/examples/vector/narray.rb +46 -0
- data/examples/vector/read.rb +29 -0
- data/examples/vector/set.rb +35 -0
- data/examples/vector/set_all.rb +121 -0
- data/examples/vector/smpv.dat +15 -0
- data/examples/vector/test.rb +43 -0
- data/examples/vector/test_gslblock.rb +58 -0
- data/examples/vector/vector.rb +110 -0
- data/examples/vector/view.rb +35 -0
- data/examples/vector/view_all.rb +73 -0
- data/examples/vector/where.rb +29 -0
- data/examples/vector/write.rb +24 -0
- data/examples/vector/zip.rb +34 -0
- data/examples/wavelet/ecg.dat +256 -0
- data/examples/wavelet/wavelet1.rb +50 -0
- data/ext/alf.c +206 -0
- data/ext/array.c +642 -0
- data/ext/array_complex.c +248 -0
- data/ext/blas.c +29 -0
- data/ext/blas1.c +734 -0
- data/ext/blas2.c +1093 -0
- data/ext/blas3.c +881 -0
- data/ext/block.c +44 -0
- data/ext/block_source.c +887 -0
- data/ext/bspline.c +130 -0
- data/ext/bundle.c +3 -0
- data/ext/cdf.c +754 -0
- data/ext/cheb.c +542 -0
- data/ext/combination.c +283 -0
- data/ext/common.c +325 -0
- data/ext/complex.c +1004 -0
- data/ext/const.c +673 -0
- data/ext/const_additional.c +120 -0
- data/ext/cqp.c +283 -0
- data/ext/deriv.c +195 -0
- data/ext/dht.c +361 -0
- data/ext/diff.c +166 -0
- data/ext/dirac.c +389 -0
- data/ext/eigen.c +2373 -0
- data/ext/error.c +193 -0
- data/ext/extconf.rb +303 -0
- data/ext/fcmp.c +66 -0
- data/ext/fft.c +1102 -0
- data/ext/fit.c +205 -0
- data/ext/fresnel.c +312 -0
- data/ext/function.c +524 -0
- data/ext/geometry.c +139 -0
- data/ext/graph.c +1640 -0
- data/ext/gsl.c +280 -0
- data/ext/gsl_narray.c +804 -0
- data/ext/histogram.c +1991 -0
- data/ext/histogram2d.c +1068 -0
- data/ext/histogram3d.c +884 -0
- data/ext/histogram3d_source.c +750 -0
- data/ext/histogram_find.c +101 -0
- data/ext/histogram_oper.c +159 -0
- data/ext/ieee.c +100 -0
- data/ext/integration.c +1179 -0
- data/ext/interp.c +512 -0
- data/ext/jacobi.c +739 -0
- data/ext/linalg.c +4042 -0
- data/ext/linalg_complex.c +739 -0
- data/ext/math.c +725 -0
- data/ext/matrix.c +39 -0
- data/ext/matrix_complex.c +1737 -0
- data/ext/matrix_double.c +560 -0
- data/ext/matrix_int.c +256 -0
- data/ext/matrix_source.c +2734 -0
- data/ext/min.c +250 -0
- data/ext/monte.c +992 -0
- data/ext/multifit.c +1871 -0
- data/ext/multimin.c +806 -0
- data/ext/multimin_fsdf.c +156 -0
- data/ext/multiroots.c +955 -0
- data/ext/multiset.c +214 -0
- data/ext/ndlinear.c +321 -0
- data/ext/nmf.c +171 -0
- data/ext/nmf_wrap.c +75 -0
- data/ext/ntuple.c +469 -0
- data/ext/odeiv.c +962 -0
- data/ext/ool.c +879 -0
- data/ext/oper_complex_source.c +253 -0
- data/ext/permutation.c +596 -0
- data/ext/poly.c +42 -0
- data/ext/poly2.c +265 -0
- data/ext/poly_source.c +1915 -0
- data/ext/qrng.c +171 -0
- data/ext/randist.c +1873 -0
- data/ext/rational.c +480 -0
- data/ext/rng.c +612 -0
- data/ext/root.c +408 -0
- data/ext/sf.c +1494 -0
- data/ext/sf_airy.c +200 -0
- data/ext/sf_bessel.c +871 -0
- data/ext/sf_clausen.c +28 -0
- data/ext/sf_coulomb.c +206 -0
- data/ext/sf_coupling.c +121 -0
- data/ext/sf_dawson.c +29 -0
- data/ext/sf_debye.c +157 -0
- data/ext/sf_dilog.c +43 -0
- data/ext/sf_elementary.c +46 -0
- data/ext/sf_ellint.c +206 -0
- data/ext/sf_elljac.c +30 -0
- data/ext/sf_erfc.c +93 -0
- data/ext/sf_exp.c +169 -0
- data/ext/sf_expint.c +211 -0
- data/ext/sf_fermi_dirac.c +148 -0
- data/ext/sf_gamma.c +347 -0
- data/ext/sf_gegenbauer.c +97 -0
- data/ext/sf_hyperg.c +203 -0
- data/ext/sf_laguerre.c +113 -0
- data/ext/sf_lambert.c +47 -0
- data/ext/sf_legendre.c +368 -0
- data/ext/sf_log.c +105 -0
- data/ext/sf_mathieu.c +238 -0
- data/ext/sf_power.c +47 -0
- data/ext/sf_psi.c +98 -0
- data/ext/sf_synchrotron.c +48 -0
- data/ext/sf_transport.c +76 -0
- data/ext/sf_trigonometric.c +210 -0
- data/ext/sf_zeta.c +119 -0
- data/ext/signal.c +308 -0
- data/ext/siman.c +717 -0
- data/ext/sort.c +208 -0
- data/ext/spline.c +395 -0
- data/ext/stats.c +800 -0
- data/ext/sum.c +168 -0
- data/ext/tamu_anova.c +56 -0
- data/ext/tensor.c +38 -0
- data/ext/tensor_source.c +1123 -0
- data/ext/vector.c +38 -0
- data/ext/vector_complex.c +2246 -0
- data/ext/vector_double.c +1438 -0
- data/ext/vector_int.c +204 -0
- data/ext/vector_source.c +3336 -0
- data/ext/wavelet.c +945 -0
- data/include/rb_gsl.h +158 -0
- data/include/rb_gsl_array.h +238 -0
- data/include/rb_gsl_cheb.h +21 -0
- data/include/rb_gsl_common.h +348 -0
- data/include/rb_gsl_complex.h +25 -0
- data/include/rb_gsl_config.h +62 -0
- data/include/rb_gsl_const.h +29 -0
- data/include/rb_gsl_dirac.h +13 -0
- data/include/rb_gsl_eigen.h +17 -0
- data/include/rb_gsl_fft.h +62 -0
- data/include/rb_gsl_fit.h +25 -0
- data/include/rb_gsl_function.h +27 -0
- data/include/rb_gsl_graph.h +70 -0
- data/include/rb_gsl_histogram.h +63 -0
- data/include/rb_gsl_histogram3d.h +97 -0
- data/include/rb_gsl_integration.h +17 -0
- data/include/rb_gsl_interp.h +46 -0
- data/include/rb_gsl_linalg.h +25 -0
- data/include/rb_gsl_math.h +26 -0
- data/include/rb_gsl_odeiv.h +21 -0
- data/include/rb_gsl_poly.h +71 -0
- data/include/rb_gsl_rational.h +37 -0
- data/include/rb_gsl_rng.h +21 -0
- data/include/rb_gsl_root.h +22 -0
- data/include/rb_gsl_sf.h +119 -0
- data/include/rb_gsl_statistics.h +17 -0
- data/include/rb_gsl_tensor.h +45 -0
- data/include/rb_gsl_with_narray.h +29 -0
- data/include/templates_off.h +87 -0
- data/include/templates_on.h +241 -0
- data/lib/gsl.rb +3 -0
- data/lib/gsl/gnuplot.rb +41 -0
- data/lib/gsl/oper.rb +68 -0
- data/lib/ool.rb +22 -0
- data/lib/ool/conmin.rb +30 -0
- data/lib/rbgsl.rb +3 -0
- data/rdoc/alf.rdoc +77 -0
- data/rdoc/blas.rdoc +269 -0
- data/rdoc/bspline.rdoc +42 -0
- data/rdoc/changes.rdoc +164 -0
- data/rdoc/cheb.rdoc +99 -0
- data/rdoc/cholesky_complex.rdoc +46 -0
- data/rdoc/combi.rdoc +125 -0
- data/rdoc/complex.rdoc +210 -0
- data/rdoc/const.rdoc +546 -0
- data/rdoc/dht.rdoc +122 -0
- data/rdoc/diff.rdoc +133 -0
- data/rdoc/ehandling.rdoc +50 -0
- data/rdoc/eigen.rdoc +401 -0
- data/rdoc/fft.rdoc +535 -0
- data/rdoc/fit.rdoc +284 -0
- data/rdoc/function.rdoc +94 -0
- data/rdoc/graph.rdoc +137 -0
- data/rdoc/hist.rdoc +409 -0
- data/rdoc/hist2d.rdoc +279 -0
- data/rdoc/hist3d.rdoc +112 -0
- data/rdoc/index.rdoc +62 -0
- data/rdoc/integration.rdoc +398 -0
- data/rdoc/interp.rdoc +231 -0
- data/rdoc/intro.rdoc +27 -0
- data/rdoc/linalg.rdoc +681 -0
- data/rdoc/linalg_complex.rdoc +88 -0
- data/rdoc/math.rdoc +276 -0
- data/rdoc/matrix.rdoc +1093 -0
- data/rdoc/min.rdoc +189 -0
- data/rdoc/monte.rdoc +234 -0
- data/rdoc/multimin.rdoc +312 -0
- data/rdoc/multiroot.rdoc +293 -0
- data/rdoc/narray.rdoc +177 -0
- data/rdoc/ndlinear.rdoc +250 -0
- data/rdoc/nonlinearfit.rdoc +348 -0
- data/rdoc/ntuple.rdoc +88 -0
- data/rdoc/odeiv.rdoc +378 -0
- data/rdoc/perm.rdoc +221 -0
- data/rdoc/poly.rdoc +335 -0
- data/rdoc/qrng.rdoc +90 -0
- data/rdoc/randist.rdoc +233 -0
- data/rdoc/ref.rdoc +93 -0
- data/rdoc/rng.rdoc +203 -0
- data/rdoc/rngextra.rdoc +11 -0
- data/rdoc/roots.rdoc +305 -0
- data/rdoc/screenshot.rdoc +40 -0
- data/rdoc/sf.rdoc +1622 -0
- data/rdoc/siman.rdoc +89 -0
- data/rdoc/sort.rdoc +94 -0
- data/rdoc/start.rdoc +16 -0
- data/rdoc/stats.rdoc +219 -0
- data/rdoc/sum.rdoc +65 -0
- data/rdoc/tensor.rdoc +251 -0
- data/rdoc/tut.rdoc +5 -0
- data/rdoc/use.rdoc +177 -0
- data/rdoc/vector.rdoc +1243 -0
- data/rdoc/vector_complex.rdoc +347 -0
- data/rdoc/wavelet.rdoc +218 -0
- data/setup.rb +1585 -0
- data/tests/blas/amax.rb +14 -0
- data/tests/blas/asum.rb +16 -0
- data/tests/blas/axpy.rb +25 -0
- data/tests/blas/copy.rb +23 -0
- data/tests/blas/dot.rb +23 -0
- data/tests/bspline.rb +53 -0
- data/tests/cdf.rb +1388 -0
- data/tests/cheb.rb +112 -0
- data/tests/combination.rb +123 -0
- data/tests/complex.rb +17 -0
- data/tests/const.rb +24 -0
- data/tests/deriv.rb +85 -0
- data/tests/dht/dht1.rb +17 -0
- data/tests/dht/dht2.rb +23 -0
- data/tests/dht/dht3.rb +23 -0
- data/tests/dht/dht4.rb +23 -0
- data/tests/diff.rb +78 -0
- data/tests/eigen/eigen.rb +220 -0
- data/tests/eigen/gen.rb +105 -0
- data/tests/eigen/genherm.rb +66 -0
- data/tests/eigen/gensymm.rb +68 -0
- data/tests/eigen/nonsymm.rb +53 -0
- data/tests/eigen/nonsymmv.rb +53 -0
- data/tests/eigen/symm-herm.rb +74 -0
- data/tests/err.rb +58 -0
- data/tests/fit.rb +124 -0
- data/tests/gsl_test.rb +118 -0
- data/tests/gsl_test2.rb +110 -0
- data/tests/histo.rb +12 -0
- data/tests/integration/integration1.rb +72 -0
- data/tests/integration/integration2.rb +71 -0
- data/tests/integration/integration3.rb +71 -0
- data/tests/integration/integration4.rb +71 -0
- data/tests/interp.rb +45 -0
- data/tests/linalg/HH.rb +64 -0
- data/tests/linalg/LU.rb +47 -0
- data/tests/linalg/QR.rb +77 -0
- data/tests/linalg/SV.rb +24 -0
- data/tests/linalg/TDN.rb +116 -0
- data/tests/linalg/TDS.rb +122 -0
- data/tests/linalg/bidiag.rb +73 -0
- data/tests/linalg/cholesky.rb +20 -0
- data/tests/linalg/linalg.rb +158 -0
- data/tests/matrix/matrix_complex_test.rb +36 -0
- data/tests/matrix/matrix_nmf_test.rb +39 -0
- data/tests/matrix/matrix_test.rb +48 -0
- data/tests/min.rb +99 -0
- data/tests/monte/miser.rb +31 -0
- data/tests/monte/vegas.rb +45 -0
- data/tests/multifit/test_2dgauss.rb +112 -0
- data/tests/multifit/test_brown.rb +90 -0
- data/tests/multifit/test_enso.rb +246 -0
- data/tests/multifit/test_filip.rb +155 -0
- data/tests/multifit/test_gauss.rb +97 -0
- data/tests/multifit/test_longley.rb +110 -0
- data/tests/multifit/test_multifit.rb +52 -0
- data/tests/multimin.rb +139 -0
- data/tests/multiroot.rb +131 -0
- data/tests/multiset.rb +52 -0
- data/tests/narray/blas_dnrm2.rb +20 -0
- data/tests/odeiv.rb +353 -0
- data/tests/poly/poly.rb +290 -0
- data/tests/poly/special.rb +65 -0
- data/tests/qrng.rb +131 -0
- data/tests/quartic.rb +29 -0
- data/tests/randist.rb +134 -0
- data/tests/rng.rb +305 -0
- data/tests/roots.rb +76 -0
- data/tests/run-test.sh +17 -0
- data/tests/sf/gsl_test_sf.rb +249 -0
- data/tests/sf/test_airy.rb +83 -0
- data/tests/sf/test_bessel.rb +306 -0
- data/tests/sf/test_coulomb.rb +17 -0
- data/tests/sf/test_dilog.rb +25 -0
- data/tests/sf/test_gamma.rb +209 -0
- data/tests/sf/test_hyperg.rb +356 -0
- data/tests/sf/test_legendre.rb +227 -0
- data/tests/sf/test_mathieu.rb +59 -0
- data/tests/sf/test_mode.rb +19 -0
- data/tests/sf/test_sf.rb +839 -0
- data/tests/stats.rb +174 -0
- data/tests/stats_mt.rb +16 -0
- data/tests/sum.rb +98 -0
- data/tests/sys.rb +323 -0
- data/tests/tensor.rb +419 -0
- data/tests/vector/vector_complex_test.rb +101 -0
- data/tests/vector/vector_test.rb +141 -0
- data/tests/wavelet.rb +142 -0
- metadata +789 -0
data/ext/multifit.c
ADDED
@@ -0,0 +1,1871 @@
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/*
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multifit.c
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Ruby/GSL: Ruby extension library for GSL (GNU Scientific Library)
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(C) Copyright 2004 by Yoshiki Tsunesada
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Ruby/GSL is free software: you can redistribute it and/or modify it
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under the terms of the GNU General Public License.
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This library is distributed in the hope that it will be useful, but
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WITHOUT ANY WARRANTY.
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*/
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#include "rb_gsl_config.h"
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#include "rb_gsl_fit.h"
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#include "rb_gsl_function.h"
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#include "rb_gsl_common.h"
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#ifdef HAVE_NDLINEAR_GSL_MULTIFIT_NDLINEAR_H
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#include <ndlinear/gsl_multifit_ndlinear.h>
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void Init_ndlinear(VALUE module);
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#endif
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#ifndef CHECK_WORKSPACE
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#define CHECK_WORKSPACE(x) if(CLASS_OF(x)!=cgsl_multifit_workspace)\
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rb_raise(rb_eTypeError,\
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"wrong argument type %s (GSL::MultiFit::Workspace expected)",\
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rb_class2name(CLASS_OF(x)));
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#endif
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#ifndef CHECK_MULTIFIT_FUNCTION_FDF
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#define CHECK_MULTIFIT_FUNCTION_FDF(x) if(CLASS_OF(x)!=cgsl_multifit_function_fdf)\
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rb_raise(rb_eTypeError,\
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"wrong argument type %s (GSL::MultiFit::Workspace expected)",\
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rb_class2name(CLASS_OF(x)));
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#endif
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static VALUE cgsl_multifit_workspace;
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static VALUE cgsl_multifit_function_fdf;
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enum MultiFit_Solver_Type{
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GSL_MULTIFIT_FDFSOLVER_LMSDER,
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GSL_MULTIFIT_FDFSOLVER_LMDER,
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};
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static VALUE rb_gsl_multifit_workspace_new(VALUE klass, VALUE n, VALUE p)
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{
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gsl_multifit_linear_workspace *w = NULL;
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CHECK_FIXNUM(n); CHECK_FIXNUM(p);
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w = gsl_multifit_linear_alloc(FIX2INT(n), FIX2INT(p));
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return Data_Wrap_Struct(cgsl_multifit_workspace, 0, gsl_multifit_linear_free, w);
|
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}
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|
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static VALUE rb_gsl_multifit_linear(int argc, VALUE *argv, VALUE obj)
|
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{
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gsl_multifit_linear_workspace *space = NULL;
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54
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gsl_matrix *x = NULL, *cov = NULL;
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gsl_vector *y = NULL, *c = NULL;
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double chisq;
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int status, flag = 0;
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VALUE vc, vcov;
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if (argc != 2 && argc != 3)
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rb_raise(rb_eArgError, "wrong number of arguments (%d for 2 or 3)", argc);
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Data_Get_Matrix(argv[0], x);
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Data_Get_Vector(argv[1], y);
|
63
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if (argc == 3) {
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64
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CHECK_WORKSPACE(argv[2]);
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65
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Data_Get_Struct(argv[2], gsl_multifit_linear_workspace, space);
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66
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} else {
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67
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space = gsl_multifit_linear_alloc(x->size1, x->size2);
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flag = 1;
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69
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}
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70
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cov = gsl_matrix_alloc(x->size2, x->size2);
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c = gsl_vector_alloc(x->size2);
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status = gsl_multifit_linear(x, y, c, cov, &chisq, space);
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73
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if (flag == 1) gsl_multifit_linear_free(space);
|
74
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vc = Data_Wrap_Struct(cgsl_vector, 0, gsl_vector_free, c);
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75
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vcov = Data_Wrap_Struct(cgsl_matrix, 0, gsl_matrix_free, cov);
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76
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return rb_ary_new3(4, vc, vcov, rb_float_new(chisq), INT2FIX(status));
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77
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}
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78
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static VALUE rb_gsl_multifit_wlinear(int argc, VALUE *argv, VALUE obj)
|
80
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{
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81
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gsl_multifit_linear_workspace *space = NULL;
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82
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gsl_matrix *x = NULL, *cov = NULL;
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gsl_vector *w = NULL, *y = NULL, *c = NULL;
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double chisq;
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85
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int status, flag = 0;
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VALUE vc, vcov;
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if (argc != 3 && argc != 4)
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88
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rb_raise(rb_eArgError, "wrong number of arguments (%d for 3 or 4)", argc);
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89
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Data_Get_Matrix(argv[0], x);
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90
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Data_Get_Vector(argv[1], w);
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91
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Data_Get_Vector(argv[2], y);
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92
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if (argc == 4) {
|
93
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CHECK_WORKSPACE(argv[3]);
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94
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Data_Get_Struct(argv[3], gsl_multifit_linear_workspace, space);
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95
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} else {
|
96
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space = gsl_multifit_linear_alloc(x->size1, x->size2);
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97
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flag = 1;
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}
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99
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cov = gsl_matrix_alloc(x->size2, x->size2);
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c = gsl_vector_alloc(x->size2);
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status = gsl_multifit_wlinear(x, w, y, c, cov, &chisq, space);
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102
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if (flag == 1) gsl_multifit_linear_free(space);
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103
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vc = Data_Wrap_Struct(cgsl_vector, 0, gsl_vector_free, c);
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104
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vcov = Data_Wrap_Struct(cgsl_matrix, 0, gsl_matrix_free, cov);
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105
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return rb_ary_new3(4, vc, vcov, rb_float_new(chisq), INT2FIX(status));
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106
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}
|
107
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+
|
108
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static void calc_X_power(gsl_matrix *X, gsl_vector *x, size_t order)
|
109
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{
|
110
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size_t i, j;
|
111
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double val;
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112
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for (i = 0; i < x->size; i++) {
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val = 1.0;
|
114
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gsl_matrix_set(X, i, 0, val);
|
115
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for (j = 1; j <= order; j++) {
|
116
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val *= gsl_vector_get(x, i);
|
117
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gsl_matrix_set(X, i, j, val);
|
118
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}
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119
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}
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120
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}
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121
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|
122
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static void calc_X_legendre(gsl_matrix *X, gsl_vector *v, size_t order)
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123
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{
|
124
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size_t i, n;
|
125
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double a, b, c, x;
|
126
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for (i = 0; i < v->size; i++) {
|
127
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a = 1.0;
|
128
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b = gsl_vector_get(v, i);
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129
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gsl_matrix_set(X, i, 0, a);
|
130
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gsl_matrix_set(X, i, 1, b);
|
131
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for (n = 2; n <= order; n++) {
|
132
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x = gsl_vector_get(v, i);
|
133
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c = ((2*n-1)*x*b - (n-1)*a)/n;
|
134
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gsl_matrix_set(X, i, n, c);
|
135
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a = b;
|
136
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b = c;
|
137
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}
|
138
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}
|
139
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}
|
140
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+
|
141
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static VALUE rb_gsl_multifit_XXXfit(int argc, VALUE *argv, VALUE obj,
|
142
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void (*fn)(gsl_matrix*, gsl_vector*,size_t))
|
143
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{
|
144
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gsl_multifit_linear_workspace *space = NULL;
|
145
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gsl_matrix *X = NULL, *cov = NULL;
|
146
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gsl_vector *x, *y = NULL, *w, *c = NULL, *err;
|
147
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+
gsl_vector_view xx, yy, ww;
|
148
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+
size_t order, i;
|
149
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+
double chisq;
|
150
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+
int status, flag = 0, flagw = 0;
|
151
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+
VALUE vc, verr;
|
152
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+
if (argc != 3 && argc != 4 && argc != 5)
|
153
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+
rb_raise(rb_eArgError, "wrong number of arguments (%d for 3 or 4)", argc);
|
154
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+
x = &xx.vector;
|
155
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+
w = &ww.vector;
|
156
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+
y = &yy.vector;
|
157
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+
Data_Get_Vector(argv[0], x);
|
158
|
+
if (argc >= 3 && VECTOR_P(argv[2])) {
|
159
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+
Data_Get_Vector(argv[1], w);
|
160
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+
Data_Get_Vector(argv[2], y);
|
161
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+
order = NUM2INT(argv[3]);
|
162
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+
flagw = 1;
|
163
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+
} else {
|
164
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+
Data_Get_Vector(argv[1], y);
|
165
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+
order = NUM2INT(argv[2]);
|
166
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+
flagw = 0;
|
167
|
+
}
|
168
|
+
if (rb_obj_is_kind_of(argv[argc-1], cgsl_multifit_workspace)) {
|
169
|
+
Data_Get_Struct(argv[argc-1], gsl_multifit_linear_workspace, space);
|
170
|
+
} else {
|
171
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+
space = gsl_multifit_linear_alloc(x->size, order + 1);
|
172
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+
flag = 1;
|
173
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+
}
|
174
|
+
cov = gsl_matrix_alloc(order + 1, order + 1);
|
175
|
+
c = gsl_vector_alloc(order + 1);
|
176
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+
X = gsl_matrix_alloc(x->size, order + 1);
|
177
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+
(*fn)(X, x, order);
|
178
|
+
if (flagw == 0) status = gsl_multifit_linear(X, y, c, cov, &chisq, space);
|
179
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+
else status = gsl_multifit_wlinear(X, w, y, c, cov, &chisq, space);
|
180
|
+
if (flag == 1) gsl_multifit_linear_free(space);
|
181
|
+
err = gsl_vector_alloc(order + 1);
|
182
|
+
vc = Data_Wrap_Struct(cgsl_poly, 0, gsl_vector_free, c);
|
183
|
+
verr = Data_Wrap_Struct(cgsl_poly, 0, gsl_vector_free, err);
|
184
|
+
for (i = 0; i < err->size; i++)
|
185
|
+
gsl_vector_set(err, i, sqrt(chisq/((double)x->size-err->size)*gsl_matrix_get(cov, i, i)));
|
186
|
+
|
187
|
+
gsl_matrix_free(X);
|
188
|
+
gsl_matrix_free(cov);
|
189
|
+
return rb_ary_new3(4, vc, verr, rb_float_new(chisq), INT2FIX(status));
|
190
|
+
}
|
191
|
+
|
192
|
+
static VALUE rb_gsl_multifit_polyfit(int argc, VALUE *argv, VALUE obj)
|
193
|
+
{
|
194
|
+
return rb_gsl_multifit_XXXfit(argc, argv, obj, calc_X_power);
|
195
|
+
}
|
196
|
+
|
197
|
+
static VALUE rb_gsl_multifit_legfit(int argc, VALUE *argv, VALUE obj)
|
198
|
+
{
|
199
|
+
return rb_gsl_multifit_XXXfit(argc, argv, obj, calc_X_legendre);
|
200
|
+
}
|
201
|
+
|
202
|
+
/**********/
|
203
|
+
|
204
|
+
static VALUE rb_gsl_multifit_fdfsolver_new(int argc, VALUE *argv, VALUE klass)
|
205
|
+
{
|
206
|
+
const gsl_multifit_fdfsolver_type *T;
|
207
|
+
gsl_multifit_fdfsolver *solver = NULL;
|
208
|
+
size_t n, p;
|
209
|
+
char name[64];
|
210
|
+
switch (argc) {
|
211
|
+
case 3:
|
212
|
+
switch (TYPE(argv[0])) {
|
213
|
+
case T_STRING:
|
214
|
+
strcpy(name, STR2CSTR(argv[0]));
|
215
|
+
if (str_tail_grep(name, "lmsder") == 0) {
|
216
|
+
T = gsl_multifit_fdfsolver_lmsder;
|
217
|
+
} else if (str_tail_grep(name, "lmder") == 0) {
|
218
|
+
T = gsl_multifit_fdfsolver_lmder;
|
219
|
+
} else {
|
220
|
+
rb_raise(rb_eTypeError, "unknown solver type %s (lmsder of lmder)",
|
221
|
+
name);
|
222
|
+
}
|
223
|
+
break;
|
224
|
+
case T_FIXNUM:
|
225
|
+
switch (FIX2INT(argv[0])) {
|
226
|
+
case GSL_MULTIFIT_FDFSOLVER_LMSDER:
|
227
|
+
T = gsl_multifit_fdfsolver_lmsder;
|
228
|
+
break;
|
229
|
+
case GSL_MULTIFIT_FDFSOLVER_LMDER:
|
230
|
+
T = gsl_multifit_fdfsolver_lmder;
|
231
|
+
break;
|
232
|
+
default:
|
233
|
+
rb_raise(rb_eTypeError,
|
234
|
+
"unknown solver type (GSL::MultiFit::FdfSolver::LMSDER or LMDER expected)");
|
235
|
+
break;
|
236
|
+
}
|
237
|
+
break;
|
238
|
+
default:
|
239
|
+
rb_raise(rb_eTypeError, "wrong argument type %s (Fixnum or String)",
|
240
|
+
rb_class2name(CLASS_OF(argv[0])));
|
241
|
+
break;
|
242
|
+
}
|
243
|
+
CHECK_FIXNUM(argv[1]); CHECK_FIXNUM(argv[2]);
|
244
|
+
n = FIX2INT(argv[1]);
|
245
|
+
p = FIX2INT(argv[2]);
|
246
|
+
break;
|
247
|
+
case 2:
|
248
|
+
CHECK_FIXNUM(argv[0]); CHECK_FIXNUM(argv[1]);
|
249
|
+
T = gsl_multifit_fdfsolver_lmsder;
|
250
|
+
n = FIX2INT(argv[0]);
|
251
|
+
p = FIX2INT(argv[1]);
|
252
|
+
break;
|
253
|
+
default:
|
254
|
+
rb_raise(rb_eArgError, "wrong number of arguments");
|
255
|
+
break;
|
256
|
+
}
|
257
|
+
solver = gsl_multifit_fdfsolver_alloc(T, n, p);
|
258
|
+
return Data_Wrap_Struct(klass, 0, gsl_multifit_fdfsolver_free, solver);
|
259
|
+
}
|
260
|
+
|
261
|
+
static VALUE rb_gsl_multifit_fdfsolver_set(VALUE obj, VALUE ff, VALUE xx)
|
262
|
+
{
|
263
|
+
gsl_multifit_fdfsolver *solver = NULL;
|
264
|
+
gsl_multifit_function_fdf *f = NULL;
|
265
|
+
gsl_vector *x = NULL;
|
266
|
+
int status;
|
267
|
+
CHECK_MULTIFIT_FUNCTION_FDF(ff);
|
268
|
+
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
269
|
+
Data_Get_Struct(ff, gsl_multifit_function_fdf, f);
|
270
|
+
Data_Get_Vector(xx, x);
|
271
|
+
status = gsl_multifit_fdfsolver_set(solver, f, x);
|
272
|
+
return INT2FIX(status);
|
273
|
+
}
|
274
|
+
|
275
|
+
static VALUE rb_gsl_multifit_fdfsolver_name(VALUE obj)
|
276
|
+
{
|
277
|
+
gsl_multifit_fdfsolver *solver = NULL;
|
278
|
+
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
279
|
+
return rb_str_new2(gsl_multifit_fdfsolver_name(solver));
|
280
|
+
}
|
281
|
+
|
282
|
+
static VALUE rb_gsl_multifit_fdfsolver_iterate(VALUE obj)
|
283
|
+
{
|
284
|
+
gsl_multifit_fdfsolver *solver = NULL;
|
285
|
+
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
286
|
+
return INT2FIX(gsl_multifit_fdfsolver_iterate(solver));
|
287
|
+
}
|
288
|
+
|
289
|
+
static VALUE rb_gsl_multifit_fdfsolver_position(VALUE obj)
|
290
|
+
{
|
291
|
+
gsl_multifit_fdfsolver *solver = NULL;
|
292
|
+
gsl_vector *x = NULL;
|
293
|
+
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
294
|
+
x = gsl_multifit_fdfsolver_position(solver);
|
295
|
+
return Data_Wrap_Struct(cgsl_vector_view_ro, 0, NULL, x);
|
296
|
+
}
|
297
|
+
|
298
|
+
static VALUE rb_gsl_multifit_fdfsolver_print_state(VALUE obj, VALUE i)
|
299
|
+
{
|
300
|
+
gsl_multifit_fdfsolver *solver = NULL;
|
301
|
+
CHECK_FIXNUM(i);
|
302
|
+
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
303
|
+
printf("iter: %d x = %15.8f %15.8f %15.8f |f(x)| = %g\n",
|
304
|
+
(int) FIX2INT(i), gsl_vector_get(solver->x, 0), gsl_vector_get(solver->x, 1),
|
305
|
+
gsl_vector_get(solver->x, 2), gsl_blas_dnrm2(solver->f));
|
306
|
+
return Qtrue;
|
307
|
+
}
|
308
|
+
|
309
|
+
static VALUE rb_gsl_multifit_fdfsolver_fdf(VALUE obj)
|
310
|
+
{
|
311
|
+
gsl_multifit_fdfsolver *solver = NULL;
|
312
|
+
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
313
|
+
return Data_Wrap_Struct(cgsl_multifit_function_fdf, 0, NULL, solver->fdf);
|
314
|
+
}
|
315
|
+
|
316
|
+
static VALUE rb_gsl_multifit_fdfsolver_test_delta(VALUE obj, VALUE r, VALUE a)
|
317
|
+
{
|
318
|
+
gsl_multifit_fdfsolver *solver = NULL;
|
319
|
+
Need_Float(r); Need_Float(a);
|
320
|
+
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
321
|
+
return INT2FIX(gsl_multifit_test_delta(solver->dx, solver->x, NUM2DBL(r), NUM2DBL(a)));
|
322
|
+
}
|
323
|
+
|
324
|
+
static VALUE rb_gsl_multifit_fdfsolver_test_gradient(int argc, VALUE *argv, VALUE obj)
|
325
|
+
{
|
326
|
+
gsl_multifit_fdfsolver *solver = NULL;
|
327
|
+
gsl_vector *g = NULL;
|
328
|
+
int status;
|
329
|
+
double epsabs;
|
330
|
+
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
331
|
+
switch (argc) {
|
332
|
+
case 1:
|
333
|
+
Need_Float(argv[0]);
|
334
|
+
g = gsl_vector_alloc(solver->x->size);
|
335
|
+
gsl_multifit_gradient(solver->J, solver->f, g);
|
336
|
+
epsabs = NUM2DBL(argv[0]);
|
337
|
+
status = gsl_multifit_test_gradient(g, epsabs);
|
338
|
+
gsl_vector_free(g);
|
339
|
+
break;
|
340
|
+
case 2:
|
341
|
+
Need_Float(argv[1]);
|
342
|
+
Data_Get_Vector(argv[0], g);
|
343
|
+
epsabs = NUM2DBL(argv[1]);
|
344
|
+
status = gsl_multifit_test_gradient(g, epsabs);
|
345
|
+
break;
|
346
|
+
default:
|
347
|
+
rb_raise(rb_eArgError, "wrong number of arguments");
|
348
|
+
break;
|
349
|
+
}
|
350
|
+
return INT2FIX(status);
|
351
|
+
}
|
352
|
+
|
353
|
+
static VALUE rb_gsl_multifit_fdfsolver_gradient(int argc, VALUE *argv, VALUE obj)
|
354
|
+
{
|
355
|
+
gsl_multifit_fdfsolver *solver = NULL;
|
356
|
+
gsl_vector *g = NULL;
|
357
|
+
// local variable "status" declared and set, but never used
|
358
|
+
//int status;
|
359
|
+
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
360
|
+
if (argc == 1) {
|
361
|
+
Data_Get_Vector(argv[0], g);
|
362
|
+
return INT2FIX(gsl_multifit_gradient(solver->J, solver->f, g));
|
363
|
+
} else {
|
364
|
+
g = gsl_vector_alloc(solver->x->size);
|
365
|
+
/*status =*/ gsl_multifit_gradient(solver->J, solver->f, g);
|
366
|
+
return Data_Wrap_Struct(cgsl_vector, 0, gsl_vector_free, g);
|
367
|
+
}
|
368
|
+
}
|
369
|
+
|
370
|
+
static VALUE rb_gsl_multifit_fdfsolver_covar(int argc, VALUE *argv, VALUE obj)
|
371
|
+
{
|
372
|
+
gsl_multifit_fdfsolver *solver = NULL;
|
373
|
+
gsl_matrix *covar = NULL;
|
374
|
+
double epsrel;
|
375
|
+
// local variable "status" declared and set, but never used
|
376
|
+
//int status;
|
377
|
+
if (argc < 1) rb_raise(rb_eArgError, "too few arguments");
|
378
|
+
Need_Float(argv[0]);
|
379
|
+
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
380
|
+
epsrel = NUM2DBL(argv[0]);
|
381
|
+
switch (argc) {
|
382
|
+
case 1:
|
383
|
+
covar = gsl_matrix_alloc(solver->x->size, solver->x->size);
|
384
|
+
/*status =*/ gsl_multifit_covar(solver->J, epsrel, covar);
|
385
|
+
return Data_Wrap_Struct(cgsl_matrix, 0, gsl_matrix_free, covar);
|
386
|
+
break;
|
387
|
+
case 2:
|
388
|
+
Data_Get_Matrix(argv[1], covar);
|
389
|
+
return INT2FIX(gsl_multifit_covar(solver->J, epsrel, covar));
|
390
|
+
break;
|
391
|
+
default:
|
392
|
+
rb_raise(rb_eArgError, "wrong number of arguments");
|
393
|
+
break;
|
394
|
+
}
|
395
|
+
}
|
396
|
+
|
397
|
+
static VALUE rb_gsl_multifit_fdfsolver_x(VALUE obj)
|
398
|
+
{
|
399
|
+
gsl_multifit_fdfsolver *solver = NULL;
|
400
|
+
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
401
|
+
return Data_Wrap_Struct(cgsl_vector_view_ro, 0, NULL, solver->x);
|
402
|
+
}
|
403
|
+
|
404
|
+
static VALUE rb_gsl_multifit_fdfsolver_dx(VALUE obj)
|
405
|
+
{
|
406
|
+
gsl_multifit_fdfsolver *solver = NULL;
|
407
|
+
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
408
|
+
return Data_Wrap_Struct(cgsl_vector_view_ro, 0, NULL, solver->dx);
|
409
|
+
}
|
410
|
+
|
411
|
+
static VALUE rb_gsl_multifit_fdfsolver_f(VALUE obj)
|
412
|
+
{
|
413
|
+
gsl_multifit_fdfsolver *solver = NULL;
|
414
|
+
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
415
|
+
return Data_Wrap_Struct(cgsl_vector_view_ro, 0, NULL, solver->f);
|
416
|
+
}
|
417
|
+
|
418
|
+
static VALUE rb_gsl_multifit_fdfsolver_J(VALUE obj)
|
419
|
+
{
|
420
|
+
gsl_multifit_fdfsolver *solver = NULL;
|
421
|
+
Data_Get_Struct(obj, gsl_multifit_fdfsolver, solver);
|
422
|
+
return Data_Wrap_Struct(cgsl_matrix_view_ro, 0, NULL, solver->J);
|
423
|
+
}
|
424
|
+
|
425
|
+
/* singleton */
|
426
|
+
static VALUE rb_gsl_multifit_test_delta(VALUE obj, VALUE ddx, VALUE xx, VALUE a, VALUE r)
|
427
|
+
{
|
428
|
+
gsl_vector *dx = NULL, *x = NULL;
|
429
|
+
Need_Float(a); Need_Float(r);
|
430
|
+
Data_Get_Vector(ddx, dx);
|
431
|
+
Data_Get_Vector(xx, x);
|
432
|
+
return INT2FIX(gsl_multifit_test_delta(dx, x, NUM2DBL(a), NUM2DBL(r)));
|
433
|
+
}
|
434
|
+
|
435
|
+
static VALUE rb_gsl_multifit_test_gradient(VALUE obj, VALUE gg, VALUE a)
|
436
|
+
{
|
437
|
+
gsl_vector *g = NULL;
|
438
|
+
Need_Float(a);
|
439
|
+
Data_Get_Vector(gg, g);
|
440
|
+
return INT2FIX(gsl_multifit_test_gradient(g, NUM2DBL(a)));
|
441
|
+
}
|
442
|
+
|
443
|
+
static VALUE rb_gsl_multifit_gradient(int argc, VALUE *argv, VALUE obj)
|
444
|
+
{
|
445
|
+
gsl_vector *g = NULL, *f = NULL;
|
446
|
+
gsl_matrix *J = NULL;
|
447
|
+
// local variable "status" declared and set, but never used
|
448
|
+
//int status;
|
449
|
+
switch (argc) {
|
450
|
+
case 2:
|
451
|
+
Data_Get_Matrix(argv[0], J);
|
452
|
+
Data_Get_Vector(argv[1], f);
|
453
|
+
g = gsl_vector_alloc(f->size);
|
454
|
+
/*status =*/ gsl_multifit_gradient(J, f, g);
|
455
|
+
return Data_Wrap_Struct(cgsl_vector, 0, gsl_vector_free, g);
|
456
|
+
break;
|
457
|
+
case 3:
|
458
|
+
Data_Get_Matrix(argv[0], J);
|
459
|
+
Data_Get_Vector(argv[1], f);
|
460
|
+
Data_Get_Vector(argv[2], g);
|
461
|
+
return INT2FIX(gsl_multifit_gradient(J, f, g));
|
462
|
+
break;
|
463
|
+
default:
|
464
|
+
rb_raise(rb_eArgError, "wrong number of arguments");
|
465
|
+
break;
|
466
|
+
}
|
467
|
+
}
|
468
|
+
|
469
|
+
static VALUE rb_gsl_multifit_covar(int argc, VALUE *argv, VALUE obj)
|
470
|
+
{
|
471
|
+
gsl_matrix *J = NULL, *covar = NULL;
|
472
|
+
double epsrel;
|
473
|
+
int status;
|
474
|
+
switch (argc) {
|
475
|
+
case 2:
|
476
|
+
Need_Float(argv[1]);
|
477
|
+
Data_Get_Matrix(argv[0], J);
|
478
|
+
epsrel = NUM2DBL(argv[1]);
|
479
|
+
covar = gsl_matrix_alloc(J->size2, J->size2);
|
480
|
+
/*status =*/ gsl_multifit_covar(J, epsrel, covar);
|
481
|
+
return Data_Wrap_Struct(cgsl_matrix, 0, gsl_matrix_free, covar);
|
482
|
+
break;
|
483
|
+
case 3:
|
484
|
+
Need_Float(argv[1]);
|
485
|
+
Data_Get_Matrix(argv[0], J);
|
486
|
+
epsrel = NUM2DBL(argv[1]);
|
487
|
+
Data_Get_Matrix(argv[2], covar);
|
488
|
+
status = gsl_multifit_covar(J, epsrel, covar);
|
489
|
+
return INT2FIX(status);
|
490
|
+
break;
|
491
|
+
default:
|
492
|
+
rb_raise(rb_eArgError, "wrong number of arguments");
|
493
|
+
break;
|
494
|
+
}
|
495
|
+
}
|
496
|
+
|
497
|
+
static void rb_gsl_multifit_define_const(VALUE klass)
|
498
|
+
{
|
499
|
+
rb_define_const(klass, "LMSDER",
|
500
|
+
INT2FIX(GSL_MULTIFIT_FDFSOLVER_LMSDER));
|
501
|
+
rb_define_const(klass, "LMDER",
|
502
|
+
INT2FIX(GSL_MULTIFIT_FDFSOLVER_LMDER));
|
503
|
+
|
504
|
+
rb_define_const(klass, "Lmsder",
|
505
|
+
INT2FIX(GSL_MULTIFIT_FDFSOLVER_LMSDER));
|
506
|
+
rb_define_const(klass, "Lmder",
|
507
|
+
INT2FIX(GSL_MULTIFIT_FDFSOLVER_LMDER));
|
508
|
+
}
|
509
|
+
|
510
|
+
static void gsl_multifit_function_fdf_free(gsl_multifit_function_fdf *f);
|
511
|
+
static void gsl_multifit_function_fdf_free(gsl_multifit_function_fdf *f)
|
512
|
+
{
|
513
|
+
free((gsl_multifit_function_fdf *) f);
|
514
|
+
}
|
515
|
+
|
516
|
+
static void gsl_multifit_function_fdf_mark(gsl_multifit_function_fdf *F);
|
517
|
+
static void gsl_multifit_function_fdf_mark(gsl_multifit_function_fdf *F)
|
518
|
+
{
|
519
|
+
rb_gc_mark((VALUE) F->params);
|
520
|
+
}
|
521
|
+
|
522
|
+
static int gsl_multifit_function_fdf_f(const gsl_vector *x, void *params,
|
523
|
+
gsl_vector *f);
|
524
|
+
static int gsl_multifit_function_fdf_df(const gsl_vector *x, void *params,
|
525
|
+
gsl_matrix *J);
|
526
|
+
static int gsl_multifit_function_fdf_fdf(const gsl_vector *x, void *params,
|
527
|
+
gsl_vector *f, gsl_matrix *J);
|
528
|
+
|
529
|
+
static VALUE rb_gsl_multifit_function_fdf_set_procs(int argc, VALUE *argv, VALUE obj);
|
530
|
+
|
531
|
+
static VALUE rb_gsl_multifit_function_fdf_new(int argc, VALUE *argv, VALUE klass)
|
532
|
+
{
|
533
|
+
gsl_multifit_function_fdf *func = NULL;
|
534
|
+
VALUE obj;
|
535
|
+
func = ALLOC(gsl_multifit_function_fdf);
|
536
|
+
func->f = &gsl_multifit_function_fdf_f;
|
537
|
+
func->df = &gsl_multifit_function_fdf_df;
|
538
|
+
func->fdf = &gsl_multifit_function_fdf_fdf;
|
539
|
+
func->params = NULL;
|
540
|
+
obj = Data_Wrap_Struct(klass, gsl_multifit_function_fdf_mark, gsl_multifit_function_fdf_free, func);
|
541
|
+
switch (argc) {
|
542
|
+
case 0:
|
543
|
+
case 1:
|
544
|
+
break;
|
545
|
+
case 2:
|
546
|
+
case 3:
|
547
|
+
rb_gsl_multifit_function_fdf_set_procs(argc, argv, obj);
|
548
|
+
break;
|
549
|
+
default:
|
550
|
+
rb_raise(rb_eArgError, "wrong number of arguments (%d for 0-3)", argc);
|
551
|
+
break;
|
552
|
+
}
|
553
|
+
return obj;
|
554
|
+
}
|
555
|
+
|
556
|
+
static VALUE rb_gsl_multifit_function_fdf_set_procs(int argc, VALUE *argv, VALUE obj)
|
557
|
+
{
|
558
|
+
gsl_multifit_function_fdf *func = NULL;
|
559
|
+
VALUE ary;
|
560
|
+
Data_Get_Struct(obj, gsl_multifit_function_fdf, func);
|
561
|
+
if (func->params == NULL) {
|
562
|
+
ary = rb_ary_new2(4);
|
563
|
+
/* (VALUE) func->params = ary;*/
|
564
|
+
func->params = (void *) ary;
|
565
|
+
} else {
|
566
|
+
ary = (VALUE) func->params;
|
567
|
+
}
|
568
|
+
rb_ary_store(ary, 0, argv[0]);
|
569
|
+
rb_ary_store(ary, 1, argv[1]);
|
570
|
+
switch (argc) {
|
571
|
+
case 2:
|
572
|
+
break;
|
573
|
+
case 3:
|
574
|
+
if (TYPE(argv[2]) == T_FIXNUM) {
|
575
|
+
func->p = FIX2INT(argv[2]);
|
576
|
+
rb_ary_store(ary, 2, Qnil);
|
577
|
+
} else rb_ary_store(ary, 2, argv[2]);
|
578
|
+
break;
|
579
|
+
case 4:
|
580
|
+
if (TYPE(argv[2]) == T_FIXNUM) {
|
581
|
+
func->p = FIX2INT(argv[2]);
|
582
|
+
rb_ary_store(ary, 2, argv[3]);
|
583
|
+
} else {
|
584
|
+
func->p = FIX2INT(argv[3]);
|
585
|
+
rb_ary_store(ary, 2, argv[2]);
|
586
|
+
}
|
587
|
+
break;
|
588
|
+
default:
|
589
|
+
rb_raise(rb_eArgError, "wrong number of arguments (%d for 3 or 4)", argc);
|
590
|
+
break;
|
591
|
+
}
|
592
|
+
return obj;
|
593
|
+
}
|
594
|
+
|
595
|
+
static VALUE rb_gsl_multifit_function_fdf_set_data(int argc, VALUE *argv, VALUE obj)
|
596
|
+
{
|
597
|
+
VALUE ary, ary2;
|
598
|
+
gsl_multifit_function_fdf *func = NULL;
|
599
|
+
Data_Get_Struct(obj, gsl_multifit_function_fdf, func);
|
600
|
+
if (func->params == NULL) {
|
601
|
+
ary = rb_ary_new2(4);
|
602
|
+
/* (VALUE) func->params = ary;*/
|
603
|
+
func->params = (void *) ary;
|
604
|
+
} else {
|
605
|
+
ary = (VALUE) func->params;
|
606
|
+
}
|
607
|
+
switch (argc) {
|
608
|
+
case 2:
|
609
|
+
ary2 = rb_ary_new3(2, argv[0], argv[1]); /* t, y */
|
610
|
+
break;
|
611
|
+
case 3:
|
612
|
+
ary2 = rb_ary_new3(3, argv[0], argv[1], argv[2]); /* t, y, sigma */
|
613
|
+
break;
|
614
|
+
default:
|
615
|
+
rb_raise(rb_eArgError, "wrong number of arguments (%d for 2 or 3)", argc);
|
616
|
+
break;
|
617
|
+
}
|
618
|
+
func->n = NUM2INT(rb_funcall(argv[0], rb_intern("size"), 0));
|
619
|
+
rb_ary_store(ary, 3, ary2);
|
620
|
+
return obj;
|
621
|
+
}
|
622
|
+
|
623
|
+
static int gsl_multifit_function_fdf_f(const gsl_vector *x, void *params,
|
624
|
+
gsl_vector *f)
|
625
|
+
{
|
626
|
+
VALUE vt_y_sigma, vt, vy, vsigma, vf, vx, proc, ary;
|
627
|
+
ary = (VALUE) params;
|
628
|
+
vt_y_sigma = rb_ary_entry(ary, 3);
|
629
|
+
proc = rb_ary_entry(ary, 0);
|
630
|
+
vx = Data_Wrap_Struct(cgsl_vector, 0, NULL, (gsl_vector *) x);
|
631
|
+
vf = Data_Wrap_Struct(cgsl_vector, 0, NULL, f);
|
632
|
+
switch (RARRAY_LEN(vt_y_sigma)) {
|
633
|
+
case 2:
|
634
|
+
vt = rb_ary_entry(vt_y_sigma, 0);
|
635
|
+
vy = rb_ary_entry(vt_y_sigma, 1);
|
636
|
+
rb_funcall(proc, RBGSL_ID_call, 4, vx, vt, vy, vf);
|
637
|
+
break;
|
638
|
+
case 3:
|
639
|
+
vt = rb_ary_entry(vt_y_sigma, 0);
|
640
|
+
vy = rb_ary_entry(vt_y_sigma, 1);
|
641
|
+
vsigma = rb_ary_entry(vt_y_sigma,2);
|
642
|
+
rb_funcall(proc, RBGSL_ID_call, 5, vx, vt, vy, vsigma, vf);
|
643
|
+
break;
|
644
|
+
default:
|
645
|
+
rb_raise(rb_eArgError, "bad argument");
|
646
|
+
break;
|
647
|
+
}
|
648
|
+
return GSL_SUCCESS;
|
649
|
+
}
|
650
|
+
|
651
|
+
static int gsl_multifit_function_fdf_df(const gsl_vector *x, void *params,
|
652
|
+
gsl_matrix *J)
|
653
|
+
{
|
654
|
+
VALUE vt_y_sigma, vt, vy, vsigma, vJ, vx, proc, ary;
|
655
|
+
ary = (VALUE) params;
|
656
|
+
vt_y_sigma = rb_ary_entry(ary, 3);
|
657
|
+
proc = rb_ary_entry(ary, 1);
|
658
|
+
vx = Data_Wrap_Struct(cgsl_vector, 0, NULL, (gsl_vector *) x);
|
659
|
+
vJ = Data_Wrap_Struct(cgsl_matrix, 0, NULL, J);
|
660
|
+
switch (RARRAY_LEN(vt_y_sigma)) {
|
661
|
+
case 2:
|
662
|
+
vt = rb_ary_entry(vt_y_sigma, 0);
|
663
|
+
vy = rb_ary_entry(vt_y_sigma, 1);
|
664
|
+
rb_funcall(proc, RBGSL_ID_call, 4, vx, vt, vy, vJ);
|
665
|
+
break;
|
666
|
+
case 3:
|
667
|
+
vt = rb_ary_entry(vt_y_sigma, 0);
|
668
|
+
vy = rb_ary_entry(vt_y_sigma, 1);
|
669
|
+
vsigma = rb_ary_entry(vt_y_sigma,2);
|
670
|
+
rb_funcall(proc, RBGSL_ID_call, 5, vx, vt, vy, vsigma, vJ);
|
671
|
+
break;
|
672
|
+
default:
|
673
|
+
rb_raise(rb_eArgError, "bad argument");
|
674
|
+
break;
|
675
|
+
}
|
676
|
+
return GSL_SUCCESS;
|
677
|
+
}
|
678
|
+
|
679
|
+
static int gsl_multifit_function_fdf_fdf(const gsl_vector *x, void *params,
|
680
|
+
gsl_vector *f, gsl_matrix *J)
|
681
|
+
{
|
682
|
+
VALUE vt_y_sigma, vt, vy, vsigma, vf, vJ, vx, proc_f, proc_df, proc_fdf;
|
683
|
+
VALUE ary;
|
684
|
+
ary = (VALUE) params;
|
685
|
+
vt_y_sigma = rb_ary_entry(ary, 3);
|
686
|
+
proc_f = rb_ary_entry(ary, 0);
|
687
|
+
proc_df = rb_ary_entry(ary, 1);
|
688
|
+
proc_fdf = rb_ary_entry(ary, 2);
|
689
|
+
vx = Data_Wrap_Struct(cgsl_vector, 0, NULL, (gsl_vector *) x);
|
690
|
+
vf = Data_Wrap_Struct(cgsl_vector, 0, NULL, f);
|
691
|
+
vJ = Data_Wrap_Struct(cgsl_matrix, 0, NULL, J);
|
692
|
+
switch (RARRAY_LEN(vt_y_sigma)) {
|
693
|
+
case 2:
|
694
|
+
vt = rb_ary_entry(vt_y_sigma, 0);
|
695
|
+
vy = rb_ary_entry(vt_y_sigma, 1);
|
696
|
+
if (NIL_P(proc_fdf)) {
|
697
|
+
rb_funcall(proc_f, RBGSL_ID_call, 4, vx, vt, vy, vf);
|
698
|
+
rb_funcall(proc_df, RBGSL_ID_call, 4, vx, vt, vy, vJ);
|
699
|
+
} else
|
700
|
+
rb_funcall(proc_fdf, RBGSL_ID_call, 5, vx, vt, vy, vf, vJ);
|
701
|
+
break;
|
702
|
+
case 3:
|
703
|
+
vt = rb_ary_entry(vt_y_sigma, 0);
|
704
|
+
vy = rb_ary_entry(vt_y_sigma, 1);
|
705
|
+
vsigma = rb_ary_entry(vt_y_sigma,2);
|
706
|
+
if (NIL_P(proc_fdf)) {
|
707
|
+
rb_funcall(proc_f, RBGSL_ID_call, 5, vx, vt, vy, vsigma, vf);
|
708
|
+
rb_funcall(proc_df, RBGSL_ID_call, 5, vx, vt, vy, vsigma, vJ);
|
709
|
+
} else
|
710
|
+
rb_funcall(proc_fdf, RBGSL_ID_call, 6, vx, vt, vy, vsigma, vf, vJ);
|
711
|
+
break;
|
712
|
+
default:
|
713
|
+
rb_raise(rb_eArgError, "bad argument");
|
714
|
+
break;
|
715
|
+
}
|
716
|
+
return GSL_SUCCESS;
|
717
|
+
}
|
718
|
+
|
719
|
+
static VALUE rb_gsl_multifit_function_fdf_params(VALUE obj)
|
720
|
+
{
|
721
|
+
gsl_multifit_function_fdf *f = NULL;
|
722
|
+
Data_Get_Struct(obj, gsl_multifit_function_fdf, f);
|
723
|
+
return (VALUE) f->params;
|
724
|
+
}
|
725
|
+
|
726
|
+
static VALUE rb_gsl_multifit_function_fdf_n(VALUE obj)
|
727
|
+
{
|
728
|
+
gsl_multifit_function_fdf *f = NULL;
|
729
|
+
Data_Get_Struct(obj, gsl_multifit_function_fdf, f);
|
730
|
+
return INT2FIX(f->n);
|
731
|
+
}
|
732
|
+
|
733
|
+
static VALUE rb_gsl_multifit_function_fdf_set_n(VALUE obj, VALUE n)
|
734
|
+
{
|
735
|
+
gsl_multifit_function_fdf *f = NULL;
|
736
|
+
Data_Get_Struct(obj, gsl_multifit_function_fdf, f);
|
737
|
+
f->n = FIX2INT(n);
|
738
|
+
return obj;
|
739
|
+
}
|
740
|
+
|
741
|
+
static VALUE rb_gsl_multifit_function_fdf_p(VALUE obj)
|
742
|
+
{
|
743
|
+
gsl_multifit_function_fdf *f = NULL;
|
744
|
+
Data_Get_Struct(obj, gsl_multifit_function_fdf, f);
|
745
|
+
return INT2FIX(f->p);
|
746
|
+
}
|
747
|
+
|
748
|
+
/*****/
|
749
|
+
struct fitting_xydata {
|
750
|
+
gsl_vector *x, *y, *w;
|
751
|
+
};
|
752
|
+
|
753
|
+
/* Gaussian fit
|
754
|
+
y = y0 + A exp(-(x-x0/sigma)^2)
|
755
|
+
v[0] = y0
|
756
|
+
v[1] = A
|
757
|
+
v[2] = x0
|
758
|
+
v[3] = var = sigma^2
|
759
|
+
*/
|
760
|
+
static int Gaussian_f(const gsl_vector *v, void *data, gsl_vector *f)
|
761
|
+
{
|
762
|
+
gsl_vector *x, *y, *w;
|
763
|
+
double y0, A, x0, var, xi, yi, wi;
|
764
|
+
size_t i;
|
765
|
+
struct fitting_xydata *xydata;
|
766
|
+
xydata = (struct fitting_xydata*) data;
|
767
|
+
x = xydata->x;
|
768
|
+
y = xydata->y;
|
769
|
+
w = xydata->w;
|
770
|
+
var = gsl_vector_get(v, 3);
|
771
|
+
x0 = gsl_vector_get(v, 2);
|
772
|
+
A = gsl_vector_get(v, 1);
|
773
|
+
y0 = gsl_vector_get(v, 0);
|
774
|
+
for (i = 0; i < x->size; i++) {
|
775
|
+
xi = gsl_vector_get(x, i);
|
776
|
+
yi = gsl_vector_get(y, i);
|
777
|
+
if (w) wi = gsl_vector_get(w, i);
|
778
|
+
else wi = 1.0;
|
779
|
+
gsl_vector_set(f, i, (A*exp(-(xi - x0)*(xi - x0)/var/2.0) + y0 - yi)*wi);
|
780
|
+
}
|
781
|
+
return GSL_SUCCESS;
|
782
|
+
}
|
783
|
+
|
784
|
+
static int Gaussian_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
785
|
+
{
|
786
|
+
double A, x0, var, xi, yy, wi;
|
787
|
+
size_t i;
|
788
|
+
struct fitting_xydata *xydata;
|
789
|
+
gsl_vector *x, *w;
|
790
|
+
xydata = (struct fitting_xydata*) data;
|
791
|
+
x = xydata->x;
|
792
|
+
w = xydata->w;
|
793
|
+
var = gsl_vector_get(v, 3);
|
794
|
+
x0 = gsl_vector_get(v, 2);
|
795
|
+
A = gsl_vector_get(v, 1);
|
796
|
+
for (i = 0; i < x->size; i++) {
|
797
|
+
xi = gsl_vector_get(x, i);
|
798
|
+
if (w) wi = gsl_vector_get(w, i);
|
799
|
+
else wi = 1.0;
|
800
|
+
yy = exp(-(xi - x0)*(xi - x0)/var/2.0);
|
801
|
+
gsl_matrix_set(J, i, 3, A*yy*(xi - x0)*(xi - x0)/2/var/var*wi);
|
802
|
+
gsl_matrix_set(J, i, 2, A*yy*(xi - x0)/var*wi);
|
803
|
+
gsl_matrix_set(J, i, 1, yy*wi);
|
804
|
+
gsl_matrix_set(J, i, 0, 1.0*wi);
|
805
|
+
}
|
806
|
+
return GSL_SUCCESS;
|
807
|
+
}
|
808
|
+
|
809
|
+
static int Gaussian_fdf(const gsl_vector *v, void *data,
|
810
|
+
gsl_vector *f, gsl_matrix *J)
|
811
|
+
{
|
812
|
+
Gaussian_f(v, data, f);
|
813
|
+
Gaussian_df(v, data, J);
|
814
|
+
return GSL_SUCCESS;
|
815
|
+
}
|
816
|
+
|
817
|
+
/* 2 Gaussian fit
|
818
|
+
y = y0 + A1 exp(-(x-x01/sigma1)^2) + A2 exp(-(x-x02/sigma2)^2)
|
819
|
+
v[0] = y0
|
820
|
+
v[1] = A1
|
821
|
+
v[2] = x01
|
822
|
+
v[3] = var1 = sigma1^2
|
823
|
+
v[4] = A2
|
824
|
+
v[5] = x02
|
825
|
+
v[6] = var2 = sigma2^2
|
826
|
+
*/
|
827
|
+
static int Gaussian_2peaks_f(const gsl_vector *v, void *data, gsl_vector *f)
|
828
|
+
{
|
829
|
+
gsl_vector *x, *y, *w;
|
830
|
+
double y0, A1, x01, var1, A2, x02, var2, xi, yi, wi;
|
831
|
+
size_t i;
|
832
|
+
struct fitting_xydata *xydata;
|
833
|
+
xydata = (struct fitting_xydata*) data;
|
834
|
+
x = xydata->x;
|
835
|
+
y = xydata->y;
|
836
|
+
w = xydata->w;
|
837
|
+
y0 = gsl_vector_get(v, 0);
|
838
|
+
A1 = gsl_vector_get(v, 1);
|
839
|
+
x01 = gsl_vector_get(v, 2);
|
840
|
+
var1 = gsl_vector_get(v, 3);
|
841
|
+
A2 = gsl_vector_get(v, 4);
|
842
|
+
x02 = gsl_vector_get(v, 5);
|
843
|
+
var2 = gsl_vector_get(v, 6);
|
844
|
+
for (i = 0; i < x->size; i++) {
|
845
|
+
xi = gsl_vector_get(x, i);
|
846
|
+
yi = gsl_vector_get(y, i);
|
847
|
+
if (w) wi = gsl_vector_get(w, i);
|
848
|
+
else wi = 1.0;
|
849
|
+
gsl_vector_set(f, i, (A1*exp(-(xi - x01)*(xi - x01)/var1/2.0) + A2*exp(-(xi - x02)*(xi - x02)/var2/2.0) + y0 - yi)*wi);
|
850
|
+
}
|
851
|
+
return GSL_SUCCESS;
|
852
|
+
}
|
853
|
+
|
854
|
+
static int Gaussian_2peaks_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
855
|
+
{
|
856
|
+
double A1, x01, var1, A2, x02, var2, xi, yy, wi;
|
857
|
+
size_t i;
|
858
|
+
struct fitting_xydata *xydata;
|
859
|
+
gsl_vector *x, *w;
|
860
|
+
xydata = (struct fitting_xydata*) data;
|
861
|
+
x = xydata->x;
|
862
|
+
w = xydata->w;
|
863
|
+
A1 = gsl_vector_get(v, 1);
|
864
|
+
x01 = gsl_vector_get(v, 2);
|
865
|
+
var1 = gsl_vector_get(v, 3);
|
866
|
+
A2 = gsl_vector_get(v, 4);
|
867
|
+
x02 = gsl_vector_get(v, 5);
|
868
|
+
var2 = gsl_vector_get(v, 6);
|
869
|
+
for (i = 0; i < x->size; i++) {
|
870
|
+
xi = gsl_vector_get(x, i);
|
871
|
+
if (w) wi = gsl_vector_get(w, i);
|
872
|
+
else wi = 1.0;
|
873
|
+
yy = exp(-(xi - x01)*(xi - x01)/var1/2.0);
|
874
|
+
gsl_matrix_set(J, i, 0, 1.0*wi);
|
875
|
+
gsl_matrix_set(J, i, 1, yy*wi);
|
876
|
+
gsl_matrix_set(J, i, 2, A1*yy*(xi - x01)/var1*wi);
|
877
|
+
gsl_matrix_set(J, i, 3, A1*yy*(xi - x01)*(xi - x01)/2/var1/var1*wi);
|
878
|
+
|
879
|
+
yy = exp(-(xi - x02)*(xi - x02)/var2/2.0);
|
880
|
+
gsl_matrix_set(J, i, 4, yy*wi);
|
881
|
+
gsl_matrix_set(J, i, 5, A2*yy*(xi - x02)/var2*wi);
|
882
|
+
gsl_matrix_set(J, i, 6, A2*yy*(xi - x02)*(xi - x02)/2/var2/var2*wi);
|
883
|
+
}
|
884
|
+
return GSL_SUCCESS;
|
885
|
+
}
|
886
|
+
|
887
|
+
static int Gaussian_2peaks_fdf(const gsl_vector *v, void *data,
|
888
|
+
gsl_vector *f, gsl_matrix *J)
|
889
|
+
{
|
890
|
+
Gaussian_2peaks_f(v, data, f);
|
891
|
+
Gaussian_2peaks_df(v, data, J);
|
892
|
+
return GSL_SUCCESS;
|
893
|
+
}
|
894
|
+
|
895
|
+
/* Exponential fit
|
896
|
+
y = y0 + A exp(-bx)
|
897
|
+
v[0] = y0
|
898
|
+
v[1] = A
|
899
|
+
v[2] = b
|
900
|
+
*/
|
901
|
+
static int Exponential_f(const gsl_vector *v, void *data, gsl_vector *f)
|
902
|
+
{
|
903
|
+
gsl_vector *x, *y, *w;
|
904
|
+
double y0, A, b, xi, yi, wi;
|
905
|
+
size_t i;
|
906
|
+
struct fitting_xydata *xydata;
|
907
|
+
xydata = (struct fitting_xydata*) data;
|
908
|
+
x = xydata->x;
|
909
|
+
y = xydata->y;
|
910
|
+
w = xydata->w;
|
911
|
+
y0 = gsl_vector_get(v, 0);
|
912
|
+
A = gsl_vector_get(v, 1);
|
913
|
+
b = gsl_vector_get(v, 2);
|
914
|
+
for (i = 0; i < x->size; i++) {
|
915
|
+
xi = gsl_vector_get(x, i);
|
916
|
+
if (w) wi = gsl_vector_get(w, i);
|
917
|
+
else wi = 1.0;
|
918
|
+
yi = gsl_vector_get(y, i);
|
919
|
+
gsl_vector_set(f, i, (A*exp(-b*xi) + y0 - yi)*wi);
|
920
|
+
}
|
921
|
+
return GSL_SUCCESS;
|
922
|
+
}
|
923
|
+
|
924
|
+
static int Exponential_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
925
|
+
{
|
926
|
+
double A, b, xi, yy, wi;
|
927
|
+
size_t i;
|
928
|
+
struct fitting_xydata *xydata;
|
929
|
+
gsl_vector *x, *w;
|
930
|
+
xydata = (struct fitting_xydata*) data;
|
931
|
+
x = xydata->x;
|
932
|
+
w = xydata->w;
|
933
|
+
A = gsl_vector_get(v, 1);
|
934
|
+
b = gsl_vector_get(v, 2);
|
935
|
+
for (i = 0; i < x->size; i++) {
|
936
|
+
xi = gsl_vector_get(x, i);
|
937
|
+
if (w) wi = gsl_vector_get(w, i);
|
938
|
+
else wi = 1.0;
|
939
|
+
yy = exp(-xi*b);
|
940
|
+
gsl_matrix_set(J, i, 0, 1.0*wi);
|
941
|
+
gsl_matrix_set(J, i, 1, yy*wi);
|
942
|
+
gsl_matrix_set(J, i, 2, -A*yy*xi*wi);
|
943
|
+
}
|
944
|
+
return GSL_SUCCESS;
|
945
|
+
}
|
946
|
+
|
947
|
+
static int Exponential_fdf(const gsl_vector *v, void *data,
|
948
|
+
gsl_vector *f, gsl_matrix *J)
|
949
|
+
{
|
950
|
+
Exponential_f(v, data, f);
|
951
|
+
Exponential_df(v, data, J);
|
952
|
+
return GSL_SUCCESS;
|
953
|
+
}
|
954
|
+
|
955
|
+
|
956
|
+
/* Double Exponential fit
|
957
|
+
y = y0 + A1 exp(-b1 x) + A2 exp(-b2 x)
|
958
|
+
v[0] = y0
|
959
|
+
v[1] = A1
|
960
|
+
v[2] = b1
|
961
|
+
v[3] = A2
|
962
|
+
v[4] = b2
|
963
|
+
*/
|
964
|
+
static int DblExponential_f(const gsl_vector *v, void *data, gsl_vector *f)
|
965
|
+
{
|
966
|
+
gsl_vector *x, *y, *w;
|
967
|
+
double y0, A1, b1, A2, b2, xi, yi, wi;
|
968
|
+
size_t i;
|
969
|
+
struct fitting_xydata *xydata;
|
970
|
+
xydata = (struct fitting_xydata*) data;
|
971
|
+
x = xydata->x;
|
972
|
+
y = xydata->y;
|
973
|
+
w = xydata->w;
|
974
|
+
y0 = gsl_vector_get(v, 0);
|
975
|
+
A1 = gsl_vector_get(v, 1);
|
976
|
+
b1 = gsl_vector_get(v, 2);
|
977
|
+
A2 = gsl_vector_get(v, 3);
|
978
|
+
b2 = gsl_vector_get(v, 4);
|
979
|
+
for (i = 0; i < x->size; i++) {
|
980
|
+
xi = gsl_vector_get(x, i);
|
981
|
+
if (w) wi = gsl_vector_get(w, i);
|
982
|
+
else wi = 1.0;
|
983
|
+
yi = gsl_vector_get(y, i);
|
984
|
+
gsl_vector_set(f, i, (A1*exp(-b1*xi) + A2*exp(-b2*xi) + y0 - yi)*wi);
|
985
|
+
}
|
986
|
+
return GSL_SUCCESS;
|
987
|
+
}
|
988
|
+
|
989
|
+
static int DblExponential_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
990
|
+
{
|
991
|
+
double A1, b1, A2, b2, xi, yy1, yy2, wi;
|
992
|
+
size_t i;
|
993
|
+
struct fitting_xydata *xydata;
|
994
|
+
gsl_vector *x, *w;
|
995
|
+
xydata = (struct fitting_xydata*) data;
|
996
|
+
x = xydata->x;
|
997
|
+
w = xydata->w;
|
998
|
+
A1 = gsl_vector_get(v, 1);
|
999
|
+
b1 = gsl_vector_get(v, 2);
|
1000
|
+
A2 = gsl_vector_get(v, 3);
|
1001
|
+
b2 = gsl_vector_get(v, 4);
|
1002
|
+
for (i = 0; i < x->size; i++) {
|
1003
|
+
xi = gsl_vector_get(x, i);
|
1004
|
+
if (w) wi = gsl_vector_get(w, i);
|
1005
|
+
else wi = 1.0;
|
1006
|
+
yy1 = exp(-xi*b1);
|
1007
|
+
yy2 = exp(-xi*b2);
|
1008
|
+
gsl_matrix_set(J, i, 0, 1.0*wi);
|
1009
|
+
gsl_matrix_set(J, i, 1, yy1*wi);
|
1010
|
+
gsl_matrix_set(J, i, 2, -A1*yy1*xi*wi);
|
1011
|
+
gsl_matrix_set(J, i, 3, yy2*wi);
|
1012
|
+
gsl_matrix_set(J, i, 4, -A2*yy2*xi*wi);
|
1013
|
+
}
|
1014
|
+
return GSL_SUCCESS;
|
1015
|
+
}
|
1016
|
+
|
1017
|
+
static int DblExponential_fdf(const gsl_vector *v, void *data,
|
1018
|
+
gsl_vector *f, gsl_matrix *J)
|
1019
|
+
{
|
1020
|
+
DblExponential_f(v, data, f);
|
1021
|
+
DblExponential_df(v, data, J);
|
1022
|
+
return GSL_SUCCESS;
|
1023
|
+
}
|
1024
|
+
|
1025
|
+
/* Lorentzian fit
|
1026
|
+
y = y0 + A/((x-x0)^2 + B)
|
1027
|
+
v[0] = y0
|
1028
|
+
v[1] = A
|
1029
|
+
v[2] = x0
|
1030
|
+
v[3] = B
|
1031
|
+
*/
|
1032
|
+
static int Lorentzian_f(const gsl_vector *v, void *data, gsl_vector *f)
|
1033
|
+
{
|
1034
|
+
gsl_vector *x, *y, *w;
|
1035
|
+
double y0, A, x0, B, xi, yi, wi;
|
1036
|
+
size_t i;
|
1037
|
+
struct fitting_xydata *xydata;
|
1038
|
+
xydata = (struct fitting_xydata*) data;
|
1039
|
+
x = xydata->x;
|
1040
|
+
y = xydata->y;
|
1041
|
+
w = xydata->w;
|
1042
|
+
y0 = gsl_vector_get(v, 0);
|
1043
|
+
A = gsl_vector_get(v, 1);
|
1044
|
+
x0 = gsl_vector_get(v, 2);
|
1045
|
+
B = gsl_vector_get(v, 3);
|
1046
|
+
for (i = 0; i < x->size; i++) {
|
1047
|
+
xi = gsl_vector_get(x, i);
|
1048
|
+
if (w) wi = gsl_vector_get(w, i);
|
1049
|
+
else wi = 1.0;
|
1050
|
+
yi = gsl_vector_get(y, i);
|
1051
|
+
gsl_vector_set(f, i, (A/(gsl_pow_2(xi-x0)+B) + y0 - yi)*wi);
|
1052
|
+
}
|
1053
|
+
return GSL_SUCCESS;
|
1054
|
+
}
|
1055
|
+
|
1056
|
+
static int Lorentzian_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
1057
|
+
{
|
1058
|
+
double A, B, x0, xi, yy, wi;
|
1059
|
+
size_t i;
|
1060
|
+
struct fitting_xydata *xydata;
|
1061
|
+
gsl_vector *x, *w;
|
1062
|
+
xydata = (struct fitting_xydata*) data;
|
1063
|
+
x = xydata->x;
|
1064
|
+
w = xydata->w;
|
1065
|
+
A = gsl_vector_get(v, 1);
|
1066
|
+
x0 = gsl_vector_get(v, 2);
|
1067
|
+
B = gsl_vector_get(v, 3);
|
1068
|
+
for (i = 0; i < x->size; i++) {
|
1069
|
+
xi = gsl_vector_get(x, i);
|
1070
|
+
if (w) wi = gsl_vector_get(w, i);
|
1071
|
+
else wi = 1.0;
|
1072
|
+
yy = gsl_pow_2(xi-x0)+B;
|
1073
|
+
gsl_matrix_set(J, i, 0, 1.0*wi);
|
1074
|
+
gsl_matrix_set(J, i, 1, 1.0/yy*wi);
|
1075
|
+
gsl_matrix_set(J, i, 2, 2.0*A*(xi-x0)/yy/yy*wi);
|
1076
|
+
gsl_matrix_set(J, i, 3, -A/yy/yy*wi);
|
1077
|
+
}
|
1078
|
+
return GSL_SUCCESS;
|
1079
|
+
}
|
1080
|
+
|
1081
|
+
static int Lorentzian_fdf(const gsl_vector *v, void *data,
|
1082
|
+
gsl_vector *f, gsl_matrix *J)
|
1083
|
+
{
|
1084
|
+
Lorentzian_f(v, data, f);
|
1085
|
+
Lorentzian_df(v, data, J);
|
1086
|
+
return GSL_SUCCESS;
|
1087
|
+
}
|
1088
|
+
|
1089
|
+
/* Sinusoldal fit
|
1090
|
+
y = y0 + A sin(fc x + phi)
|
1091
|
+
v[0] = y0
|
1092
|
+
v[1] = A
|
1093
|
+
v[2] = fc
|
1094
|
+
v[3] = phi
|
1095
|
+
*/
|
1096
|
+
static int Sin_f(const gsl_vector *v, void *data, gsl_vector *f)
|
1097
|
+
{
|
1098
|
+
gsl_vector *x, *y, *w;
|
1099
|
+
double y0, A, fc, phi, xi, yi, wi;
|
1100
|
+
size_t i;
|
1101
|
+
struct fitting_xydata *xydata;
|
1102
|
+
xydata = (struct fitting_xydata*) data;
|
1103
|
+
x = xydata->x;
|
1104
|
+
y = xydata->y;
|
1105
|
+
w = xydata->w;
|
1106
|
+
y0 = gsl_vector_get(v, 0);
|
1107
|
+
A = gsl_vector_get(v, 1);
|
1108
|
+
fc = gsl_vector_get(v, 2);
|
1109
|
+
phi = gsl_vector_get(v, 3);
|
1110
|
+
for (i = 0; i < x->size; i++) {
|
1111
|
+
xi = gsl_vector_get(x, i);
|
1112
|
+
if (w) wi = gsl_vector_get(w, i);
|
1113
|
+
else wi = 1.0;
|
1114
|
+
yi = gsl_vector_get(y, i);
|
1115
|
+
gsl_vector_set(f, i, (A*sin(fc*xi+phi) + y0 - yi)*wi);
|
1116
|
+
}
|
1117
|
+
return GSL_SUCCESS;
|
1118
|
+
}
|
1119
|
+
|
1120
|
+
static int Sin_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
1121
|
+
{
|
1122
|
+
double A, fc, phi, xi, ys, yc, wi;
|
1123
|
+
size_t i;
|
1124
|
+
struct fitting_xydata *xydata;
|
1125
|
+
gsl_vector *x, *w;
|
1126
|
+
xydata = (struct fitting_xydata*) data;
|
1127
|
+
x = xydata->x;
|
1128
|
+
w = xydata->w;
|
1129
|
+
A = gsl_vector_get(v, 1);
|
1130
|
+
fc = gsl_vector_get(v, 2);
|
1131
|
+
phi = gsl_vector_get(v, 3);
|
1132
|
+
for (i = 0; i < x->size; i++) {
|
1133
|
+
xi = gsl_vector_get(x, i);
|
1134
|
+
if (w) wi = gsl_vector_get(w, i);
|
1135
|
+
else wi = 1.0;
|
1136
|
+
ys = sin(fc*xi + phi);
|
1137
|
+
yc = cos(fc*xi + phi);
|
1138
|
+
gsl_matrix_set(J, i, 0, 1.0*wi);
|
1139
|
+
gsl_matrix_set(J, i, 1, ys*wi);
|
1140
|
+
gsl_matrix_set(J, i, 2, A*yc*xi*wi);
|
1141
|
+
gsl_matrix_set(J, i, 3, A*yc*wi);
|
1142
|
+
}
|
1143
|
+
return GSL_SUCCESS;
|
1144
|
+
}
|
1145
|
+
|
1146
|
+
static int Sin_fdf(const gsl_vector *v, void *data,
|
1147
|
+
gsl_vector *f, gsl_matrix *J)
|
1148
|
+
{
|
1149
|
+
Sin_f(v, data, f);
|
1150
|
+
Sin_df(v, data, J);
|
1151
|
+
return GSL_SUCCESS;
|
1152
|
+
}
|
1153
|
+
|
1154
|
+
/* Hill's equation fit
|
1155
|
+
y = y0 + (m - y0)/(1 + (xhalf/x)^r)
|
1156
|
+
v[0] = y0
|
1157
|
+
v[1] = m
|
1158
|
+
v[2] = xhalf
|
1159
|
+
v[3] = r
|
1160
|
+
*/
|
1161
|
+
static int Hill_f(const gsl_vector *v, void *data, gsl_vector *f)
|
1162
|
+
{
|
1163
|
+
gsl_vector *x, *y, *w;
|
1164
|
+
double y0, m, xhalf, r, xi, yi, wi;
|
1165
|
+
size_t i;
|
1166
|
+
struct fitting_xydata *xydata;
|
1167
|
+
xydata = (struct fitting_xydata*) data;
|
1168
|
+
x = xydata->x;
|
1169
|
+
y = xydata->y;
|
1170
|
+
w = xydata->w;
|
1171
|
+
y0 = gsl_vector_get(v, 0);
|
1172
|
+
m = gsl_vector_get(v, 1);
|
1173
|
+
xhalf = gsl_vector_get(v, 2);
|
1174
|
+
r = gsl_vector_get(v, 3);
|
1175
|
+
for (i = 0; i < x->size; i++) {
|
1176
|
+
xi = gsl_vector_get(x, i);
|
1177
|
+
if (w) wi = gsl_vector_get(w, i);
|
1178
|
+
else wi = 1.0;
|
1179
|
+
yi = gsl_vector_get(y, i);
|
1180
|
+
gsl_vector_set(f, i, ((m-y0)/(1.0+pow(xhalf/xi, r)) + y0 - yi)*wi);
|
1181
|
+
}
|
1182
|
+
return GSL_SUCCESS;
|
1183
|
+
}
|
1184
|
+
|
1185
|
+
static int Hill_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
1186
|
+
{
|
1187
|
+
double y0, m, xhalf, r, yy, xi, wi, a;
|
1188
|
+
size_t i;
|
1189
|
+
struct fitting_xydata *xydata;
|
1190
|
+
gsl_vector *x, *w;
|
1191
|
+
xydata = (struct fitting_xydata*) data;
|
1192
|
+
x = xydata->x;
|
1193
|
+
w = xydata->w;
|
1194
|
+
y0 = gsl_vector_get(v, 0);
|
1195
|
+
m = gsl_vector_get(v, 1);
|
1196
|
+
xhalf = gsl_vector_get(v, 2);
|
1197
|
+
r = gsl_vector_get(v, 3);
|
1198
|
+
for (i = 0; i < x->size; i++) {
|
1199
|
+
xi = gsl_vector_get(x, i);
|
1200
|
+
if (w) wi = gsl_vector_get(w, i);
|
1201
|
+
else wi = 1.0;
|
1202
|
+
a = pow(xhalf/xi, r);
|
1203
|
+
yy = (1.0 + a);
|
1204
|
+
gsl_matrix_set(J, i, 0, (1.0 - 1.0/yy)*wi);
|
1205
|
+
gsl_matrix_set(J, i, 1, 1.0/yy*wi);
|
1206
|
+
gsl_matrix_set(J, i, 2, -(m-y0)*r/xhalf*a/yy/yy*wi);
|
1207
|
+
gsl_matrix_set(J, i, 3, -(m-y0)/yy/yy*a*log(xhalf/xi)*wi);
|
1208
|
+
}
|
1209
|
+
return GSL_SUCCESS;
|
1210
|
+
}
|
1211
|
+
|
1212
|
+
static int Hill_fdf(const gsl_vector *v, void *data,
|
1213
|
+
gsl_vector *f, gsl_matrix *J)
|
1214
|
+
{
|
1215
|
+
Hill_f(v, data, f);
|
1216
|
+
Hill_df(v, data, J);
|
1217
|
+
return GSL_SUCCESS;
|
1218
|
+
}
|
1219
|
+
|
1220
|
+
/* Sigmoidal fit
|
1221
|
+
y = y0 + m/(1 + exp((x0-x)/r))
|
1222
|
+
v[0] = y0
|
1223
|
+
v[1] = m
|
1224
|
+
v[2] = x0
|
1225
|
+
v[3] = r
|
1226
|
+
*/
|
1227
|
+
static int Sigmoid_f(const gsl_vector *v, void *data, gsl_vector *f)
|
1228
|
+
{
|
1229
|
+
gsl_vector *x, *y, *w;
|
1230
|
+
double y0, m, x0, r, xi, yi, wi;
|
1231
|
+
size_t i;
|
1232
|
+
struct fitting_xydata *xydata;
|
1233
|
+
xydata = (struct fitting_xydata*) data;
|
1234
|
+
x = xydata->x;
|
1235
|
+
y = xydata->y;
|
1236
|
+
w = xydata->w;
|
1237
|
+
y0 = gsl_vector_get(v, 0);
|
1238
|
+
m = gsl_vector_get(v, 1);
|
1239
|
+
x0 = gsl_vector_get(v, 2);
|
1240
|
+
r = gsl_vector_get(v, 3);
|
1241
|
+
for (i = 0; i < x->size; i++) {
|
1242
|
+
xi = gsl_vector_get(x, i);
|
1243
|
+
if (w) wi = gsl_vector_get(w, i);
|
1244
|
+
else wi = 1.0;
|
1245
|
+
yi = gsl_vector_get(y, i);
|
1246
|
+
gsl_vector_set(f, i, (m/(1.0+exp((x0-xi)/r)) + y0 - yi)*wi);
|
1247
|
+
}
|
1248
|
+
return GSL_SUCCESS;
|
1249
|
+
}
|
1250
|
+
|
1251
|
+
static int Sigmoid_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
1252
|
+
{
|
1253
|
+
double m, x0, r, xi, wi, a, yy;
|
1254
|
+
size_t i;
|
1255
|
+
struct fitting_xydata *xydata;
|
1256
|
+
gsl_vector *x, *w;
|
1257
|
+
xydata = (struct fitting_xydata*) data;
|
1258
|
+
x = xydata->x;
|
1259
|
+
w = xydata->w;
|
1260
|
+
m = gsl_vector_get(v, 1);
|
1261
|
+
x0 = gsl_vector_get(v, 2);
|
1262
|
+
r = gsl_vector_get(v, 3);
|
1263
|
+
for (i = 0; i < x->size; i++) {
|
1264
|
+
xi = gsl_vector_get(x, i);
|
1265
|
+
if (w) wi = gsl_vector_get(w, i);
|
1266
|
+
else wi = 1.0;
|
1267
|
+
a = exp((x0 - xi)/r);
|
1268
|
+
yy = 1.0 + a;
|
1269
|
+
gsl_matrix_set(J, i, 0, wi);
|
1270
|
+
gsl_matrix_set(J, i, 1, 1.0/yy*wi);
|
1271
|
+
gsl_matrix_set(J, i, 2, -m*a/r/yy/yy*wi);
|
1272
|
+
gsl_matrix_set(J, i, 3, m*a*(x0-xi)/r/r/yy/yy*wi);
|
1273
|
+
}
|
1274
|
+
return GSL_SUCCESS;
|
1275
|
+
}
|
1276
|
+
|
1277
|
+
static int Sigmoid_fdf(const gsl_vector *v, void *data,
|
1278
|
+
gsl_vector *f, gsl_matrix *J)
|
1279
|
+
{
|
1280
|
+
Sigmoid_f(v, data, f);
|
1281
|
+
Sigmoid_df(v, data, J);
|
1282
|
+
return GSL_SUCCESS;
|
1283
|
+
}
|
1284
|
+
|
1285
|
+
|
1286
|
+
/* Power-law fit
|
1287
|
+
y = y0 + A x^r
|
1288
|
+
v[0] = y0
|
1289
|
+
v[1] = A
|
1290
|
+
v[2] = r
|
1291
|
+
*/
|
1292
|
+
static int Power_f(const gsl_vector *v, void *data, gsl_vector *f)
|
1293
|
+
{
|
1294
|
+
gsl_vector *x, *y, *w;
|
1295
|
+
double y0, A, r, xi, yi, wi;
|
1296
|
+
size_t i;
|
1297
|
+
struct fitting_xydata *xydata;
|
1298
|
+
xydata = (struct fitting_xydata*) data;
|
1299
|
+
x = xydata->x;
|
1300
|
+
y = xydata->y;
|
1301
|
+
w = xydata->w;
|
1302
|
+
y0 = gsl_vector_get(v, 0);
|
1303
|
+
A = gsl_vector_get(v, 1);
|
1304
|
+
r = gsl_vector_get(v, 2);
|
1305
|
+
for (i = 0; i < x->size; i++) {
|
1306
|
+
xi = gsl_vector_get(x, i);
|
1307
|
+
if (w) wi = gsl_vector_get(w, i);
|
1308
|
+
else wi = 1.0;
|
1309
|
+
yi = gsl_vector_get(y, i);
|
1310
|
+
gsl_vector_set(f, i, (A*pow(xi, r) + y0 - yi)*wi);
|
1311
|
+
}
|
1312
|
+
return GSL_SUCCESS;
|
1313
|
+
}
|
1314
|
+
|
1315
|
+
static int Power_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
1316
|
+
{
|
1317
|
+
double A, r, xi, wi, a;
|
1318
|
+
size_t i;
|
1319
|
+
struct fitting_xydata *xydata;
|
1320
|
+
gsl_vector *x, *w;
|
1321
|
+
xydata = (struct fitting_xydata*) data;
|
1322
|
+
x = xydata->x;
|
1323
|
+
w = xydata->w;
|
1324
|
+
A = gsl_vector_get(v, 1);
|
1325
|
+
r = gsl_vector_get(v, 2);
|
1326
|
+
for (i = 0; i < x->size; i++) {
|
1327
|
+
xi = gsl_vector_get(x, i);
|
1328
|
+
if (w) wi = gsl_vector_get(w, i);
|
1329
|
+
else wi = 1.0;
|
1330
|
+
a = pow(xi, r);
|
1331
|
+
gsl_matrix_set(J, i, 0, wi);
|
1332
|
+
gsl_matrix_set(J, i, 1, a*wi);
|
1333
|
+
gsl_matrix_set(J, i, 2, A*a*log(xi)*wi);
|
1334
|
+
|
1335
|
+
}
|
1336
|
+
return GSL_SUCCESS;
|
1337
|
+
}
|
1338
|
+
|
1339
|
+
static int Power_fdf(const gsl_vector *v, void *data,
|
1340
|
+
gsl_vector *f, gsl_matrix *J)
|
1341
|
+
{
|
1342
|
+
Power_f(v, data, f);
|
1343
|
+
Power_df(v, data, J);
|
1344
|
+
return GSL_SUCCESS;
|
1345
|
+
}
|
1346
|
+
|
1347
|
+
|
1348
|
+
/* Lognormal fit
|
1349
|
+
y = y0 + A exp[ -(log(x/x0)/width)^2 ]
|
1350
|
+
v[0] = y0
|
1351
|
+
v[1] = A
|
1352
|
+
v[2] = x0
|
1353
|
+
v[3] = width
|
1354
|
+
*/
|
1355
|
+
static int Lognormal_f(const gsl_vector *v, void *data, gsl_vector *f)
|
1356
|
+
{
|
1357
|
+
gsl_vector *x, *y, *w;
|
1358
|
+
double y0, A, x0, width, xi, yi, wi;
|
1359
|
+
size_t i;
|
1360
|
+
struct fitting_xydata *xydata;
|
1361
|
+
xydata = (struct fitting_xydata*) data;
|
1362
|
+
x = xydata->x;
|
1363
|
+
y = xydata->y;
|
1364
|
+
w = xydata->w;
|
1365
|
+
y0 = gsl_vector_get(v, 0);
|
1366
|
+
A = gsl_vector_get(v, 1);
|
1367
|
+
x0 = gsl_vector_get(v, 2);
|
1368
|
+
width = gsl_vector_get(v, 3);
|
1369
|
+
for (i = 0; i < x->size; i++) {
|
1370
|
+
xi = gsl_vector_get(x, i);
|
1371
|
+
if (w) wi = gsl_vector_get(w, i);
|
1372
|
+
else wi = 1.0;
|
1373
|
+
yi = gsl_vector_get(y, i);
|
1374
|
+
gsl_vector_set(f, i, (A*exp(-gsl_pow_2(log(xi/x0)/width)) + y0 - yi)*wi);
|
1375
|
+
}
|
1376
|
+
return GSL_SUCCESS;
|
1377
|
+
}
|
1378
|
+
|
1379
|
+
static int Lognormal_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
1380
|
+
{
|
1381
|
+
double A, x0, width, xi, wi, a, b;
|
1382
|
+
size_t i;
|
1383
|
+
struct fitting_xydata *xydata;
|
1384
|
+
gsl_vector *x, *w;
|
1385
|
+
xydata = (struct fitting_xydata*) data;
|
1386
|
+
x = xydata->x;
|
1387
|
+
w = xydata->w;
|
1388
|
+
A = gsl_vector_get(v, 1);
|
1389
|
+
x0 = gsl_vector_get(v, 2);
|
1390
|
+
width = gsl_vector_get(v, 3);
|
1391
|
+
for (i = 0; i < x->size; i++) {
|
1392
|
+
xi = gsl_vector_get(x, i);
|
1393
|
+
if (w) wi = gsl_vector_get(w, i);
|
1394
|
+
else wi = 1.0;
|
1395
|
+
a = log(xi/x0)/width;
|
1396
|
+
b = exp(-a*a);
|
1397
|
+
gsl_matrix_set(J, i, 0, wi);
|
1398
|
+
gsl_matrix_set(J, i, 1, b*wi);
|
1399
|
+
gsl_matrix_set(J, i, 2, 2.0*A*b*a*a*a/width/x0*wi);
|
1400
|
+
gsl_matrix_set(J, i, 3, 2.0*A*b*a*a*a*a/width*wi);
|
1401
|
+
}
|
1402
|
+
return GSL_SUCCESS;
|
1403
|
+
}
|
1404
|
+
|
1405
|
+
static int Lognormal_fdf(const gsl_vector *v, void *data,
|
1406
|
+
gsl_vector *f, gsl_matrix *J)
|
1407
|
+
{
|
1408
|
+
Lognormal_f(v, data, f);
|
1409
|
+
Lognormal_df(v, data, J);
|
1410
|
+
return GSL_SUCCESS;
|
1411
|
+
}
|
1412
|
+
|
1413
|
+
/* Rayleigh fit
|
1414
|
+
y = A exp(-x*x/2/var)
|
1415
|
+
v[0] = A
|
1416
|
+
v[1] = var = sigma^2
|
1417
|
+
*/
|
1418
|
+
static int Rayleigh_f(const gsl_vector *v, void *data, gsl_vector *f)
|
1419
|
+
{
|
1420
|
+
gsl_vector *x, *y, *w;
|
1421
|
+
double A, var, xi, yi, wi;
|
1422
|
+
size_t i;
|
1423
|
+
struct fitting_xydata *xydata;
|
1424
|
+
xydata = (struct fitting_xydata*) data;
|
1425
|
+
x = xydata->x;
|
1426
|
+
y = xydata->y;
|
1427
|
+
w = xydata->w;
|
1428
|
+
var = gsl_vector_get(v, 1);
|
1429
|
+
A = gsl_vector_get(v, 0);
|
1430
|
+
for (i = 0; i < x->size; i++) {
|
1431
|
+
xi = gsl_vector_get(x, i);
|
1432
|
+
yi = gsl_vector_get(y, i);
|
1433
|
+
if (w) wi = gsl_vector_get(w, i);
|
1434
|
+
else wi = 1.0;
|
1435
|
+
gsl_vector_set(f, i, (A*xi*exp(-xi*xi/var/2.0) - yi)*wi);
|
1436
|
+
}
|
1437
|
+
return GSL_SUCCESS;
|
1438
|
+
}
|
1439
|
+
|
1440
|
+
static int Rayleigh_df(const gsl_vector *v, void *data, gsl_matrix *J)
|
1441
|
+
{
|
1442
|
+
double A, var, xi, yy, wi;
|
1443
|
+
size_t i;
|
1444
|
+
struct fitting_xydata *xydata;
|
1445
|
+
gsl_vector *x, *w;
|
1446
|
+
xydata = (struct fitting_xydata*) data;
|
1447
|
+
x = xydata->x;
|
1448
|
+
w = xydata->w;
|
1449
|
+
var = gsl_vector_get(v, 1);
|
1450
|
+
A = gsl_vector_get(v, 0);
|
1451
|
+
for (i = 0; i < x->size; i++) {
|
1452
|
+
xi = gsl_vector_get(x, i);
|
1453
|
+
if (w) wi = gsl_vector_get(w, i);
|
1454
|
+
else wi = 1.0;
|
1455
|
+
yy = xi*exp(-xi*xi/var/2.0);
|
1456
|
+
gsl_matrix_set(J, i, 1, A*yy*xi*xi/2/var/var*wi);
|
1457
|
+
gsl_matrix_set(J, i, 0, yy*wi);
|
1458
|
+
}
|
1459
|
+
return GSL_SUCCESS;
|
1460
|
+
}
|
1461
|
+
|
1462
|
+
static int Rayleigh_fdf(const gsl_vector *v, void *data,
|
1463
|
+
gsl_vector *f, gsl_matrix *J)
|
1464
|
+
{
|
1465
|
+
Rayleigh_f(v, data, f);
|
1466
|
+
Rayleigh_df(v, data, J);
|
1467
|
+
return GSL_SUCCESS;
|
1468
|
+
}
|
1469
|
+
|
1470
|
+
static void set_fittype(gsl_multifit_function_fdf *f, const char *fittype, size_t *p, gsl_vector **v, int *flag)
|
1471
|
+
{
|
1472
|
+
if (str_tail_grep(fittype, "aussian_2peaks") == 0) {
|
1473
|
+
f->f = Gaussian_2peaks_f;
|
1474
|
+
f->df = Gaussian_2peaks_df;
|
1475
|
+
f->fdf = Gaussian_2peaks_fdf;
|
1476
|
+
*p = 7;
|
1477
|
+
if (*v == NULL) {
|
1478
|
+
*v = gsl_vector_alloc(*p);
|
1479
|
+
gsl_vector_set(*v, 0, 0); /* y0 = 0 */
|
1480
|
+
gsl_vector_set(*v, 1, 1); /* A = 1 */
|
1481
|
+
gsl_vector_set(*v, 2, 0.0); /* x0 = 0 */
|
1482
|
+
gsl_vector_set(*v, 3, 1); /* initial values, var = 1 */
|
1483
|
+
gsl_vector_set(*v, 4, 1); /* A = 1 */
|
1484
|
+
gsl_vector_set(*v, 5, 1.0); /* x0 = 1 */
|
1485
|
+
gsl_vector_set(*v, 6, 1); /* initial values, var = 1 */
|
1486
|
+
*flag = 1;
|
1487
|
+
}
|
1488
|
+
} else if (str_head_grep(fittype, "gaus") == 0) {
|
1489
|
+
f->f = Gaussian_f;
|
1490
|
+
f->df = Gaussian_df;
|
1491
|
+
f->fdf = Gaussian_fdf;
|
1492
|
+
*p = 4;
|
1493
|
+
if (*v == NULL) {
|
1494
|
+
*v = gsl_vector_alloc(*p);
|
1495
|
+
gsl_vector_set(*v, 3, 1); /* initial values, var = 1 */
|
1496
|
+
gsl_vector_set(*v, 2, 0.0); /* x0 = 0 */
|
1497
|
+
gsl_vector_set(*v, 1, 1); /* A = 1 */
|
1498
|
+
gsl_vector_set(*v, 0, 0); /* y0 = 0 */
|
1499
|
+
*flag = 1;
|
1500
|
+
}
|
1501
|
+
} else if (str_head_grep(fittype, "exp") == 0) {
|
1502
|
+
f->f = Exponential_f;
|
1503
|
+
f->df = Exponential_df;
|
1504
|
+
f->fdf = Exponential_fdf;
|
1505
|
+
*p = 3;
|
1506
|
+
if (*v == NULL) {
|
1507
|
+
*v = gsl_vector_alloc(*p);
|
1508
|
+
gsl_vector_set(*v, 0, 0); /* y0 = 0 */
|
1509
|
+
gsl_vector_set(*v, 1, 1); /* A = 1 */
|
1510
|
+
gsl_vector_set(*v, 2, 1);
|
1511
|
+
*flag = 1;
|
1512
|
+
}
|
1513
|
+
} else if (str_head_grep(fittype, "rayleigh") == 0) {
|
1514
|
+
f->f = Rayleigh_f;
|
1515
|
+
f->df = Rayleigh_df;
|
1516
|
+
f->fdf = Rayleigh_fdf;
|
1517
|
+
*p = 2;
|
1518
|
+
if (*v == NULL) {
|
1519
|
+
*v = gsl_vector_alloc(*p);
|
1520
|
+
gsl_vector_set(*v, 0, 1); /* A = 1 */
|
1521
|
+
gsl_vector_set(*v, 1, 1); /* sigma = 1 */
|
1522
|
+
*flag = 1;
|
1523
|
+
}
|
1524
|
+
} else if (str_head_grep(fittype, "dblexp") == 0) {
|
1525
|
+
f->f = DblExponential_f;
|
1526
|
+
f->df = DblExponential_df;
|
1527
|
+
f->fdf = DblExponential_fdf;
|
1528
|
+
*p = 5;
|
1529
|
+
if (*v == NULL) {
|
1530
|
+
*v = gsl_vector_alloc(*p);
|
1531
|
+
gsl_vector_set(*v, 0, 0); /* y0 = 0 */
|
1532
|
+
gsl_vector_set(*v, 1, 1); /* A = 1 */
|
1533
|
+
gsl_vector_set(*v, 2, 1);
|
1534
|
+
gsl_vector_set(*v, 3, 1); /* A = 1 */
|
1535
|
+
gsl_vector_set(*v, 4, 1);
|
1536
|
+
*flag = 1;
|
1537
|
+
}
|
1538
|
+
} else if (str_head_grep(fittype, "lor") == 0) {
|
1539
|
+
f->f = Lorentzian_f;
|
1540
|
+
f->df = Lorentzian_df;
|
1541
|
+
f->fdf = Lorentzian_fdf;
|
1542
|
+
*p = 4;
|
1543
|
+
if (*v == NULL) {
|
1544
|
+
*v = gsl_vector_alloc(*p);
|
1545
|
+
gsl_vector_set(*v, 0, 0);
|
1546
|
+
gsl_vector_set(*v, 1, 1);
|
1547
|
+
gsl_vector_set(*v, 2, 0);
|
1548
|
+
gsl_vector_set(*v, 3, 1);
|
1549
|
+
*flag = 1;
|
1550
|
+
}
|
1551
|
+
} else if (str_head_grep(fittype, "sin") == 0) {
|
1552
|
+
f->f = Sin_f;
|
1553
|
+
f->df = Sin_df;
|
1554
|
+
f->fdf = Sin_fdf;
|
1555
|
+
*p = 4;
|
1556
|
+
if (*v == NULL) {
|
1557
|
+
*v = gsl_vector_alloc(*p);
|
1558
|
+
gsl_vector_set(*v, 0, 0);
|
1559
|
+
gsl_vector_set(*v, 1, 1);
|
1560
|
+
gsl_vector_set(*v, 2, 1);
|
1561
|
+
gsl_vector_set(*v, 3, 0);
|
1562
|
+
*flag = 1;
|
1563
|
+
}
|
1564
|
+
} else if (str_head_grep(fittype, "hill") == 0) {
|
1565
|
+
f->f = Hill_f;
|
1566
|
+
f->df = Hill_df;
|
1567
|
+
f->fdf = Hill_fdf;
|
1568
|
+
*p = 4;
|
1569
|
+
if (*v == NULL) {
|
1570
|
+
*v = gsl_vector_alloc(*p);
|
1571
|
+
gsl_vector_set(*v, 0, 0);
|
1572
|
+
gsl_vector_set(*v, 1, 1);
|
1573
|
+
gsl_vector_set(*v, 2, 1);
|
1574
|
+
gsl_vector_set(*v, 3, 1);
|
1575
|
+
*flag = 1;
|
1576
|
+
}
|
1577
|
+
} else if (str_head_grep(fittype, "sigmoid") == 0 || str_head_grep(fittype, "fermi") == 0) {
|
1578
|
+
f->f = Sigmoid_f;
|
1579
|
+
f->df = Sigmoid_df;
|
1580
|
+
f->fdf = Sigmoid_fdf;
|
1581
|
+
*p = 4;
|
1582
|
+
if (*v == NULL) {
|
1583
|
+
*v = gsl_vector_alloc(*p);
|
1584
|
+
gsl_vector_set(*v, 0, 0);
|
1585
|
+
gsl_vector_set(*v, 1, 1);
|
1586
|
+
gsl_vector_set(*v, 2, 0);
|
1587
|
+
gsl_vector_set(*v, 3, 1);
|
1588
|
+
*flag = 1;
|
1589
|
+
}
|
1590
|
+
} else if (str_head_grep(fittype, "power") == 0) {
|
1591
|
+
f->f = Power_f;
|
1592
|
+
f->df = Power_df;
|
1593
|
+
f->fdf = Power_fdf;
|
1594
|
+
*p = 3;
|
1595
|
+
if (*v == NULL) {
|
1596
|
+
*v = gsl_vector_alloc(*p);
|
1597
|
+
gsl_vector_set(*v, 0, 0);
|
1598
|
+
gsl_vector_set(*v, 1, 1);
|
1599
|
+
gsl_vector_set(*v, 2, -1);
|
1600
|
+
*flag = 1;
|
1601
|
+
}
|
1602
|
+
} else if (str_head_grep(fittype, "lognormal") == 0) {
|
1603
|
+
f->f = Lognormal_f;
|
1604
|
+
f->df = Lognormal_df;
|
1605
|
+
f->fdf = Lognormal_fdf;
|
1606
|
+
*p = 4;
|
1607
|
+
if (*v == NULL) {
|
1608
|
+
*v = gsl_vector_alloc(*p);
|
1609
|
+
gsl_vector_set(*v, 0, 0);
|
1610
|
+
gsl_vector_set(*v, 1, 1);
|
1611
|
+
gsl_vector_set(*v, 2, 1);
|
1612
|
+
gsl_vector_set(*v, 3, 1);
|
1613
|
+
*flag = 1;
|
1614
|
+
}
|
1615
|
+
} else {
|
1616
|
+
rb_raise(rb_eRuntimeError, "Unknown fit type (gaussian expected)");
|
1617
|
+
}
|
1618
|
+
|
1619
|
+
}
|
1620
|
+
|
1621
|
+
/* Singleton method */
|
1622
|
+
static VALUE rb_gsl_multifit_fit(int argc, VALUE *argv, VALUE klass)
|
1623
|
+
{
|
1624
|
+
const gsl_multifit_fdfsolver_type *T;
|
1625
|
+
gsl_multifit_fdfsolver *solver;
|
1626
|
+
int status;
|
1627
|
+
size_t iter = 0, i;
|
1628
|
+
size_t n, dof; /* # of data points */
|
1629
|
+
size_t p; /* # of fitting parameters */
|
1630
|
+
gsl_multifit_function_fdf f;
|
1631
|
+
gsl_matrix *covar = NULL;
|
1632
|
+
gsl_vector *v = NULL;
|
1633
|
+
gsl_vector *x, *y, *w = NULL;
|
1634
|
+
gsl_vector_view xx, yy, ww;
|
1635
|
+
gsl_vector *vout, *verr;
|
1636
|
+
int flag = 0;
|
1637
|
+
double chi2;
|
1638
|
+
char fittype[256];
|
1639
|
+
struct fitting_xydata xydata;
|
1640
|
+
if (argc < 3) rb_raise(rb_eArgError, "too few arguments");
|
1641
|
+
switch (TYPE(argv[argc-1])) {
|
1642
|
+
case T_ARRAY:
|
1643
|
+
v = get_vector(argv[argc-1]);
|
1644
|
+
flag = 1;
|
1645
|
+
argc--;
|
1646
|
+
break;
|
1647
|
+
case T_STRING:
|
1648
|
+
/* do nothing */
|
1649
|
+
break;
|
1650
|
+
default:
|
1651
|
+
Data_Get_Vector(argv[argc-1], v);
|
1652
|
+
flag = 0;
|
1653
|
+
argc--;
|
1654
|
+
break;
|
1655
|
+
}
|
1656
|
+
x = &xx.vector;
|
1657
|
+
y = &yy.vector;
|
1658
|
+
w = &ww.vector;
|
1659
|
+
switch (argc) {
|
1660
|
+
case 3:
|
1661
|
+
Data_Get_Vector(argv[0], x);
|
1662
|
+
Data_Get_Vector(argv[1], y);
|
1663
|
+
w = NULL;
|
1664
|
+
strcpy(fittype, STR2CSTR(argv[2]));
|
1665
|
+
break;
|
1666
|
+
case 4:
|
1667
|
+
Data_Get_Vector(argv[0], x);
|
1668
|
+
Data_Get_Vector(argv[1], w);
|
1669
|
+
Data_Get_Vector(argv[2], y);
|
1670
|
+
strcpy(fittype, STR2CSTR(argv[3]));
|
1671
|
+
break;
|
1672
|
+
default:
|
1673
|
+
rb_raise(rb_eArgError, "wrong number of arguments");
|
1674
|
+
break;
|
1675
|
+
}
|
1676
|
+
|
1677
|
+
xydata.x = x;
|
1678
|
+
xydata.y = y;
|
1679
|
+
xydata.w = w;
|
1680
|
+
n = x->size;
|
1681
|
+
|
1682
|
+
set_fittype(&f, fittype, &p, &v, &flag);
|
1683
|
+
|
1684
|
+
f.n = n;
|
1685
|
+
f.p = p;
|
1686
|
+
f.params = &xydata;
|
1687
|
+
|
1688
|
+
T = gsl_multifit_fdfsolver_lmsder;
|
1689
|
+
solver = gsl_multifit_fdfsolver_alloc(T, n, p);
|
1690
|
+
gsl_multifit_fdfsolver_set(solver, &f, v);
|
1691
|
+
|
1692
|
+
do {
|
1693
|
+
iter++;
|
1694
|
+
status = gsl_multifit_fdfsolver_iterate(solver);
|
1695
|
+
if (status) break;
|
1696
|
+
status = gsl_multifit_test_delta(solver->dx, solver->x, 1e-6, 1e-6);
|
1697
|
+
} while (status == GSL_CONTINUE);
|
1698
|
+
vout = gsl_vector_alloc(p);
|
1699
|
+
verr = gsl_vector_alloc(p);
|
1700
|
+
gsl_vector_memcpy(vout, solver->x);
|
1701
|
+
covar = gsl_matrix_alloc(p, p);
|
1702
|
+
chi2 = gsl_pow_2(gsl_blas_dnrm2(solver->f)); /* not reduced chi-square */
|
1703
|
+
dof = n - p;
|
1704
|
+
gsl_multifit_covar(solver->J, 0.0, covar);
|
1705
|
+
for (i = 0; i < p; i++)
|
1706
|
+
gsl_vector_set(verr, i, sqrt(chi2/dof*gsl_matrix_get(covar, i, i)));
|
1707
|
+
gsl_matrix_free(covar);
|
1708
|
+
if (flag == 1) gsl_vector_free(v);
|
1709
|
+
gsl_multifit_fdfsolver_free(solver);
|
1710
|
+
return rb_ary_new3(4,
|
1711
|
+
Data_Wrap_Struct(cgsl_vector, 0, gsl_vector_free, vout),
|
1712
|
+
Data_Wrap_Struct(cgsl_vector, 0, gsl_vector_free, verr),
|
1713
|
+
rb_float_new(chi2), INT2FIX(dof));
|
1714
|
+
}
|
1715
|
+
|
1716
|
+
#ifdef GSL_1_8_LATER
|
1717
|
+
static VALUE rb_gsl_multifit_linear_est(VALUE module, VALUE xx, VALUE cc, VALUE ccov)
|
1718
|
+
{
|
1719
|
+
gsl_vector *x, *c;
|
1720
|
+
gsl_matrix *cov;
|
1721
|
+
double y, y_err;
|
1722
|
+
|
1723
|
+
Data_Get_Vector(xx, x);
|
1724
|
+
Data_Get_Vector(cc, c);
|
1725
|
+
Data_Get_Matrix(ccov, cov);
|
1726
|
+
gsl_multifit_linear_est(x, c, cov, &y, &y_err);
|
1727
|
+
return rb_ary_new3(2, rb_float_new(y), rb_float_new(y_err));
|
1728
|
+
}
|
1729
|
+
#endif
|
1730
|
+
#ifdef GSL_1_11_LATER
|
1731
|
+
static VALUE rb_gsl_multifit_linear_residuals(int argc, VALUE argv[], VALUE module)
|
1732
|
+
{
|
1733
|
+
gsl_vector *y, *c, *r;
|
1734
|
+
gsl_matrix *X;
|
1735
|
+
VALUE ret;
|
1736
|
+
switch (argc) {
|
1737
|
+
case 3:
|
1738
|
+
Data_Get_Matrix(argv[0], X);
|
1739
|
+
Data_Get_Vector(argv[1], y);
|
1740
|
+
Data_Get_Vector(argv[2], c);
|
1741
|
+
r = gsl_vector_alloc(y->size);
|
1742
|
+
ret = Data_Wrap_Struct(cgsl_vector, 0, gsl_vector_free, r);
|
1743
|
+
break;
|
1744
|
+
case 4:
|
1745
|
+
Data_Get_Matrix(argv[0], X);
|
1746
|
+
Data_Get_Vector(argv[1], y);
|
1747
|
+
Data_Get_Vector(argv[2], c);
|
1748
|
+
Data_Get_Vector(argv[3], r);
|
1749
|
+
ret = argv[3];
|
1750
|
+
break;
|
1751
|
+
default:
|
1752
|
+
rb_raise(rb_eArgError, "Wrong number of arguments %d (3 or 4).\n", argc);
|
1753
|
+
}
|
1754
|
+
gsl_multifit_linear_residuals(X, y, c, r);
|
1755
|
+
return ret;
|
1756
|
+
}
|
1757
|
+
|
1758
|
+
#endif
|
1759
|
+
|
1760
|
+
void Init_gsl_multifit(VALUE module)
|
1761
|
+
{
|
1762
|
+
VALUE mgsl_multifit;
|
1763
|
+
VALUE cgsl_multifit_fdfsolver;
|
1764
|
+
VALUE cgsl_multifit_solver;
|
1765
|
+
|
1766
|
+
mgsl_multifit = rb_define_module_under(module, "MultiFit");
|
1767
|
+
|
1768
|
+
cgsl_multifit_workspace = rb_define_class_under(mgsl_multifit, "Workspace",
|
1769
|
+
cGSL_Object);
|
1770
|
+
rb_define_singleton_method(cgsl_multifit_workspace, "new",
|
1771
|
+
rb_gsl_multifit_workspace_new, 2);
|
1772
|
+
rb_define_singleton_method(cgsl_multifit_workspace, "alloc",
|
1773
|
+
rb_gsl_multifit_workspace_new, 2);
|
1774
|
+
rb_define_singleton_method(mgsl_multifit, "alloc",
|
1775
|
+
rb_gsl_multifit_workspace_new, 2);
|
1776
|
+
rb_define_module_function(mgsl_multifit, "linear", rb_gsl_multifit_linear, -1);
|
1777
|
+
rb_define_module_function(mgsl_multifit, "wlinear", rb_gsl_multifit_wlinear, -1);
|
1778
|
+
|
1779
|
+
cgsl_multifit_solver = rb_define_class_under(mgsl_multifit, "Solver", cGSL_Object);
|
1780
|
+
cgsl_multifit_fdfsolver = rb_define_class_under(mgsl_multifit, "FdfSolver",
|
1781
|
+
cgsl_multifit_solver);
|
1782
|
+
cgsl_multifit_function_fdf = rb_define_class_under(mgsl_multifit, "Function_fdf",
|
1783
|
+
cGSL_Object);
|
1784
|
+
|
1785
|
+
/*****/
|
1786
|
+
|
1787
|
+
rb_define_singleton_method(cgsl_multifit_fdfsolver, "new",
|
1788
|
+
rb_gsl_multifit_fdfsolver_new, -1);
|
1789
|
+
rb_define_singleton_method(cgsl_multifit_fdfsolver, "alloc",
|
1790
|
+
rb_gsl_multifit_fdfsolver_new, -1);
|
1791
|
+
|
1792
|
+
rb_define_singleton_method(cgsl_multifit_function_fdf, "new",
|
1793
|
+
rb_gsl_multifit_function_fdf_new, -1);
|
1794
|
+
rb_define_singleton_method(cgsl_multifit_function_fdf, "alloc",
|
1795
|
+
rb_gsl_multifit_function_fdf_new, -1);
|
1796
|
+
|
1797
|
+
/*****/
|
1798
|
+
|
1799
|
+
rb_define_method(cgsl_multifit_fdfsolver, "set", rb_gsl_multifit_fdfsolver_set, 2);
|
1800
|
+
rb_define_method(cgsl_multifit_fdfsolver, "name", rb_gsl_multifit_fdfsolver_name, 0);
|
1801
|
+
rb_define_method(cgsl_multifit_fdfsolver, "iterate", rb_gsl_multifit_fdfsolver_iterate, 0);
|
1802
|
+
rb_define_method(cgsl_multifit_fdfsolver, "position", rb_gsl_multifit_fdfsolver_position, 0);
|
1803
|
+
// rb_define_alias(cgsl_multifit_fdfsolver, "x", "position");
|
1804
|
+
rb_define_method(cgsl_multifit_fdfsolver, "print_state", rb_gsl_multifit_fdfsolver_print_state, 1);
|
1805
|
+
rb_define_method(cgsl_multifit_fdfsolver, "fdf", rb_gsl_multifit_fdfsolver_fdf, 0);
|
1806
|
+
rb_define_method(cgsl_multifit_fdfsolver, "test_delta", rb_gsl_multifit_fdfsolver_test_delta, 2);
|
1807
|
+
rb_define_method(cgsl_multifit_fdfsolver, "test_gradient", rb_gsl_multifit_fdfsolver_test_gradient, -1);
|
1808
|
+
rb_define_method(cgsl_multifit_fdfsolver, "covar", rb_gsl_multifit_fdfsolver_covar, -1);
|
1809
|
+
rb_define_method(cgsl_multifit_fdfsolver, "gradient", rb_gsl_multifit_fdfsolver_gradient, -1);
|
1810
|
+
rb_define_method(cgsl_multifit_fdfsolver, "x", rb_gsl_multifit_fdfsolver_x, 0);
|
1811
|
+
rb_define_method(cgsl_multifit_fdfsolver, "dx", rb_gsl_multifit_fdfsolver_dx, 0);
|
1812
|
+
rb_define_method(cgsl_multifit_fdfsolver, "f", rb_gsl_multifit_fdfsolver_f, 0);
|
1813
|
+
rb_define_method(cgsl_multifit_fdfsolver, "J", rb_gsl_multifit_fdfsolver_J, 0);
|
1814
|
+
rb_define_alias(cgsl_multifit_fdfsolver, "jac", "J");
|
1815
|
+
rb_define_alias(cgsl_multifit_fdfsolver, "jacobian", "J");
|
1816
|
+
rb_define_alias(cgsl_multifit_fdfsolver, "Jacobian", "J");
|
1817
|
+
|
1818
|
+
/*****/
|
1819
|
+
rb_define_module_function(mgsl_multifit, "polyfit", rb_gsl_multifit_polyfit, -1);
|
1820
|
+
rb_define_module_function(mgsl_multifit, "legfit", rb_gsl_multifit_legfit, -1);
|
1821
|
+
/*****/
|
1822
|
+
|
1823
|
+
rb_define_singleton_method(mgsl_multifit, "test_delta", rb_gsl_multifit_test_delta, 4);
|
1824
|
+
rb_define_singleton_method(mgsl_multifit, "test_gradient", rb_gsl_multifit_test_gradient, 2);
|
1825
|
+
rb_define_singleton_method(mgsl_multifit, "gradient", rb_gsl_multifit_gradient, -1);
|
1826
|
+
rb_define_singleton_method(mgsl_multifit, "covar", rb_gsl_multifit_covar, -1);
|
1827
|
+
|
1828
|
+
rb_gsl_multifit_define_const(cgsl_multifit_fdfsolver);
|
1829
|
+
|
1830
|
+
rb_define_method(cgsl_multifit_function_fdf, "set_procs",
|
1831
|
+
rb_gsl_multifit_function_fdf_set_procs, -1);
|
1832
|
+
rb_define_method(cgsl_multifit_function_fdf, "set_data",
|
1833
|
+
rb_gsl_multifit_function_fdf_set_data, -1);
|
1834
|
+
rb_define_method(cgsl_multifit_function_fdf, "params",
|
1835
|
+
rb_gsl_multifit_function_fdf_params, 0);
|
1836
|
+
rb_define_alias(cgsl_multifit_function_fdf, "param", "params");
|
1837
|
+
|
1838
|
+
rb_define_method(cgsl_multifit_function_fdf, "n",
|
1839
|
+
rb_gsl_multifit_function_fdf_n, 0);
|
1840
|
+
rb_define_method(cgsl_multifit_function_fdf, "set_n",
|
1841
|
+
rb_gsl_multifit_function_fdf_set_n, 1);
|
1842
|
+
rb_define_alias(cgsl_multifit_function_fdf, "n=", "set_n");
|
1843
|
+
rb_define_method(cgsl_multifit_function_fdf, "p",
|
1844
|
+
rb_gsl_multifit_function_fdf_p, 0);
|
1845
|
+
rb_define_alias(cgsl_multifit_function_fdf, "np", "p");
|
1846
|
+
|
1847
|
+
/*****/
|
1848
|
+
rb_define_singleton_method(cgsl_multifit_fdfsolver, "fit", rb_gsl_multifit_fit, -1);
|
1849
|
+
|
1850
|
+
/***/
|
1851
|
+
#ifdef GSL_1_8_LATER
|
1852
|
+
rb_define_module_function(mgsl_multifit, "linear_est", rb_gsl_multifit_linear_est, 3);
|
1853
|
+
rb_define_module_function(module, "multifit_linear_est", rb_gsl_multifit_linear_est, 3);
|
1854
|
+
#endif
|
1855
|
+
#ifdef GSL_1_11_LATER
|
1856
|
+
rb_define_module_function(mgsl_multifit, "linear_residuals", rb_gsl_multifit_linear_residuals, -1);
|
1857
|
+
rb_define_module_function(module, "multifit_linear_residuals", rb_gsl_multifit_linear_residuals, -1);
|
1858
|
+
#endif
|
1859
|
+
|
1860
|
+
#ifdef HAVE_NDLINEAR_GSL_MULTIFIT_NDLINEAR_H
|
1861
|
+
Init_ndlinear(mgsl_multifit);
|
1862
|
+
#endif
|
1863
|
+
|
1864
|
+
}
|
1865
|
+
|
1866
|
+
#ifdef CHECK_WORKSPACE
|
1867
|
+
#undef CHECK_WORKSPACE
|
1868
|
+
#endif
|
1869
|
+
#ifdef CHECK_MULTIFIT_FUNCTION_FDF
|
1870
|
+
#undef CHECK_MULTIFIT_FUNCTION_FDF
|
1871
|
+
#endif
|