quorum 0.2.1 → 0.3.0
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- data/Gemfile.lock +35 -28
- data/HISTORY.md +4 -0
- data/app/assets/javascripts/quorum/application.js +1 -0
- data/app/assets/javascripts/quorum/jobs.js +5 -345
- data/app/assets/javascripts/quorum/quorum.js +275 -0
- data/app/assets/javascripts/quorum/template_settings.js +8 -0
- data/app/assets/javascripts/quorum/utilities.js +12 -0
- data/app/assets/stylesheets/quorum/application.css +0 -4
- data/app/assets/stylesheets/quorum/autohint.css +4 -0
- data/app/controllers/quorum/jobs_controller.rb +9 -9
- data/app/views/quorum/jobs/form/_blastn_form.html.erb +62 -62
- data/app/views/quorum/jobs/form/_blastp_form.html.erb +62 -62
- data/app/views/quorum/jobs/form/_blastx_form.html.erb +62 -62
- data/app/views/quorum/jobs/form/_tblastn_form.html.erb +62 -62
- data/app/views/quorum/jobs/show.html.erb +1 -1
- data/app/views/quorum/jobs/templates/_blast_detailed_report_template.html.erb +22 -22
- data/app/views/quorum/jobs/templates/_blast_template.html.erb +29 -29
- data/app/views/shared/_error_messages.html.erb +8 -8
- data/lib/quorum/version.rb +1 -1
- data/lib/tasks/jasmine.rake +8 -0
- data/quorum.gemspec +1 -0
- data/spec/data/seqs_not_fa.txt +16 -16
- data/spec/javascripts/fixtures/formatted_sequence.html +6 -0
- data/spec/javascripts/fixtures/quorum_search_form.html +461 -0
- data/spec/javascripts/fixtures/quorum_tabs.html +10 -0
- data/spec/javascripts/helpers/jasmine-jquery.js +288 -0
- data/spec/javascripts/jobs_spec.js +99 -0
- data/spec/javascripts/jquery/jquery-ui.min.js +791 -0
- data/spec/javascripts/jquery/jquery.min.js +4 -0
- data/spec/javascripts/jquery/jquery_ujs.js +373 -0
- data/spec/javascripts/quorum_spec.js +106 -0
- data/spec/javascripts/string_spec.js +18 -0
- data/spec/javascripts/support/jasmine.yml +84 -0
- data/spec/javascripts/support/jasmine_config.rb +23 -0
- data/spec/javascripts/support/jasmine_runner.rb +33 -0
- data/spec/requests/jobs_spec.rb +34 -33
- data/vendor/assets/javascripts/jquery.autohint.js +87 -0
- metadata +62 -26
metadata
CHANGED
@@ -1,7 +1,7 @@
|
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1
1
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--- !ruby/object:Gem::Specification
|
2
2
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name: quorum
|
3
3
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version: !ruby/object:Gem::Version
|
4
|
-
version: 0.
|
4
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+
version: 0.3.0
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5
5
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prerelease:
|
6
6
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platform: ruby
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7
7
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authors:
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@@ -9,11 +9,11 @@ authors:
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9
9
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autorequire:
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10
10
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bindir: bin
|
11
11
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cert_chain: []
|
12
|
-
date: 2012-01-
|
12
|
+
date: 2012-01-31 00:00:00.000000000Z
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13
13
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dependencies:
|
14
14
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- !ruby/object:Gem::Dependency
|
15
15
|
name: rails
|
16
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-
requirement: &
|
16
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+
requirement: &16508360 !ruby/object:Gem::Requirement
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none: false
|
18
18
|
requirements:
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19
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- - ~>
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@@ -21,10 +21,10 @@ dependencies:
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21
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version: '3.1'
|
22
22
|
type: :runtime
|
23
23
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prerelease: false
|
24
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-
version_requirements: *
|
24
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+
version_requirements: *16508360
|
25
25
|
- !ruby/object:Gem::Dependency
|
26
26
|
name: jquery-rails
|
27
|
-
requirement: &
|
27
|
+
requirement: &16507560 !ruby/object:Gem::Requirement
|
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|
none: false
|
29
29
|
requirements:
|
30
30
|
- - ! '>='
|
@@ -32,10 +32,10 @@ dependencies:
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32
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version: '0'
|
33
33
|
type: :runtime
|
34
34
|
prerelease: false
|
35
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-
version_requirements: *
|
35
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+
version_requirements: *16507560
|
36
36
|
- !ruby/object:Gem::Dependency
|
37
37
|
name: net-ssh
|
38
|
-
requirement: &
|
38
|
+
requirement: &16506660 !ruby/object:Gem::Requirement
|
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|
none: false
|
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requirements:
|
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41
|
- - ~>
|
@@ -43,10 +43,10 @@ dependencies:
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version: 2.3.0
|
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|
type: :runtime
|
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prerelease: false
|
46
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-
version_requirements: *
|
46
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+
version_requirements: *16506660
|
47
47
|
- !ruby/object:Gem::Dependency
|
48
48
|
name: resque
|
49
|
-
requirement: &
|
49
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+
requirement: &16506000 !ruby/object:Gem::Requirement
|
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|
none: false
|
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|
requirements:
|
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|
- - ~>
|
@@ -54,10 +54,10 @@ dependencies:
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|
54
54
|
version: 1.19.0
|
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|
type: :runtime
|
56
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|
prerelease: false
|
57
|
-
version_requirements: *
|
57
|
+
version_requirements: *16506000
|
58
58
|
- !ruby/object:Gem::Dependency
|
59
59
|
name: resque-result
|
60
|
-
requirement: &
|
60
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+
requirement: &16505320 !ruby/object:Gem::Requirement
|
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|
none: false
|
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requirements:
|
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- - ~>
|
@@ -65,10 +65,10 @@ dependencies:
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version: 1.0.1
|
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type: :runtime
|
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prerelease: false
|
68
|
-
version_requirements: *
|
68
|
+
version_requirements: *16505320
|
69
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|
- !ruby/object:Gem::Dependency
|
70
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|
name: bio-blastxmlparser
|
71
|
-
requirement: &
|
71
|
+
requirement: &16504660 !ruby/object:Gem::Requirement
|
72
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|
none: false
|
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|
requirements:
|
74
74
|
- - ~>
|
@@ -76,10 +76,10 @@ dependencies:
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|
76
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version: 1.0.1
|
77
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|
type: :runtime
|
78
78
|
prerelease: false
|
79
|
-
version_requirements: *
|
79
|
+
version_requirements: *16504660
|
80
80
|
- !ruby/object:Gem::Dependency
|
81
81
|
name: mysql2
|
82
|
-
requirement: &
|
82
|
+
requirement: &16500480 !ruby/object:Gem::Requirement
|
83
83
|
none: false
|
84
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|
requirements:
|
85
85
|
- - ~>
|
@@ -87,10 +87,10 @@ dependencies:
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|
87
87
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version: 0.3.11
|
88
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type: :development
|
89
89
|
prerelease: false
|
90
|
-
version_requirements: *
|
90
|
+
version_requirements: *16500480
|
91
91
|
- !ruby/object:Gem::Dependency
|
92
92
|
name: rspec-rails
|
93
|
-
requirement: &
|
93
|
+
requirement: &16499900 !ruby/object:Gem::Requirement
|
94
94
|
none: false
|
95
95
|
requirements:
|
96
96
|
- - ~>
|
@@ -98,10 +98,10 @@ dependencies:
|
|
98
98
|
version: '2.6'
|
99
99
|
type: :development
|
100
100
|
prerelease: false
|
101
|
-
version_requirements: *
|
101
|
+
version_requirements: *16499900
|
102
102
|
- !ruby/object:Gem::Dependency
|
103
103
|
name: resque_spec
|
104
|
-
requirement: &
|
104
|
+
requirement: &16499360 !ruby/object:Gem::Requirement
|
105
105
|
none: false
|
106
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|
requirements:
|
107
107
|
- - ~>
|
@@ -109,10 +109,10 @@ dependencies:
|
|
109
109
|
version: '0.8'
|
110
110
|
type: :development
|
111
111
|
prerelease: false
|
112
|
-
version_requirements: *
|
112
|
+
version_requirements: *16499360
|
113
113
|
- !ruby/object:Gem::Dependency
|
114
114
|
name: capybara
|
115
|
-
requirement: &
|
115
|
+
requirement: &16498840 !ruby/object:Gem::Requirement
|
116
116
|
none: false
|
117
117
|
requirements:
|
118
118
|
- - ~>
|
@@ -120,10 +120,10 @@ dependencies:
|
|
120
120
|
version: '1.1'
|
121
121
|
type: :development
|
122
122
|
prerelease: false
|
123
|
-
version_requirements: *
|
123
|
+
version_requirements: *16498840
|
124
124
|
- !ruby/object:Gem::Dependency
|
125
125
|
name: database_cleaner
|
126
|
-
requirement: &
|
126
|
+
requirement: &16498280 !ruby/object:Gem::Requirement
|
127
127
|
none: false
|
128
128
|
requirements:
|
129
129
|
- - ~>
|
@@ -131,10 +131,10 @@ dependencies:
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|
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version: '0.6'
|
132
132
|
type: :development
|
133
133
|
prerelease: false
|
134
|
-
version_requirements: *
|
134
|
+
version_requirements: *16498280
|
135
135
|
- !ruby/object:Gem::Dependency
|
136
136
|
name: factory_girl_rails
|
137
|
-
requirement: &
|
137
|
+
requirement: &16497740 !ruby/object:Gem::Requirement
|
138
138
|
none: false
|
139
139
|
requirements:
|
140
140
|
- - ~>
|
@@ -142,7 +142,18 @@ dependencies:
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|
142
142
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version: '1.2'
|
143
143
|
type: :development
|
144
144
|
prerelease: false
|
145
|
-
version_requirements: *
|
145
|
+
version_requirements: *16497740
|
146
|
+
- !ruby/object:Gem::Dependency
|
147
|
+
name: jasmine
|
148
|
+
requirement: &16497200 !ruby/object:Gem::Requirement
|
149
|
+
none: false
|
150
|
+
requirements:
|
151
|
+
- - ~>
|
152
|
+
- !ruby/object:Gem::Version
|
153
|
+
version: '1.1'
|
154
|
+
type: :development
|
155
|
+
prerelease: false
|
156
|
+
version_requirements: *16497200
|
146
157
|
description: Flexible bioinformatics search tool.
|
147
158
|
email:
|
148
159
|
- kas@ncgr.org
|
@@ -176,7 +187,11 @@ files:
|
|
176
187
|
- app/assets/images/quorum/ui-icons_cd0a0a_256x240.png
|
177
188
|
- app/assets/javascripts/quorum/application.js
|
178
189
|
- app/assets/javascripts/quorum/jobs.js
|
190
|
+
- app/assets/javascripts/quorum/quorum.js
|
191
|
+
- app/assets/javascripts/quorum/template_settings.js
|
192
|
+
- app/assets/javascripts/quorum/utilities.js
|
179
193
|
- app/assets/stylesheets/quorum/application.css
|
194
|
+
- app/assets/stylesheets/quorum/autohint.css
|
180
195
|
- app/assets/stylesheets/quorum/jobs.css
|
181
196
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- app/assets/stylesheets/quorum/jquery-ui-1.8.16.custom.css
|
182
197
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- app/assets/stylesheets/quorum/tipsy.css
|
@@ -234,6 +249,7 @@ files:
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|
234
249
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- lib/quorum/version.rb
|
235
250
|
- lib/tasks/blastdb/README
|
236
251
|
- lib/tasks/blastdb/build_blast_db.rb
|
252
|
+
- lib/tasks/jasmine.rake
|
237
253
|
- lib/tasks/quorum_resque.rake
|
238
254
|
- lib/tasks/quorum_tasks.rake
|
239
255
|
- lib/workers/quorum.rb
|
@@ -305,6 +321,19 @@ files:
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- spec/dummy/quorum/lib/search_tools/blast.rb
|
306
322
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- spec/dummy/quorum/lib/trollop.rb
|
307
323
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- spec/dummy/script/rails
|
324
|
+
- spec/javascripts/fixtures/formatted_sequence.html
|
325
|
+
- spec/javascripts/fixtures/quorum_search_form.html
|
326
|
+
- spec/javascripts/fixtures/quorum_tabs.html
|
327
|
+
- spec/javascripts/helpers/jasmine-jquery.js
|
328
|
+
- spec/javascripts/jobs_spec.js
|
329
|
+
- spec/javascripts/jquery/jquery-ui.min.js
|
330
|
+
- spec/javascripts/jquery/jquery.min.js
|
331
|
+
- spec/javascripts/jquery/jquery_ujs.js
|
332
|
+
- spec/javascripts/quorum_spec.js
|
333
|
+
- spec/javascripts/string_spec.js
|
334
|
+
- spec/javascripts/support/jasmine.yml
|
335
|
+
- spec/javascripts/support/jasmine_config.rb
|
336
|
+
- spec/javascripts/support/jasmine_runner.rb
|
308
337
|
- spec/models/blastn_job_report_spec.rb
|
309
338
|
- spec/models/blastn_job_spec.rb
|
310
339
|
- spec/models/blastp_job_report_spec.rb
|
@@ -323,6 +352,7 @@ files:
|
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323
352
|
- spec/templates/blast_db_spec.rb
|
324
353
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- spec/templates/blast_spec.rb
|
325
354
|
- spec/templates/logger_spec.rb
|
355
|
+
- vendor/assets/javascripts/jquery.autohint.js
|
326
356
|
- vendor/assets/javascripts/jquery.tipsy.js
|
327
357
|
- vendor/assets/javascripts/underscore-min.js
|
328
358
|
homepage: https://github.com/ncgr/quorum
|
@@ -337,12 +367,18 @@ required_ruby_version: !ruby/object:Gem::Requirement
|
|
337
367
|
- - ! '>='
|
338
368
|
- !ruby/object:Gem::Version
|
339
369
|
version: '0'
|
370
|
+
segments:
|
371
|
+
- 0
|
372
|
+
hash: 2758324715515745186
|
340
373
|
required_rubygems_version: !ruby/object:Gem::Requirement
|
341
374
|
none: false
|
342
375
|
requirements:
|
343
376
|
- - ! '>='
|
344
377
|
- !ruby/object:Gem::Version
|
345
378
|
version: '0'
|
379
|
+
segments:
|
380
|
+
- 0
|
381
|
+
hash: 2758324715515745186
|
346
382
|
requirements: []
|
347
383
|
rubyforge_project:
|
348
384
|
rubygems_version: 1.8.15
|