quorum 0.2.1 → 0.3.0
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- data/Gemfile.lock +35 -28
- data/HISTORY.md +4 -0
- data/app/assets/javascripts/quorum/application.js +1 -0
- data/app/assets/javascripts/quorum/jobs.js +5 -345
- data/app/assets/javascripts/quorum/quorum.js +275 -0
- data/app/assets/javascripts/quorum/template_settings.js +8 -0
- data/app/assets/javascripts/quorum/utilities.js +12 -0
- data/app/assets/stylesheets/quorum/application.css +0 -4
- data/app/assets/stylesheets/quorum/autohint.css +4 -0
- data/app/controllers/quorum/jobs_controller.rb +9 -9
- data/app/views/quorum/jobs/form/_blastn_form.html.erb +62 -62
- data/app/views/quorum/jobs/form/_blastp_form.html.erb +62 -62
- data/app/views/quorum/jobs/form/_blastx_form.html.erb +62 -62
- data/app/views/quorum/jobs/form/_tblastn_form.html.erb +62 -62
- data/app/views/quorum/jobs/show.html.erb +1 -1
- data/app/views/quorum/jobs/templates/_blast_detailed_report_template.html.erb +22 -22
- data/app/views/quorum/jobs/templates/_blast_template.html.erb +29 -29
- data/app/views/shared/_error_messages.html.erb +8 -8
- data/lib/quorum/version.rb +1 -1
- data/lib/tasks/jasmine.rake +8 -0
- data/quorum.gemspec +1 -0
- data/spec/data/seqs_not_fa.txt +16 -16
- data/spec/javascripts/fixtures/formatted_sequence.html +6 -0
- data/spec/javascripts/fixtures/quorum_search_form.html +461 -0
- data/spec/javascripts/fixtures/quorum_tabs.html +10 -0
- data/spec/javascripts/helpers/jasmine-jquery.js +288 -0
- data/spec/javascripts/jobs_spec.js +99 -0
- data/spec/javascripts/jquery/jquery-ui.min.js +791 -0
- data/spec/javascripts/jquery/jquery.min.js +4 -0
- data/spec/javascripts/jquery/jquery_ujs.js +373 -0
- data/spec/javascripts/quorum_spec.js +106 -0
- data/spec/javascripts/string_spec.js +18 -0
- data/spec/javascripts/support/jasmine.yml +84 -0
- data/spec/javascripts/support/jasmine_config.rb +23 -0
- data/spec/javascripts/support/jasmine_runner.rb +33 -0
- data/spec/requests/jobs_spec.rb +34 -33
- data/vendor/assets/javascripts/jquery.autohint.js +87 -0
- metadata +62 -26
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beforeEach(function() {
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this.addMatchers(jasmine.JQuery.matchersClass);
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this.addMatchers({
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toHaveBeenTriggeredOn: function(selector) {
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this.message = function() {
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"Expected event " + this.actual + " to have been triggered on" + selector,
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afterEach(function() {
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jasmine.JQuery.events.cleanUp();
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});
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//
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// Quorum Job Views
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//
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describe("Quorum Search Form", function() {
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beforeEach(function() {
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loadFixtures('quorum_search_form.html');
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});
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it("toggles algorithm queues on change", function() {
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spyOnEvent($("#job_blastn_job_attributes_queue"), 'change');
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spyOnEvent($("#job_blastx_job_attributes_queue"), 'change');
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spyOnEvent($("#job_tblastn_job_attributes_queue"), 'change');
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spyOnEvent($("#job_blastp_job_attributes_queue"), 'change');
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$('#job_blastn_job_attributes_queue').change();
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expect('change').toHaveBeenTriggeredOn($('#blastn'));
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$('#job_blastx_job_attributes_queue').change();
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expect('change').toHaveBeenTriggeredOn($('#blastx'));
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$('#job_tblastn_job_attributes_queue').change();
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expect('change').toHaveBeenTriggeredOn($('#tblastn'));
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$('#job_blastp_job_attributes_queue').change();
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expect('change').toHaveBeenTriggeredOn($('#blastp'));
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});
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it("resets form", function() {
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spyOnEvent($('#quorum_job_reset'), 'click');
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$('#quorum_job_reset').click();
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expect('click').toHaveBeenTriggeredOn($('textarea'));
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expect('click').toHaveBeenTriggeredOn($('input:text'));
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expect('click').toHaveBeenTriggeredOn($('input:file'));
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expect('click').toHaveBeenTriggeredOn($('input:checkbox'));
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expect('click').toHaveBeenTriggeredOn($('select'));
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});
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it("inserts form hints", function() {
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$('form :input.auto-hint').autoHint();
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expect($('#job_sequence')).toHaveValue($('#job_sequence').attr('title'));
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expect($('#job_blastn_job_attributes_expectation')).toHaveValue(
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$('#job_blastn_job_attributes_expectation').attr('title')
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);
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expect($('#job_blastx_job_attributes_expectation')).toHaveValue(
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$('#job_blastx_job_attributes_expectation').attr('title')
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);
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expect($('#job_tblastn_job_attributes_expectation')).toHaveValue(
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$('#job_tblastn_job_attributes_expectation').attr('title')
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);
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expect($('#job_blastp_job_attributes_expectation')).toHaveValue(
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$('#job_blastp_job_attributes_expectation').attr('title')
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);
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expect($('#job_blastn_job_attributes_min_bit_score')).toHaveValue(
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$('#job_blastn_job_attributes_min_bit_score').attr('title')
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);
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expect($('#job_blastx_job_attributes_min_bit_score')).toHaveValue(
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|
+
$('#job_blastx_job_attributes_min_bit_score').attr('title')
|
62
|
+
);
|
63
|
+
expect($('#job_tblastn_job_attributes_min_bit_score')).toHaveValue(
|
64
|
+
$('#job_tblastn_job_attributes_min_bit_score').attr('title')
|
65
|
+
);
|
66
|
+
expect($('#job_blastp_job_attributes_min_bit_score')).toHaveValue(
|
67
|
+
$('#job_blastp_job_attributes_min_bit_score').attr('title')
|
68
|
+
);
|
69
|
+
|
70
|
+
expect($('#job_blastn_job_attributes_max_score')).toHaveValue(
|
71
|
+
$('#job_blastn_job_attributes_max_score').attr('title')
|
72
|
+
);
|
73
|
+
expect($('#job_blastx_job_attributes_max_score')).toHaveValue(
|
74
|
+
$('#job_blastx_job_attributes_max_score').attr('title')
|
75
|
+
);
|
76
|
+
expect($('#job_tblastn_job_attributes_max_score')).toHaveValue(
|
77
|
+
$('#job_tblastn_job_attributes_max_score').attr('title')
|
78
|
+
);
|
79
|
+
expect($('#job_blastp_job_attributes_max_score')).toHaveValue(
|
80
|
+
$('#job_blastp_job_attributes_max_score').attr('title')
|
81
|
+
);
|
82
|
+
});
|
83
|
+
|
84
|
+
});
|
85
|
+
|
86
|
+
describe("Quorum Search Results", function() {
|
87
|
+
|
88
|
+
beforeEach(function() {
|
89
|
+
loadFixtures('quorum_tabs.html');
|
90
|
+
});
|
91
|
+
|
92
|
+
it("displays results in tabs", function() {
|
93
|
+
$('#tabs').tabs();
|
94
|
+
expect($('#tabs-1')).not.toHaveClass('ui-tabs-hide');
|
95
|
+
expect($('#tabs-2')).toHaveClass('ui-tabs-hide');
|
96
|
+
expect($('#tabs-3')).toHaveClass('ui-tabs-hide');
|
97
|
+
});
|
98
|
+
|
99
|
+
});
|