qu-pcr 1.0.4 → 1.0.5
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/qu/pcr/primer3_parameters.rb +7 -1
- data/lib/qu/pcr/version.rb +1 -1
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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---
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SHA1:
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-
metadata.gz:
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data.tar.gz:
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metadata.gz: b839403da7b40c9d64f37727ed806d342d60dee6
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4
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data.tar.gz: 92d8774dfe9545059d248cbab2c1fd912c080349
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SHA512:
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-
metadata.gz:
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data.tar.gz:
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metadata.gz: 75f2c276a539396876c0b1614a573e74c39d041feeae68283f13fd2f29ff1c0c2ca5d2a69a8c13e296f9aa47867194ee2e65feef25e7fe3a3f6bb5fea12d5b67
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7
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data.tar.gz: da6c34009a85abeffc7cbeaa410da504d2079d4b9645d4a45d84562cc35814b38d86bf791293c27a42335a49386baf4d5c824b4e95ac4216ccaeb65e7473dcc6
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@@ -26,6 +26,8 @@ module Qu
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PRIMER_MAX_HAIRPIN_TH: 47,
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PRIMER_MAX_SELF_ANY_TH: 47,
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PRIMER_MAX_SELF_END_TH: 47,
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PRIMER_PAIR_MAX_COMPL_ANY_TH: 47,
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PRIMER_PAIR_MAX_COMPL_END_TH: 47,
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SEQUENCE_TEMPLATE: "",
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PRIMER_THERMODYNAMIC_PARAMETERS_PATH: Cmdwrapper::THERMO_PATH,
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PRIMER_PICK_LEFT_PRIMER: 1,
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@@ -50,6 +52,7 @@ module Qu
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SEQUENCE_PRIMER_PAIR_OK_REGION_LIST: "",
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PRIMER_MIN_LEFT_THREE_PRIME_DISTANCE: 2,
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PRIMER_LOWERCASE_MASKING: 1,
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PRIMER_PRODUCT_OPT_TM: 0,
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}
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# Parameters not shown to users for editing
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@@ -77,6 +80,9 @@ module Qu
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:PRIMER_MAX_HAIRPIN_TH, # I think it's no needed here, becuse they should be checked in MFEprimer (>v3.0), Wubin Qu [2014-5-8]
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:PRIMER_MAX_SELF_ANY_TH,
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:PRIMER_MAX_SELF_END_TH,
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:PRIMER_PAIR_MAX_COMPL_ANY_TH,
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:PRIMER_PAIR_MAX_COMPL_END_TH,
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:PRIMER_PRODUCT_OPT_TM,
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]
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end
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-
end
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end
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data/lib/qu/pcr/version.rb
CHANGED
metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
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--- !ruby/object:Gem::Specification
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name: qu-pcr
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version: !ruby/object:Gem::Version
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version: 1.0.
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version: 1.0.5
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platform: ruby
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authors:
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- Wubin Qu
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2014-08-
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date: 2014-08-13 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: qu-utils
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