qu-pcr 1.0.4 → 1.0.5
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- checksums.yaml +4 -4
- data/lib/qu/pcr/primer3_parameters.rb +7 -1
- data/lib/qu/pcr/version.rb +1 -1
- metadata +2 -2
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: b839403da7b40c9d64f37727ed806d342d60dee6
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4
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+
data.tar.gz: 92d8774dfe9545059d248cbab2c1fd912c080349
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 75f2c276a539396876c0b1614a573e74c39d041feeae68283f13fd2f29ff1c0c2ca5d2a69a8c13e296f9aa47867194ee2e65feef25e7fe3a3f6bb5fea12d5b67
|
7
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+
data.tar.gz: da6c34009a85abeffc7cbeaa410da504d2079d4b9645d4a45d84562cc35814b38d86bf791293c27a42335a49386baf4d5c824b4e95ac4216ccaeb65e7473dcc6
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@@ -26,6 +26,8 @@ module Qu
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26
26
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PRIMER_MAX_HAIRPIN_TH: 47,
|
27
27
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PRIMER_MAX_SELF_ANY_TH: 47,
|
28
28
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PRIMER_MAX_SELF_END_TH: 47,
|
29
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+
PRIMER_PAIR_MAX_COMPL_ANY_TH: 47,
|
30
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+
PRIMER_PAIR_MAX_COMPL_END_TH: 47,
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29
31
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SEQUENCE_TEMPLATE: "",
|
30
32
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PRIMER_THERMODYNAMIC_PARAMETERS_PATH: Cmdwrapper::THERMO_PATH,
|
31
33
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PRIMER_PICK_LEFT_PRIMER: 1,
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@@ -50,6 +52,7 @@ module Qu
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|
50
52
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SEQUENCE_PRIMER_PAIR_OK_REGION_LIST: "",
|
51
53
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PRIMER_MIN_LEFT_THREE_PRIME_DISTANCE: 2,
|
52
54
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PRIMER_LOWERCASE_MASKING: 1,
|
55
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+
PRIMER_PRODUCT_OPT_TM: 0,
|
53
56
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}
|
54
57
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|
55
58
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# Parameters not shown to users for editing
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@@ -77,6 +80,9 @@ module Qu
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77
80
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:PRIMER_MAX_HAIRPIN_TH, # I think it's no needed here, becuse they should be checked in MFEprimer (>v3.0), Wubin Qu [2014-5-8]
|
78
81
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:PRIMER_MAX_SELF_ANY_TH,
|
79
82
|
:PRIMER_MAX_SELF_END_TH,
|
83
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+
:PRIMER_PAIR_MAX_COMPL_ANY_TH,
|
84
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+
:PRIMER_PAIR_MAX_COMPL_END_TH,
|
85
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+
:PRIMER_PRODUCT_OPT_TM,
|
80
86
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]
|
81
87
|
end
|
82
|
-
end
|
88
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+
end
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data/lib/qu/pcr/version.rb
CHANGED
metadata
CHANGED
@@ -1,14 +1,14 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: qu-pcr
|
3
3
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version: !ruby/object:Gem::Version
|
4
|
-
version: 1.0.
|
4
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+
version: 1.0.5
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5
5
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platform: ruby
|
6
6
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authors:
|
7
7
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- Wubin Qu
|
8
8
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autorequire:
|
9
9
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bindir: bin
|
10
10
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cert_chain: []
|
11
|
-
date: 2014-08-
|
11
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+
date: 2014-08-13 00:00:00.000000000 Z
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12
12
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dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: qu-utils
|