qu-pcr 1.0.4 → 1.0.5

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@@ -26,6 +26,8 @@ module Qu
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  PRIMER_MAX_HAIRPIN_TH: 47,
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  PRIMER_MAX_SELF_ANY_TH: 47,
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  PRIMER_MAX_SELF_END_TH: 47,
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+ PRIMER_PAIR_MAX_COMPL_ANY_TH: 47,
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+ PRIMER_PAIR_MAX_COMPL_END_TH: 47,
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  SEQUENCE_TEMPLATE: "",
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  PRIMER_THERMODYNAMIC_PARAMETERS_PATH: Cmdwrapper::THERMO_PATH,
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  PRIMER_PICK_LEFT_PRIMER: 1,
@@ -50,6 +52,7 @@ module Qu
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  SEQUENCE_PRIMER_PAIR_OK_REGION_LIST: "",
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  PRIMER_MIN_LEFT_THREE_PRIME_DISTANCE: 2,
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  PRIMER_LOWERCASE_MASKING: 1,
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+ PRIMER_PRODUCT_OPT_TM: 0,
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  }
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  # Parameters not shown to users for editing
@@ -77,6 +80,9 @@ module Qu
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  :PRIMER_MAX_HAIRPIN_TH, # I think it's no needed here, becuse they should be checked in MFEprimer (>v3.0), Wubin Qu [2014-5-8]
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  :PRIMER_MAX_SELF_ANY_TH,
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  :PRIMER_MAX_SELF_END_TH,
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+ :PRIMER_PAIR_MAX_COMPL_ANY_TH,
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+ :PRIMER_PAIR_MAX_COMPL_END_TH,
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+ :PRIMER_PRODUCT_OPT_TM,
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  ]
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  end
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- end
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+ end
@@ -1,5 +1,5 @@
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  module Qu
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  module Pcr
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- VERSION = "1.0.4"
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+ VERSION = "1.0.5"
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  end
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  end
metadata CHANGED
@@ -1,14 +1,14 @@
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  --- !ruby/object:Gem::Specification
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  name: qu-pcr
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  version: !ruby/object:Gem::Version
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- version: 1.0.4
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+ version: 1.0.5
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  platform: ruby
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  authors:
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  - Wubin Qu
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2014-08-10 00:00:00.000000000 Z
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+ date: 2014-08-13 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: qu-utils