qu-cmdwrapper 1.0.0
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- checksums.yaml +7 -0
- data/.gitignore +17 -0
- data/Gemfile +5 -0
- data/LICENSE.txt +22 -0
- data/README.md +32 -0
- data/Rakefile +1 -0
- data/lib/qu/cmdwrapper.rb +10 -0
- data/lib/qu/cmdwrapper/cmd.rb +109 -0
- data/lib/qu/cmdwrapper/ext_bin/linux/32/faToTwoBit +0 -0
- data/lib/qu/cmdwrapper/ext_bin/linux/32/ntdpal +0 -0
- data/lib/qu/cmdwrapper/ext_bin/linux/32/ntthal +0 -0
- data/lib/qu/cmdwrapper/ext_bin/linux/32/oligotm +0 -0
- data/lib/qu/cmdwrapper/ext_bin/linux/32/primer3_core +0 -0
- data/lib/qu/cmdwrapper/ext_bin/linux/32/twoBitToFa +0 -0
- data/lib/qu/cmdwrapper/ext_bin/linux/64/faToTwoBit +0 -0
- data/lib/qu/cmdwrapper/ext_bin/linux/64/ntdpal +0 -0
- data/lib/qu/cmdwrapper/ext_bin/linux/64/ntthal +0 -0
- data/lib/qu/cmdwrapper/ext_bin/linux/64/oligotm +0 -0
- data/lib/qu/cmdwrapper/ext_bin/linux/64/primer3_core +0 -0
- data/lib/qu/cmdwrapper/ext_bin/linux/64/twoBitToFa +0 -0
- data/lib/qu/cmdwrapper/ext_bin/mac/32/faToTwoBit +0 -0
- data/lib/qu/cmdwrapper/ext_bin/mac/32/ntthal +0 -0
- data/lib/qu/cmdwrapper/ext_bin/mac/32/oligotm +0 -0
- data/lib/qu/cmdwrapper/ext_bin/mac/32/primer3_core +0 -0
- data/lib/qu/cmdwrapper/ext_bin/mac/32/twoBitToFa +0 -0
- data/lib/qu/cmdwrapper/ext_bin/mac/64/faToTwoBit +0 -0
- data/lib/qu/cmdwrapper/ext_bin/mac/64/ntthal +0 -0
- data/lib/qu/cmdwrapper/ext_bin/mac/64/oligotm +0 -0
- data/lib/qu/cmdwrapper/ext_bin/mac/64/primer3_core +0 -0
- data/lib/qu/cmdwrapper/ext_bin/mac/64/twoBitToFa +0 -0
- data/lib/qu/cmdwrapper/primer3_config/dangle.dh +128 -0
- data/lib/qu/cmdwrapper/primer3_config/dangle.ds +128 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/dangle_i.dh +131 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/dangle_i.ds +131 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/loops_i.dh +34 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/loops_i.ds +31 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/stack_i.dh +257 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/stack_i.ds +256 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/stackmm_i_mm.dh +257 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/stackmm_i_mm.ds +256 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/tetraloop_i.dh +79 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/tetraloop_i.ds +81 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/triloop_i.dh +21 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/triloop_i.ds +18 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/tstack2_i.dh +256 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/tstack2_i.ds +256 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/tstack_i.dh +256 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/tstack_i.ds +256 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/tstack_tm_inf_i.dh +256 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/tstack_tm_inf_i.ds +256 -0
- data/lib/qu/cmdwrapper/primer3_config/loops.dh +30 -0
- data/lib/qu/cmdwrapper/primer3_config/loops.ds +30 -0
- data/lib/qu/cmdwrapper/primer3_config/stack.dh +256 -0
- data/lib/qu/cmdwrapper/primer3_config/stack.ds +256 -0
- data/lib/qu/cmdwrapper/primer3_config/stackmm.dh +256 -0
- data/lib/qu/cmdwrapper/primer3_config/stackmm.ds +256 -0
- data/lib/qu/cmdwrapper/primer3_config/tetraloop.dh +77 -0
- data/lib/qu/cmdwrapper/primer3_config/tetraloop.ds +77 -0
- data/lib/qu/cmdwrapper/primer3_config/triloop.dh +16 -0
- data/lib/qu/cmdwrapper/primer3_config/triloop.ds +16 -0
- data/lib/qu/cmdwrapper/primer3_config/tstack.dh +256 -0
- data/lib/qu/cmdwrapper/primer3_config/tstack2.dh +256 -0
- data/lib/qu/cmdwrapper/primer3_config/tstack2.ds +256 -0
- data/lib/qu/cmdwrapper/primer3_config/tstack_tm_inf.ds +256 -0
- data/lib/qu/cmdwrapper/version.rb +5 -0
- data/qu-cmdwrapper.gemspec +24 -0
- metadata +137 -0
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