qu-cmdwrapper 1.0.0
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- checksums.yaml +7 -0
- data/.gitignore +17 -0
- data/Gemfile +5 -0
- data/LICENSE.txt +22 -0
- data/README.md +32 -0
- data/Rakefile +1 -0
- data/lib/qu/cmdwrapper.rb +10 -0
- data/lib/qu/cmdwrapper/cmd.rb +109 -0
- data/lib/qu/cmdwrapper/ext_bin/linux/32/faToTwoBit +0 -0
- data/lib/qu/cmdwrapper/ext_bin/linux/32/ntdpal +0 -0
- data/lib/qu/cmdwrapper/ext_bin/linux/32/ntthal +0 -0
- data/lib/qu/cmdwrapper/ext_bin/linux/32/oligotm +0 -0
- data/lib/qu/cmdwrapper/ext_bin/linux/32/primer3_core +0 -0
- data/lib/qu/cmdwrapper/ext_bin/linux/32/twoBitToFa +0 -0
- data/lib/qu/cmdwrapper/ext_bin/linux/64/faToTwoBit +0 -0
- data/lib/qu/cmdwrapper/ext_bin/linux/64/ntdpal +0 -0
- data/lib/qu/cmdwrapper/ext_bin/linux/64/ntthal +0 -0
- data/lib/qu/cmdwrapper/ext_bin/linux/64/oligotm +0 -0
- data/lib/qu/cmdwrapper/ext_bin/linux/64/primer3_core +0 -0
- data/lib/qu/cmdwrapper/ext_bin/linux/64/twoBitToFa +0 -0
- data/lib/qu/cmdwrapper/ext_bin/mac/32/faToTwoBit +0 -0
- data/lib/qu/cmdwrapper/ext_bin/mac/32/ntthal +0 -0
- data/lib/qu/cmdwrapper/ext_bin/mac/32/oligotm +0 -0
- data/lib/qu/cmdwrapper/ext_bin/mac/32/primer3_core +0 -0
- data/lib/qu/cmdwrapper/ext_bin/mac/32/twoBitToFa +0 -0
- data/lib/qu/cmdwrapper/ext_bin/mac/64/faToTwoBit +0 -0
- data/lib/qu/cmdwrapper/ext_bin/mac/64/ntthal +0 -0
- data/lib/qu/cmdwrapper/ext_bin/mac/64/oligotm +0 -0
- data/lib/qu/cmdwrapper/ext_bin/mac/64/primer3_core +0 -0
- data/lib/qu/cmdwrapper/ext_bin/mac/64/twoBitToFa +0 -0
- data/lib/qu/cmdwrapper/primer3_config/dangle.dh +128 -0
- data/lib/qu/cmdwrapper/primer3_config/dangle.ds +128 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/dangle_i.dh +131 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/dangle_i.ds +131 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/loops_i.dh +34 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/loops_i.ds +31 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/stack_i.dh +257 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/stack_i.ds +256 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/stackmm_i_mm.dh +257 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/stackmm_i_mm.ds +256 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/tetraloop_i.dh +79 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/tetraloop_i.ds +81 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/triloop_i.dh +21 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/triloop_i.ds +18 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/tstack2_i.dh +256 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/tstack2_i.ds +256 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/tstack_i.dh +256 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/tstack_i.ds +256 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/tstack_tm_inf_i.dh +256 -0
- data/lib/qu/cmdwrapper/primer3_config/interpretations/tstack_tm_inf_i.ds +256 -0
- data/lib/qu/cmdwrapper/primer3_config/loops.dh +30 -0
- data/lib/qu/cmdwrapper/primer3_config/loops.ds +30 -0
- data/lib/qu/cmdwrapper/primer3_config/stack.dh +256 -0
- data/lib/qu/cmdwrapper/primer3_config/stack.ds +256 -0
- data/lib/qu/cmdwrapper/primer3_config/stackmm.dh +256 -0
- data/lib/qu/cmdwrapper/primer3_config/stackmm.ds +256 -0
- data/lib/qu/cmdwrapper/primer3_config/tetraloop.dh +77 -0
- data/lib/qu/cmdwrapper/primer3_config/tetraloop.ds +77 -0
- data/lib/qu/cmdwrapper/primer3_config/triloop.dh +16 -0
- data/lib/qu/cmdwrapper/primer3_config/triloop.ds +16 -0
- data/lib/qu/cmdwrapper/primer3_config/tstack.dh +256 -0
- data/lib/qu/cmdwrapper/primer3_config/tstack2.dh +256 -0
- data/lib/qu/cmdwrapper/primer3_config/tstack2.ds +256 -0
- data/lib/qu/cmdwrapper/primer3_config/tstack_tm_inf.ds +256 -0
- data/lib/qu/cmdwrapper/version.rb +5 -0
- data/qu-cmdwrapper.gemspec +24 -0
- metadata +137 -0
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# coding: utf-8
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lib = File.expand_path('../lib', __FILE__)
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$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
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require 'qu/cmdwrapper/version'
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Gem::Specification.new do |spec|
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spec.name = "qu-cmdwrapper"
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spec.version = Qu::Cmdwrapper::VERSION
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spec.authors = ["Wubin Qu"]
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spec.email = ["quwubin@gmail.com"]
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spec.description = %q{A wrapper for command-line tools, mostly are bioinformatics related tools}
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spec.summary = %q{A wrapper for command-line tools}
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spec.homepage = "https://github.com/quwubin/qu-cmdwrapper"
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spec.license = "MIT"
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spec.files = `git ls-files`.split($/)
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spec.executables = spec.files.grep(%r{^bin/}) { |f| File.basename(f) }
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spec.test_files = spec.files.grep(%r{^(test|spec|features)/})
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spec.require_paths = ["lib"]
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spec.add_runtime_dependency 'qu-utils', '~> 1.0'
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spec.add_development_dependency "bundler", "~> 1.3"
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end
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metadata
ADDED
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--- !ruby/object:Gem::Specification
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name: qu-cmdwrapper
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version: !ruby/object:Gem::Version
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version: 1.0.0
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platform: ruby
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authors:
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- Wubin Qu
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2014-04-15 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: qu-utils
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '1.0'
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '1.0'
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- !ruby/object:Gem::Dependency
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name: bundler
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '1.3'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '1.3'
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description: A wrapper for command-line tools, mostly are bioinformatics related tools
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email:
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- quwubin@gmail.com
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executables: []
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extensions: []
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extra_rdoc_files: []
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files:
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- ".gitignore"
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- Gemfile
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- LICENSE.txt
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- README.md
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- Rakefile
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- lib/qu/cmdwrapper.rb
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- lib/qu/cmdwrapper/cmd.rb
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- lib/qu/cmdwrapper/ext_bin/linux/32/faToTwoBit
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- lib/qu/cmdwrapper/ext_bin/linux/32/ntdpal
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57
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- lib/qu/cmdwrapper/ext_bin/linux/32/ntthal
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58
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- lib/qu/cmdwrapper/ext_bin/linux/32/oligotm
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59
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- lib/qu/cmdwrapper/ext_bin/linux/32/primer3_core
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- lib/qu/cmdwrapper/ext_bin/linux/32/twoBitToFa
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- lib/qu/cmdwrapper/ext_bin/linux/64/faToTwoBit
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- lib/qu/cmdwrapper/ext_bin/linux/64/ntdpal
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- lib/qu/cmdwrapper/ext_bin/linux/64/ntthal
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- lib/qu/cmdwrapper/ext_bin/linux/64/oligotm
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- lib/qu/cmdwrapper/ext_bin/linux/64/primer3_core
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- lib/qu/cmdwrapper/ext_bin/linux/64/twoBitToFa
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- lib/qu/cmdwrapper/ext_bin/mac/32/faToTwoBit
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- lib/qu/cmdwrapper/ext_bin/mac/32/ntthal
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- lib/qu/cmdwrapper/ext_bin/mac/32/oligotm
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70
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- lib/qu/cmdwrapper/ext_bin/mac/32/primer3_core
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- lib/qu/cmdwrapper/ext_bin/mac/32/twoBitToFa
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72
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- lib/qu/cmdwrapper/ext_bin/mac/64/faToTwoBit
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73
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- lib/qu/cmdwrapper/ext_bin/mac/64/ntthal
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74
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- lib/qu/cmdwrapper/ext_bin/mac/64/oligotm
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75
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- lib/qu/cmdwrapper/ext_bin/mac/64/primer3_core
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76
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- lib/qu/cmdwrapper/ext_bin/mac/64/twoBitToFa
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77
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- lib/qu/cmdwrapper/primer3_config/dangle.dh
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78
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- lib/qu/cmdwrapper/primer3_config/dangle.ds
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79
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- lib/qu/cmdwrapper/primer3_config/interpretations/dangle_i.dh
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80
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- lib/qu/cmdwrapper/primer3_config/interpretations/dangle_i.ds
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81
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- lib/qu/cmdwrapper/primer3_config/interpretations/loops_i.dh
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82
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- lib/qu/cmdwrapper/primer3_config/interpretations/loops_i.ds
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- lib/qu/cmdwrapper/primer3_config/interpretations/stack_i.dh
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- lib/qu/cmdwrapper/primer3_config/interpretations/stack_i.ds
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- lib/qu/cmdwrapper/primer3_config/interpretations/stackmm_i_mm.dh
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- lib/qu/cmdwrapper/primer3_config/interpretations/stackmm_i_mm.ds
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87
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- lib/qu/cmdwrapper/primer3_config/interpretations/tetraloop_i.dh
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- lib/qu/cmdwrapper/primer3_config/interpretations/tetraloop_i.ds
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- lib/qu/cmdwrapper/primer3_config/interpretations/triloop_i.dh
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90
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- lib/qu/cmdwrapper/primer3_config/interpretations/triloop_i.ds
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91
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- lib/qu/cmdwrapper/primer3_config/interpretations/tstack2_i.dh
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92
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- lib/qu/cmdwrapper/primer3_config/interpretations/tstack2_i.ds
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93
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- lib/qu/cmdwrapper/primer3_config/interpretations/tstack_i.dh
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94
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- lib/qu/cmdwrapper/primer3_config/interpretations/tstack_i.ds
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95
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- lib/qu/cmdwrapper/primer3_config/interpretations/tstack_tm_inf_i.dh
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96
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- lib/qu/cmdwrapper/primer3_config/interpretations/tstack_tm_inf_i.ds
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- lib/qu/cmdwrapper/primer3_config/loops.dh
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98
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- lib/qu/cmdwrapper/primer3_config/loops.ds
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- lib/qu/cmdwrapper/primer3_config/stack.dh
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- lib/qu/cmdwrapper/primer3_config/stack.ds
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101
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- lib/qu/cmdwrapper/primer3_config/stackmm.dh
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102
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- lib/qu/cmdwrapper/primer3_config/stackmm.ds
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103
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- lib/qu/cmdwrapper/primer3_config/tetraloop.dh
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- lib/qu/cmdwrapper/primer3_config/tetraloop.ds
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105
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- lib/qu/cmdwrapper/primer3_config/triloop.dh
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106
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- lib/qu/cmdwrapper/primer3_config/triloop.ds
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107
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- lib/qu/cmdwrapper/primer3_config/tstack.dh
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108
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- lib/qu/cmdwrapper/primer3_config/tstack2.dh
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109
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- lib/qu/cmdwrapper/primer3_config/tstack2.ds
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110
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- lib/qu/cmdwrapper/primer3_config/tstack_tm_inf.ds
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111
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- lib/qu/cmdwrapper/version.rb
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112
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- qu-cmdwrapper.gemspec
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113
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homepage: https://github.com/quwubin/qu-cmdwrapper
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licenses:
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- MIT
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metadata: {}
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post_install_message:
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rdoc_options: []
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require_paths:
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- lib
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required_ruby_version: !ruby/object:Gem::Requirement
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requirements:
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123
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- - ">="
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124
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- !ruby/object:Gem::Version
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version: '0'
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required_rubygems_version: !ruby/object:Gem::Requirement
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requirements:
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128
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- - ">="
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129
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- !ruby/object:Gem::Version
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version: '0'
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requirements: []
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rubyforge_project:
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rubygems_version: 2.2.0
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signing_key:
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specification_version: 4
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summary: A wrapper for command-line tools
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test_files: []
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