pubannotation_evaluator 1.0.1 → 1.0.2
Sign up to get free protection for your applications and to get access to all the features.
checksums.yaml
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
---
|
|
2
2
|
SHA256:
|
|
3
|
-
metadata.gz:
|
|
4
|
-
data.tar.gz:
|
|
3
|
+
metadata.gz: 6fa609f2eaa40072aaf68f19d943908cf959c68c951cfabe7c530fae96efdbe8
|
|
4
|
+
data.tar.gz: 66e92d37b5db14676152c17d777ff25071844e3e4297ec8bb5cd4633cc867470
|
|
5
5
|
SHA512:
|
|
6
|
-
metadata.gz:
|
|
7
|
-
data.tar.gz:
|
|
6
|
+
metadata.gz: ca65f506b81afaa8eb2fc8af8acebda766db0a66ec8d317796df7934ed6f92227ba7364004f6c7bfe507c790c067bea67d4887c7137b2cf980f35fe6efcdca7d
|
|
7
|
+
data.tar.gz: '0607055296bb34c586a7d8c03e91a71d5781a76478ae1673501dc29fe85eeda0f55e6e10584b906d9b2b8268bbf08cefef7815328723dee20cce16c8b5cf912a'
|
|
@@ -315,6 +315,9 @@ class PubannotationEvaluator
|
|
|
315
315
|
precision = counts[:study].keys.inject({}){|m, k| m.merge(k => counts[:matched_study][k].to_f / counts[:study][k]) if counts[:study][k] > 0}
|
|
316
316
|
recall = counts[:reference].keys.inject({}){|m, k| m.merge(k => counts[:matched_reference][k].to_f / counts[:reference][k]) if counts[:reference][k] > 0}
|
|
317
317
|
|
|
318
|
+
precision ||= {}
|
|
319
|
+
recall ||= {}
|
|
320
|
+
|
|
318
321
|
keys = (counts[:study].keys + counts[:reference].keys).uniq
|
|
319
322
|
fscore = keys.inject({}) do |m, k|
|
|
320
323
|
_p = precision[k]
|
|
@@ -324,7 +327,7 @@ class PubannotationEvaluator
|
|
|
324
327
|
else
|
|
325
328
|
_p ? _p : _r
|
|
326
329
|
end
|
|
327
|
-
m.merge(k => _f)
|
|
330
|
+
_f.nil? ? m : m.merge(k => _f)
|
|
328
331
|
end
|
|
329
332
|
|
|
330
333
|
{
|
metadata
CHANGED
|
@@ -1,14 +1,14 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: pubannotation_evaluator
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 1.0.
|
|
4
|
+
version: 1.0.2
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- Jin-Dong Kim
|
|
8
8
|
autorequire:
|
|
9
9
|
bindir: bin
|
|
10
10
|
cert_chain: []
|
|
11
|
-
date: 2019-04-
|
|
11
|
+
date: 2019-04-30 00:00:00.000000000 Z
|
|
12
12
|
dependencies: []
|
|
13
13
|
description: A tool to evaluate the accuracy of a set of annotations.
|
|
14
14
|
email: jdkim@dbcls.rois.ac.jp
|
|
@@ -40,7 +40,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
|
40
40
|
version: '0'
|
|
41
41
|
requirements: []
|
|
42
42
|
rubyforge_project:
|
|
43
|
-
rubygems_version: 2.7.
|
|
43
|
+
rubygems_version: 2.7.9
|
|
44
44
|
signing_key:
|
|
45
45
|
specification_version: 4
|
|
46
46
|
summary: It compares a set of annotations (study annotations) against another set
|