propane 2.9.0-java → 2.9.1-java

data/src/main/java/processing/data/DoubleList.java

@@ -0,0 +1,928 @@
+package processing.data;
+
+import java.io.File;
+import java.io.PrintWriter;
+import java.util.Arrays;
+import java.util.Iterator;
+import java.util.Random;
+
+import processing.core.PApplet;
+
+
+/**
+ * Helper class for a list of floats. Lists are designed to have some of the
+ * features of ArrayLists, but to maintain the simplicity and efficiency of
+ * working with arrays.
+ *
+ * Functions like sort() and shuffle() always act on the list itself. To get
+ * a sorted copy, use list.copy().sort().
+ *
+ * @webref data:composite
+ * @see IntList
+ * @see StringList
+ */
+public class DoubleList implements Iterable<Double> {
+  int count;
+  double[] data;
+
+
+  public DoubleList() {
+    data = new double[10];
+  }
+
+
+  /**
+   * @nowebref
+   */
+  public DoubleList(int length) {
+    data = new double[length];
+  }
+
+
+  /**
+   * @nowebref
+   */
+  public DoubleList(double[] list) {
+    count = list.length;
+    data = new double[count];
+    System.arraycopy(list, 0, data, 0, count);
+  }
+
+
+  /**
+   * Construct an FloatList from an iterable pile of objects.
+   * For instance, a double array, an array of strings, who knows).
+   * Un-parseable or null values will be set to NaN.
+   * @nowebref
+   */
+  public DoubleList(Iterable<Object> iter) {
+    this(10);
+    for (Object o : iter) {
+      if (o == null) {
+        append(Double.NaN);
+      } else if (o instanceof Number) {
+        append(((Number) o).doubleValue());
+      } else {
+        append(PApplet.parseFloat(o.toString().trim()));
+      }
+    }
+    crop();
+  }
+
+
+  /**
+   * Construct an FloatList from a random pile of objects.
+   * Un-parseable or null values will be set to NaN.
+   */
+  public DoubleList(Object... items) {
+    // nuts, no good way to pass missingValue to this fn (varargs must be last)
+    final double missingValue = Double.NaN;
+
+    count = items.length;
+    data = new double[count];
+    int index = 0;
+    for (Object o : items) {
+      double value = missingValue;
+      if (o != null) {
+        if (o instanceof Number) {
+          value = ((Number) o).doubleValue();
+        } else {
+          try {
+            value = Double.parseDouble(o.toString().trim());
+          } catch (NumberFormatException nfe) {
+            value = missingValue;
+          }
+        }
+      }
+      data[index++] = value;
+    }
+  }
+
+
+  /**
+   * Improve efficiency by removing allocated but unused entries from the
+   * internal array used to store the data. Set to private, though it could
+   * be useful to have this public if lists are frequently making drastic
+   * size changes (from very large to very small).
+   */
+  private void crop() {
+    if (count != data.length) {
+      data = PApplet.subset(data, 0, count);
+    }
+  }
+
+
+  /**
+   * Get the length of the list.
+   *
+   * @webref doublelist:method
+   * @brief Get the length of the list
+   */
+  public int size() {
+    return count;
+  }
+
+
+  public void resize(int length) {
+    if (length > data.length) {
+      double[] temp = new double[length];
+      System.arraycopy(data, 0, temp, 0, count);
+      data = temp;
+
+    } else if (length > count) {
+      Arrays.fill(data, count, length, 0);
+    }
+    count = length;
+  }
+
+
+  /**
+   * Remove all entries from the list.
+   *
+   * @webref doublelist:method
+   * @brief Remove all entries from the list
+   */
+  public void clear() {
+    count = 0;
+  }
+
+
+  /**
+   * Get an entry at a particular index.
+   *
+   * @webref doublelist:method
+   * @brief Get an entry at a particular index
+   */
+  public double get(int index) {
+    if (index >= count) {
+      throw new ArrayIndexOutOfBoundsException(index);
+    }
+    return data[index];
+  }
+
+
+  /**
+   * Set the entry at a particular index. If the index is past the length of
+   * the list, it'll expand the list to accommodate, and fill the intermediate
+   * entries with 0s.
+   *
+   * @webref doublelist:method
+   * @brief Set the entry at a particular index
+   */
+  public void set(int index, double what) {
+    if (index >= count) {
+      data = PApplet.expand(data, index+1);
+      for (int i = count; i < index; i++) {
+        data[i] = 0;
+      }
+      count = index+1;
+    }
+    data[index] = what;
+  }
+
+
+  /** Just an alias for append(), but matches pop() */
+  public void push(double value) {
+    append(value);
+  }
+
+
+  public double pop() {
+    if (count == 0) {
+      throw new RuntimeException("Can't call pop() on an empty list");
+    }
+    double value = get(count-1);
+    count--;
+    return value;
+  }
+
+
+  /**
+   * Remove an element from the specified index.
+   *
+   * @webref doublelist:method
+   * @brief Remove an element from the specified index
+   */
+  public double remove(int index) {
+    if (index < 0 || index >= count) {
+      throw new ArrayIndexOutOfBoundsException(index);
+    }
+    double entry = data[index];
+//    int[] outgoing = new int[count - 1];
+//    System.arraycopy(data, 0, outgoing, 0, index);
+//    count--;
+//    System.arraycopy(data, index + 1, outgoing, 0, count - index);
+//    data = outgoing;
+    // For most cases, this actually appears to be faster
+    // than arraycopy() on an array copying into itself.
+    for (int i = index; i < count-1; i++) {
+      data[i] = data[i+1];
+    }
+    count--;
+    return entry;
+  }
+
+
+  // Remove the first instance of a particular value,
+  // and return the index at which it was found.
+  public int removeValue(int value) {
+    int index = index(value);
+    if (index != -1) {
+      remove(index);
+      return index;
+    }
+    return -1;
+  }
+
+
+  // Remove all instances of a particular value,
+  // and return the number of values found and removed
+  public int removeValues(int value) {
+    int ii = 0;
+    if (Double.isNaN(value)) {
+      for (int i = 0; i < count; i++) {
+        if (!Double.isNaN(data[i])) {
+          data[ii++] = data[i];
+        }
+      }
+    } else {
+      for (int i = 0; i < count; i++) {
+        if (data[i] != value) {
+          data[ii++] = data[i];
+        }
+      }
+    }
+    int removed = count - ii;
+    count = ii;
+    return removed;
+  }
+
+
+  /** Replace the first instance of a particular value */
+  public boolean replaceValue(double value, double newValue) {
+    if (Double.isNaN(value)) {
+      for (int i = 0; i < count; i++) {
+        if (Double.isNaN(data[i])) {
+          data[i] = newValue;
+          return true;
+        }
+      }
+    } else {
+      int index = index(value);
+      if (index != -1) {
+        data[index] = newValue;
+        return true;
+      }
+    }
+    return false;
+  }
+
+
+  /** Replace all instances of a particular value */
+  public boolean replaceValues(double value, double newValue) {
+    boolean changed = false;
+    if (Double.isNaN(value)) {
+      for (int i = 0; i < count; i++) {
+        if (Double.isNaN(data[i])) {
+          data[i] = newValue;
+          changed = true;
+        }
+      }
+    } else {
+      for (int i = 0; i < count; i++) {
+        if (data[i] == value) {
+          data[i] = newValue;
+          changed = true;
+        }
+      }
+    }
+    return changed;
+  }
+
+
+
+  /**
+   * Add a new entry to the list.
+   *
+   * @webref doublelist:method
+   * @brief Add a new entry to the list
+   */
+  public void append(double value) {
+    if (count == data.length) {
+      data = PApplet.expand(data);
+    }
+    data[count++] = value;
+  }
+
+
+  public void append(double[] values) {
+    for (double v : values) {
+      append(v);
+    }
+  }
+
+
+  public void append(DoubleList list) {
+    for (double v : list.values()) {  // will concat the list...
+      append(v);
+    }
+  }
+
+
+  /** Add this value, but only if it's not already in the list. */
+  public void appendUnique(double value) {
+    if (!hasValue(value)) {
+      append(value);
+    }
+  }
+
+
+//  public void insert(int index, int value) {
+//    if (index+1 > count) {
+//      if (index+1 < data.length) {
+//    }
+//  }
+//    if (index >= data.length) {
+//      data = PApplet.expand(data, index+1);
+//      data[index] = value;
+//      count = index+1;
+//
+//    } else if (count == data.length) {
+//    if (index >= count) {
+//      //int[] temp = new int[count << 1];
+//      System.arraycopy(data, 0, temp, 0, index);
+//      temp[index] = value;
+//      System.arraycopy(data, index, temp, index+1, count - index);
+//      data = temp;
+//
+//    } else {
+//      // data[] has room to grow
+//      // for() loop believed to be faster than System.arraycopy over itself
+//      for (int i = count; i > index; --i) {
+//        data[i] = data[i-1];
+//      }
+//      data[index] = value;
+//      count++;
+//    }
+//  }
+
+
+  public void insert(int index, double value) {
+    insert(index, new double[] { value });
+  }
+
+
+  // same as splice
+  public void insert(int index, double[] values) {
+    if (index < 0) {
+      throw new IllegalArgumentException("insert() index cannot be negative: it was " + index);
+    }
+    if (index >= data.length) {
+      throw new IllegalArgumentException("insert() index " + index + " is past the end of this list");
+    }
+
+    double[] temp = new double[count + values.length];
+
+    // Copy the old values, but not more than already exist
+    System.arraycopy(data, 0, temp, 0, Math.min(count, index));
+
+    // Copy the new values into the proper place
+    System.arraycopy(values, 0, temp, index, values.length);
+
+//    if (index < count) {
+    // The index was inside count, so it's a true splice/insert
+    System.arraycopy(data, index, temp, index+values.length, count - index);
+    count = count + values.length;
+//    } else {
+//      // The index was past 'count', so the new count is weirder
+//      count = index + values.length;
+//    }
+    data = temp;
+  }
+
+
+  public void insert(int index, DoubleList list) {
+    insert(index, list.values());
+  }
+
+
+    // below are aborted attempts at more optimized versions of the code
+    // that are harder to read and debug...
+
+//    if (index + values.length >= count) {
+//      // We're past the current 'count', check to see if we're still allocated
+//      // index 9, data.length = 10, values.length = 1
+//      if (index + values.length < data.length) {
+//        // There's still room for these entries, even though it's past 'count'.
+//        // First clear out the entries leading up to it, however.
+//        for (int i = count; i < index; i++) {
+//          data[i] = 0;
+//        }
+//        data[index] =
+//      }
+//      if (index >= data.length) {
+//        int length = index + values.length;
+//        int[] temp = new int[length];
+//        System.arraycopy(data, 0, temp, 0, count);
+//        System.arraycopy(values, 0, temp, index, values.length);
+//        data = temp;
+//        count = data.length;
+//      } else {
+//
+//      }
+//
+//    } else if (count == data.length) {
+//      int[] temp = new int[count << 1];
+//      System.arraycopy(data, 0, temp, 0, index);
+//      temp[index] = value;
+//      System.arraycopy(data, index, temp, index+1, count - index);
+//      data = temp;
+//
+//    } else {
+//      // data[] has room to grow
+//      // for() loop believed to be faster than System.arraycopy over itself
+//      for (int i = count; i > index; --i) {
+//        data[i] = data[i-1];
+//      }
+//      data[index] = value;
+//      count++;
+//    }
+
+
+  /** Return the first index of a particular value. */
+  public int index(double what) {
+    /*
+    if (indexCache != null) {
+      try {
+        return indexCache.get(what);
+      } catch (Exception e) {  // not there
+        return -1;
+      }
+    }
+    */
+    for (int i = 0; i < count; i++) {
+      if (data[i] == what) {
+        return i;
+      }
+    }
+    return -1;
+  }
+
+
+  /**
+   * @webref doublelist:method
+   * @brief Check if a number is a part of the list
+   */
+  public boolean hasValue(double value) {
+    if (Double.isNaN(value)) {
+      for (int i = 0; i < count; i++) {
+        if (Double.isNaN(data[i])) {
+          return true;
+        }
+      }
+    } else {
+      for (int i = 0; i < count; i++) {
+        if (data[i] == value) {
+          return true;
+        }
+      }
+    }
+    return false;
+  }
+
+
+  private void boundsProblem(int index, String method) {
+    final String msg = String.format("The list size is %d. " +
+      "You cannot %s() to element %d.", count, method, index);
+    throw new ArrayIndexOutOfBoundsException(msg);
+  }
+
+
+  /**
+   * @webref doublelist:method
+   * @brief Add to a value
+   */
+  public void add(int index, double amount) {
+    if (index < count) {
+      data[index] += amount;
+    } else {
+      boundsProblem(index, "add");
+    }
+  }
+
+
+  /**
+   * @webref doublelist:method
+   * @brief Subtract from a value
+   */
+  public void sub(int index, double amount) {
+    if (index < count) {
+      data[index] -= amount;
+    } else {
+      boundsProblem(index, "sub");
+    }
+  }
+
+
+  /**
+   * @webref doublelist:method
+   * @brief Multiply a value
+   */
+  public void mult(int index, double amount) {
+    if (index < count) {
+      data[index] *= amount;
+    } else {
+      boundsProblem(index, "mult");
+    }
+  }
+
+
+  /**
+   * @webref doublelist:method
+   * @brief Divide a value
+   */
+  public void div(int index, double amount) {
+    if (index < count) {
+      data[index] /= amount;
+    } else {
+      boundsProblem(index, "div");
+    }
+  }
+
+
+  private void checkMinMax(String functionName) {
+    if (count == 0) {
+      String msg =
+        String.format("Cannot use %s() on an empty %s.",
+                      functionName, getClass().getSimpleName());
+      throw new RuntimeException(msg);
+    }
+  }
+
+
+  /**
+   * @webref doublelist:method
+   * @brief Return the smallest value
+   */
+  public double min() {
+    checkMinMax("min");
+    int index = minIndex();
+    return index == -1 ? Double.NaN : data[index];
+  }
+
+
+  public int minIndex() {
+    checkMinMax("minIndex");
+    double m = Double.NaN;
+    int mi = -1;
+    for (int i = 0; i < count; i++) {
+      // find one good value to start
+      if (data[i] == data[i]) {
+        m = data[i];
+        mi = i;
+
+        // calculate the rest
+        for (int j = i+1; j < count; j++) {
+          double d = data[j];
+          if (!Double.isNaN(d) && (d < m)) {
+            m = data[j];
+            mi = j;
+          }
+        }
+        break;
+      }
+    }
+    return mi;
+  }
+
+
+  /**
+   * @webref doublelist:method
+   * @brief Return the largest value
+   */
+  public double max() {
+    checkMinMax("max");
+    int index = maxIndex();
+    return index == -1 ? Double.NaN : data[index];
+  }
+
+
+  public int maxIndex() {
+    checkMinMax("maxIndex");
+    double m = Double.NaN;
+    int mi = -1;
+    for (int i = 0; i < count; i++) {
+      // find one good value to start
+      if (data[i] == data[i]) {
+        m = data[i];
+        mi = i;
+
+        // calculate the rest
+        for (int j = i+1; j < count; j++) {
+          double d = data[j];
+          if (!Double.isNaN(d) && (d > m)) {
+            m = data[j];
+            mi = j;
+          }
+        }
+        break;
+      }
+    }
+    return mi;
+  }
+
+
+  public double sum() {
+    double sum = 0;
+    for (int i = 0; i < count; i++) {
+      sum += data[i];
+    }
+    return sum;
+  }
+
+
+  /**
+   * Sorts the array in place.
+   *
+   * @webref doublelist:method
+   * @brief Sorts an array, lowest to highest
+   */
+  public void sort() {
+    Arrays.sort(data, 0, count);
+  }
+
+
+  /**
+   * Reverse sort, orders values from highest to lowest
+   *
+   * @webref doublelist:method
+   * @brief Reverse sort, orders values from highest to lowest
+   */
+  public void sortReverse() {
+    new Sort() {
+      @Override
+      public int size() {
+        // if empty, don't even mess with the NaN check, it'll AIOOBE
+        if (count == 0) {
+          return 0;
+        }
+        // move NaN values to the end of the list and don't sort them
+        int right = count - 1;
+        while (data[right] != data[right]) {
+          right--;
+          if (right == -1) {  // all values are NaN
+            return 0;
+          }
+        }
+        for (int i = right; i >= 0; --i) {
+          double v = data[i];
+          if (v != v) {
+            data[i] = data[right];
+            data[right] = v;
+            --right;
+          }
+        }
+        return right + 1;
+      }
+
+      @Override
+      public int compare(int a, int b) {
+        double diff = data[b] - data[a];
+        return diff == 0 ? 0 : (diff < 0 ? -1 : 1);
+      }
+
+      @Override
+      public void swap(int a, int b) {
+        double temp = data[a];
+        data[a] = data[b];
+        data[b] = temp;
+      }
+    }.run();
+  }
+
+
+  // use insert()
+//  public void splice(int index, int value) {
+//  }
+
+
+//  public void subset(int start) {
+//    subset(start, count - start);
+//  }
+
+
+//  public void subset(int start, int num) {
+//    for (int i = 0; i < num; i++) {
+//      data[i] = data[i+start];
+//    }
+//    count = num;
+//  }
+
+
+  /**
+   * @webref doublelist:method
+   * @brief Reverse the order of the list elements
+   */
+  public void reverse() {
+    int ii = count - 1;
+    for (int i = 0; i < count/2; i++) {
+      double t = data[i];
+      data[i] = data[ii];
+      data[ii] = t;
+      --ii;
+    }
+  }
+
+
+  /**
+   * Randomize the order of the list elements. Note that this does not
+   * obey the randomSeed() function in PApplet.
+   *
+   * @webref doublelist:method
+   * @brief Randomize the order of the list elements
+   */
+  public void shuffle() {
+    Random r = new Random();
+    int num = count;
+    while (num > 1) {
+      int value = r.nextInt(num);
+      num--;
+      double temp = data[num];
+      data[num] = data[value];
+      data[value] = temp;
+    }
+  }
+
+
+  /**
+   * Randomize the list order using the random() function from the specified
+   * sketch, allowing shuffle() to use its current randomSeed() setting.
+   */
+  public void shuffle(PApplet sketch) {
+    int num = count;
+    while (num > 1) {
+      int value = (int) sketch.random(num);
+      num--;
+      double temp = data[num];
+      data[num] = data[value];
+      data[value] = temp;
+    }
+  }
+
+
+  public DoubleList copy() {
+    DoubleList outgoing = new DoubleList(data);
+    outgoing.count = count;
+    return outgoing;
+  }
+
+
+  /**
+   * Returns the actual array being used to store the data. For advanced users,
+   * this is the fastest way to access a large list. Suitable for iterating
+   * with a for() loop, but modifying the list will have terrible consequences.
+   */
+  public double[] values() {
+    crop();
+    return data;
+  }
+
+
+  /** Implemented this way so that we can use a FloatList in a for loop. */
+  @Override
+  public Iterator<Double> iterator() {
+//  }
+//
+//
+//  public Iterator<Float> valueIterator() {
+    return new Iterator<Double>() {
+      int index = -1;
+
+      public void remove() {
+        DoubleList.this.remove(index);
+        index--;
+      }
+
+      public Double next() {
+        return data[++index];
+      }
+
+      public boolean hasNext() {
+        return index+1 < count;
+      }
+    };
+  }
+
+
+  /**
+   * Create a new array with a copy of all the values.
+   * @return an array sized by the length of the list with each of the values.
+   * @webref doublelist:method
+   * @brief Create a new array with a copy of all the values
+   */
+  public double[] array() {
+    return array(null);
+  }
+
+
+  /**
+   * Copy values into the specified array. If the specified array is null or
+   * not the same size, a new array will be allocated.
+   * @param array
+   */
+  public double[] array(double[] array) {
+    if (array == null || array.length != count) {
+      array = new double[count];
+    }
+    System.arraycopy(data, 0, array, 0, count);
+    return array;
+  }
+
+
+  /**
+   * Returns a normalized version of this array. Called getPercent() for
+   * consistency with the Dict classes. It's a getter method because it needs
+   * to returns a new list (because IntList/Dict can't do percentages or
+   * normalization in place on int values).
+   */
+  public DoubleList getPercent() {
+    double sum = 0;
+    for (double value : array()) {
+      sum += value;
+    }
+    DoubleList outgoing = new DoubleList(count);
+    for (int i = 0; i < count; i++) {
+      double percent = data[i] / sum;
+      outgoing.set(i, percent);
+    }
+    return outgoing;
+  }
+
+
+  public DoubleList getSubset(int start) {
+    return getSubset(start, count - start);
+  }
+
+
+  public DoubleList getSubset(int start, int num) {
+    double[] subset = new double[num];
+    System.arraycopy(data, start, subset, 0, num);
+    return new DoubleList(subset);
+  }
+
+
+  public String join(String separator) {
+    if (count == 0) {
+      return "";
+    }
+    StringBuilder sb = new StringBuilder();
+    sb.append(data[0]);
+    for (int i = 1; i < count; i++) {
+      sb.append(separator);
+      sb.append(data[i]);
+    }
+    return sb.toString();
+  }
+
+
+  public void print() {
+    for (int i = 0; i < count; i++) {
+      System.out.format("[%d] %f%n", i, data[i]);
+    }
+  }
+
+
+  /**
+   * Save tab-delimited entries to a file (TSV format, UTF-8 encoding)
+   */
+  public void save(File file) {
+    PrintWriter writer = PApplet.createWriter(file);
+    write(writer);
+    writer.close();
+  }
+
+
+  /**
+   * Write entries to a PrintWriter, one per line
+   */
+  public void write(PrintWriter writer) {
+    for (int i = 0; i < count; i++) {
+      writer.println(data[i]);
+    }
+    writer.flush();
+  }
+
+
+  /**
+   * Return this dictionary as a String in JSON format.
+   */
+  public String toJSON() {
+    return "[ " + join(", ") + " ]";
+  }
+
+
+  @Override
+  public String toString() {
+    return getClass().getSimpleName() + " size=" + size() + " " + toJSON();
+  }
+}