pho 0.7.8 → 0.7.9
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- data/CHANGES +8 -0
- data/Rakefile +4 -2
- data/doc/rdoc/classes/Pho.html +4 -0
- data/doc/rdoc/classes/Pho/CommandLine.html +114 -114
- data/doc/rdoc/classes/Pho/DatatypeProperty.html +12 -12
- data/doc/rdoc/classes/Pho/Enrichment/StoreEnricher.html +29 -29
- data/doc/rdoc/classes/Pho/Etags.html +36 -36
- data/doc/rdoc/classes/Pho/Facet/Results.html +19 -19
- data/doc/rdoc/classes/Pho/Facet/Term.html +6 -6
- data/doc/rdoc/classes/Pho/FieldPredicateMap.html +102 -102
- data/doc/rdoc/classes/Pho/FieldWeighting.html +12 -12
- data/doc/rdoc/classes/Pho/FileManagement.html +16 -0
- data/doc/rdoc/classes/Pho/FileManagement/AbstractFileManager.html +168 -108
- data/doc/rdoc/classes/Pho/FileManagement/BNodeRewritingHandler.html +226 -0
- data/doc/rdoc/classes/Pho/FileManagement/FileManager.html +48 -35
- data/doc/rdoc/classes/Pho/FileManagement/FileSplitter.html +291 -0
- data/doc/rdoc/classes/Pho/FileManagement/RDFManager.html +22 -22
- data/doc/rdoc/classes/Pho/FileManagement/StatementHandler.html +152 -0
- data/doc/rdoc/classes/Pho/FileManagement/Util.html +212 -0
- data/doc/rdoc/classes/Pho/Job.html +64 -64
- data/doc/rdoc/classes/Pho/Jobs.html +60 -60
- data/doc/rdoc/classes/Pho/OAI/Record.html +6 -6
- data/doc/rdoc/classes/Pho/OAI/Records.html +24 -24
- data/doc/rdoc/classes/Pho/OAI/Statistics.html +12 -12
- data/doc/rdoc/classes/Pho/QueryProfile.html +66 -66
- data/doc/rdoc/classes/Pho/ResourceHash/Converter.html +36 -36
- data/doc/rdoc/classes/Pho/ResourceHash/SetAlgebra.html +12 -12
- data/doc/rdoc/classes/Pho/Snapshot.html +35 -35
- data/doc/rdoc/classes/Pho/Sparql/SparqlClient.html +74 -74
- data/doc/rdoc/classes/Pho/Sparql/SparqlHelper.html +78 -78
- data/doc/rdoc/classes/Pho/Status.html +26 -26
- data/doc/rdoc/classes/Pho/Store.html +215 -215
- data/doc/rdoc/classes/Pho/StoreSparqlClient.html +12 -12
- data/doc/rdoc/classes/Pho/Update/Changeset.html +63 -63
- data/doc/rdoc/classes/Pho/Update/ChangesetBuilder.html +24 -24
- data/doc/rdoc/classes/Pho/Update/ChangesetHelper.html +6 -6
- data/doc/rdoc/classes/Pho/Update/Changesets.html +12 -12
- data/doc/rdoc/classes/Pho/Update/LiteralStatement.html +18 -18
- data/doc/rdoc/classes/Pho/Update/ResourceStatement.html +24 -24
- data/doc/rdoc/classes/Pho/Update/Statement.html +24 -24
- data/doc/rdoc/classes/String.html +1 -1
- data/doc/rdoc/created.rid +1 -1
- data/doc/rdoc/files/CHANGES.html +13 -1
- data/doc/rdoc/files/lib/pho/file_management_rb.html +1 -1
- data/doc/rdoc/files/lib/pho/file_manager_rb.html +1 -1
- data/doc/rdoc/files/lib/pho/rdf_collection_rb.html +1 -1
- data/doc/rdoc/files/lib/pho/upload_rb.html +101 -0
- data/doc/rdoc/files/lib/pho_rb.html +4 -2
- data/doc/rdoc/fr_class_index.html +4 -0
- data/doc/rdoc/fr_file_index.html +1 -0
- data/doc/rdoc/fr_method_index.html +228 -218
- data/lib/pho.rb +4 -1
- data/lib/pho/file_management.rb +30 -1
- data/lib/pho/file_manager.rb +7 -0
- data/lib/pho/rdf_collection.rb +4 -4
- data/lib/pho/upload.rb +156 -0
- data/tests/tc_bnodehandler.rb +42 -0
- data/tests/tc_filesplitter.rb +51 -0
- data/tests/ts_pho.rb +3 -1
- metadata +56 -8
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<tr class="top-aligned-row">
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<td><strong>Class</strong></td>
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<td class="class-name-in-header">Pho::FileManagement::BNodeRewritingHandler</td>
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<td><strong>In:</strong></td>
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<td>
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<a href="../../../files/lib/pho/upload_rb.html">
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lib/pho/upload.rb
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<td>
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Object
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<div id="description">
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<p>
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Remove bnodes from the input data by assigning URIs to them
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</p>
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<p>
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This implementation generates a simple hexdigest based on the node id and
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uses that to construct a uri based on a base uri provided in the
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constructor
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<a href="#M000034">assign_uri</a>
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<a href="#M000033">handle</a>
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<a href="#M000032">new</a>
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<a name="M000032"></a>
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<span class="method-name">new</span><span class="method-args">(base)</span>
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<table>
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<tr><td valign="top">base:</td><td>base uri for URIs generated for blank nodes
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</td></tr>
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</table>
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<p><a class="source-toggle" href="#"
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onclick="toggleCode('M000032-source');return false;">[Source]</a></p>
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<div class="method-source-code" id="M000032-source">
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<pre>
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<span class="ruby-comment cmt"># File lib/pho/upload.rb, line 19</span>
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<span class="ruby-keyword kw">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">base</span>)
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<span class="ruby-ivar">@base</span> = <span class="ruby-identifier">base</span>
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<span class="ruby-keyword kw">end</span>
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</pre>
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<h3 class="section-bar">Public Instance methods</h3>
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<a name="M000034"></a>
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<div class="method-heading">
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<a href="#M000034" class="method-signature">
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<span class="method-name">assign_uri</span><span class="method-args">(node)</span>
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</a>
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<p>
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FIXME semantics for this is wrong if nodeIds are reused across datasets
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</p>
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<p><a class="source-toggle" href="#"
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onclick="toggleCode('M000034-source');return false;">[Source]</a></p>
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<div class="method-source-code" id="M000034-source">
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<pre>
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<span class="ruby-comment cmt"># File lib/pho/upload.rb, line 40</span>
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<span class="ruby-keyword kw">def</span> <span class="ruby-identifier">assign_uri</span>(<span class="ruby-identifier">node</span>)
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<span class="ruby-keyword kw">return</span> <span class="ruby-node">"#{@base}/#{Digest::MD5.hexdigest( node.id )}#self"</span>
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<span class="ruby-keyword kw">end</span>
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</pre>
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<span class="method-name">handle</span><span class="method-args">(statement)</span>
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onclick="toggleCode('M000033-source');return false;">[Source]</a></p>
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<pre>
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<span class="ruby-comment cmt"># File lib/pho/upload.rb, line 23</span>
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<span class="ruby-keyword kw">def</span> <span class="ruby-identifier">handle</span>(<span class="ruby-identifier">statement</span>)
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<span class="ruby-keyword kw">if</span> <span class="ruby-operator">!</span><span class="ruby-identifier">statement</span>.<span class="ruby-identifier">has_blank_nodes?</span>
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<span class="ruby-keyword kw">return</span> <span class="ruby-identifier">statement</span>
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<span class="ruby-keyword kw">end</span>
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<span class="ruby-identifier">subject</span> = <span class="ruby-identifier">statement</span>.<span class="ruby-identifier">subject</span>
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<span class="ruby-keyword kw">if</span> <span class="ruby-identifier">subject</span>.<span class="ruby-identifier">anonymous?</span>
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<span class="ruby-identifier">subject</span> = <span class="ruby-constant">RDF</span><span class="ruby-operator">::</span><span class="ruby-constant">URI</span>.<span class="ruby-identifier">new</span>( <span class="ruby-identifier">assign_uri</span>(<span class="ruby-identifier">subject</span>) )
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<span class="ruby-keyword kw">end</span>
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<span class="ruby-identifier">object</span> = <span class="ruby-identifier">statement</span>.<span class="ruby-identifier">object</span>
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<span class="ruby-keyword kw">if</span> <span class="ruby-identifier">object</span>.<span class="ruby-identifier">anonymous?</span>
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<span class="ruby-identifier">object</span> = <span class="ruby-constant">RDF</span><span class="ruby-operator">::</span><span class="ruby-constant">URI</span>.<span class="ruby-identifier">new</span>( <span class="ruby-identifier">assign_uri</span>(<span class="ruby-identifier">object</span>) )
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<span class="ruby-keyword kw">end</span>
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<span class="ruby-keyword kw">return</span> <span class="ruby-constant">RDF</span><span class="ruby-operator">::</span><span class="ruby-constant">Statement</span>.<span class="ruby-identifier">new</span>(<span class="ruby-identifier">subject</span>, <span class="ruby-identifier">statement</span>.<span class="ruby-identifier">predicate</span>, <span class="ruby-identifier">object</span>)
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<span class="ruby-keyword kw">end</span>
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Manages a collection of files in a directory structure, uploading them to
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the contentbox of a platform store
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Allows the base directory of the upload to be specified, giving some
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flexibility on how the files are published via the contentbox. By default
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the files will be rooted in /items/ but by specifying the base parameter in
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<span class="ruby-keyword kw">def</span> <span class="ruby-constant">FileManager</span>.<span class="ruby-identifier">name_for_file</span>(<span class="ruby-identifier">dir</span>, <span class="ruby-identifier">file</span>, <span class="ruby-identifier">base</span>=<span class="ruby-keyword kw">nil</span>)
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Supports splitting RDF data files into smaller chunks of ntriples
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<span class="method-name">new</span><span class="method-args">(dir="/tmp", triples=DEFAULT_CHUNK_SIZE, handler=Pho::FileManagement::StatementHandler.new)</span>
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Create a file splitter instance
|
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dir:: temporary directory into which split files should be written
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triples:: number of triples per split file
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handler:: statement handler to allow pre-processing of statements
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|
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<span class="ruby-keyword kw">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">dir</span>=<span class="ruby-value str">"/tmp"</span>, <span class="ruby-identifier">triples</span>=<span class="ruby-constant">DEFAULT_CHUNK_SIZE</span>,
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|
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Split a single file, in any parseable RDF format into smaller chunks of
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filename:: name of the file to split
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format:: input format, default is :ntriples
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<p><a class="source-toggle" href="#"
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onclick="toggleCode('M000030-source');return false;">[Source]</a></p>
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<pre>
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<span class="ruby-comment cmt"># File lib/pho/upload.rb, line 71</span>
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<span class="ruby-keyword kw">def</span> <span class="ruby-identifier">split_file</span>(<span class="ruby-identifier">filename</span>, <span class="ruby-identifier">format</span>=<span class="ruby-identifier">:ntriples</span>)
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<span class="ruby-identifier">basename</span> = <span class="ruby-constant">File</span>.<span class="ruby-identifier">basename</span>(<span class="ruby-identifier">filename</span>, <span class="ruby-node">".#{filename.split(".").last}"</span>)
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<span class="ruby-identifier">count</span> = <span class="ruby-value">0</span>
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<span class="ruby-identifier">stmts</span> = []
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<span class="ruby-constant">RDF</span><span class="ruby-operator">::</span><span class="ruby-constant">Reader</span>.<span class="ruby-identifier">for</span>(<span class="ruby-identifier">format</span>).<span class="ruby-identifier">new</span>(<span class="ruby-constant">File</span>.<span class="ruby-identifier">new</span>(<span class="ruby-identifier">filename</span>)) <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">reader</span><span class="ruby-operator">|</span>
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<span class="ruby-identifier">reader</span>.<span class="ruby-identifier">each_statement</span> <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">statement</span><span class="ruby-operator">|</span>
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<span class="ruby-identifier">count</span> <span class="ruby-operator">+=</span> <span class="ruby-value">1</span>
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<span class="ruby-identifier">stmts</span> <span class="ruby-operator"><<</span> <span class="ruby-ivar">@handler</span>.<span class="ruby-identifier">handle</span>( <span class="ruby-identifier">statement</span> )
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<span class="ruby-keyword kw">if</span> <span class="ruby-identifier">count</span> <span class="ruby-operator">%</span> <span class="ruby-ivar">@triples</span> <span class="ruby-operator">==</span> <span class="ruby-value">0</span>
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<span class="ruby-constant">RDF</span><span class="ruby-operator">::</span><span class="ruby-constant">Writer</span>.<span class="ruby-identifier">open</span>( <span class="ruby-constant">File</span>.<span class="ruby-identifier">join</span>(<span class="ruby-ivar">@dir</span>, <span class="ruby-node">"#{basename}_#{count}.nt"</span>) ) <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">writer</span><span class="ruby-operator">|</span>
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<span class="ruby-identifier">stmts</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">s</span><span class="ruby-operator">|</span>
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<span class="ruby-identifier">writer</span> <span class="ruby-operator"><<</span> <span class="ruby-identifier">s</span>
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<span class="ruby-keyword kw">end</span>
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<span class="ruby-keyword kw">end</span>
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<span class="ruby-identifier">stmts</span> = []
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<span class="ruby-keyword kw">end</span>
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<span class="ruby-keyword kw">end</span>
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<span class="ruby-keyword kw">end</span>
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<span class="ruby-keyword kw">if</span> <span class="ruby-operator">!</span><span class="ruby-identifier">stmts</span>.<span class="ruby-identifier">empty?</span>
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<span class="ruby-constant">RDF</span><span class="ruby-operator">::</span><span class="ruby-constant">Writer</span>.<span class="ruby-identifier">open</span>( <span class="ruby-constant">File</span>.<span class="ruby-identifier">join</span>(<span class="ruby-ivar">@dir</span>, <span class="ruby-node">"#{basename}_#{count}.nt"</span>) ) <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">writer</span><span class="ruby-operator">|</span>
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<span class="ruby-identifier">stmts</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">s</span><span class="ruby-operator">|</span>
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<span class="ruby-identifier">writer</span> <span class="ruby-operator"><<</span> <span class="ruby-identifier">s</span>
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<span class="ruby-keyword kw">end</span>
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<span class="ruby-keyword kw">end</span>
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<span class="ruby-keyword kw">end</span>
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<span class="ruby-keyword kw">end</span>
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</pre>
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<div id="method-M000031" class="method-detail">
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<a name="M000031"></a>
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<div class="method-heading">
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<a href="#M000031" class="method-signature">
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<span class="method-name">split_files</span><span class="method-args">(list_of_filenames, format=:ntriples)</span>
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</a>
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</div>
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<div class="method-description">
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<p>
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Split a list of files into smaller chunks
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</p>
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<pre>
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list_of_filenames:: array of filenames
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format:: format of the files, default is :ntriples
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</pre>
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<p><a class="source-toggle" href="#"
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onclick="toggleCode('M000031-source');return false;">[Source]</a></p>
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<div class="method-source-code" id="M000031-source">
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<pre>
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<span class="ruby-comment cmt"># File lib/pho/upload.rb, line 103</span>
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<span class="ruby-keyword kw">def</span> <span class="ruby-identifier">split_files</span>(<span class="ruby-identifier">list_of_filenames</span>, <span class="ruby-identifier">format</span>=<span class="ruby-identifier">:ntriples</span>)
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<span class="ruby-identifier">list_of_filenames</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">name</span><span class="ruby-operator">|</span>
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<span class="ruby-identifier">split_file</span>(<span class="ruby-identifier">name</span>, <span class="ruby-identifier">format</span>)
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<span class="ruby-keyword kw">end</span>
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<span class="ruby-keyword kw">end</span>
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</pre>
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<div id="validator-badges">
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<p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
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