pharmaobservatory 0.1.1 → 0.1.2

data/lib/pharmaobservatory/models/biomarkers_population_allele_frequency200_response_attribution_inner.rb

@@ -0,0 +1,315 @@
+=begin
+#Pharma Observatory Public REST API
+
+#Read-only REST API over the Pharma Observatory biomedical data platform. Reference: https://pharmaobservatory.com/api-reference
+
+The version of the OpenAPI document: 1.0.0
+
+Generated by: https://openapi-generator.tech
+Generator version: 7.13.0
+
+=end
+
+require 'date'
+require 'time'
+
+module PharmaObservatory
+  class BiomarkersPopulationAlleleFrequency200ResponseAttributionInner
+    attr_accessor :name
+
+    attr_accessor :license
+
+    attr_accessor :href
+
+    attr_accessor :license_href
+
+    # Attribute mapping from ruby-style variable name to JSON key.
+    def self.attribute_map
+      {
+        :'name' => :'name',
+        :'license' => :'license',
+        :'href' => :'href',
+        :'license_href' => :'license_href'
+      }
+    end
+
+    # Returns attribute mapping this model knows about
+    def self.acceptable_attribute_map
+      attribute_map
+    end
+
+    # Returns all the JSON keys this model knows about
+    def self.acceptable_attributes
+      acceptable_attribute_map.values
+    end
+
+    # Attribute type mapping.
+    def self.openapi_types
+      {
+        :'name' => :'String',
+        :'license' => :'String',
+        :'href' => :'String',
+        :'license_href' => :'String'
+      }
+    end
+
+    # List of attributes with nullable: true
+    def self.openapi_nullable
+      Set.new([
+      ])
+    end
+
+    # Initializes the object
+    # @param [Hash] attributes Model attributes in the form of hash
+    def initialize(attributes = {})
+      if (!attributes.is_a?(Hash))
+        fail ArgumentError, "The input argument (attributes) must be a hash in `PharmaObservatory::BiomarkersPopulationAlleleFrequency200ResponseAttributionInner` initialize method"
+      end
+
+      # check to see if the attribute exists and convert string to symbol for hash key
+      acceptable_attribute_map = self.class.acceptable_attribute_map
+      attributes = attributes.each_with_object({}) { |(k, v), h|
+        if (!acceptable_attribute_map.key?(k.to_sym))
+          fail ArgumentError, "`#{k}` is not a valid attribute in `PharmaObservatory::BiomarkersPopulationAlleleFrequency200ResponseAttributionInner`. Please check the name to make sure it's valid. List of attributes: " + acceptable_attribute_map.keys.inspect
+        end
+        h[k.to_sym] = v
+      }
+
+      if attributes.key?(:'name')
+        self.name = attributes[:'name']
+      else
+        self.name = nil
+      end
+
+      if attributes.key?(:'license')
+        self.license = attributes[:'license']
+      else
+        self.license = nil
+      end
+
+      if attributes.key?(:'href')
+        self.href = attributes[:'href']
+      else
+        self.href = nil
+      end
+
+      if attributes.key?(:'license_href')
+        self.license_href = attributes[:'license_href']
+      else
+        self.license_href = nil
+      end
+    end
+
+    # Show invalid properties with the reasons. Usually used together with valid?
+    # @return Array for valid properties with the reasons
+    def list_invalid_properties
+      warn '[DEPRECATED] the `list_invalid_properties` method is obsolete'
+      invalid_properties = Array.new
+      if @name.nil?
+        invalid_properties.push('invalid value for "name", name cannot be nil.')
+      end
+
+      if @license.nil?
+        invalid_properties.push('invalid value for "license", license cannot be nil.')
+      end
+
+      if @href.nil?
+        invalid_properties.push('invalid value for "href", href cannot be nil.')
+      end
+
+      if @license_href.nil?
+        invalid_properties.push('invalid value for "license_href", license_href cannot be nil.')
+      end
+
+      invalid_properties
+    end
+
+    # Check to see if the all the properties in the model are valid
+    # @return true if the model is valid
+    def valid?
+      warn '[DEPRECATED] the `valid?` method is obsolete'
+      return false if @name.nil?
+      return false if @license.nil?
+      return false if @href.nil?
+      return false if @license_href.nil?
+      true
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] name Value to be assigned
+    def name=(name)
+      if name.nil?
+        fail ArgumentError, 'name cannot be nil'
+      end
+
+      @name = name
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] license Value to be assigned
+    def license=(license)
+      if license.nil?
+        fail ArgumentError, 'license cannot be nil'
+      end
+
+      @license = license
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] href Value to be assigned
+    def href=(href)
+      if href.nil?
+        fail ArgumentError, 'href cannot be nil'
+      end
+
+      @href = href
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] license_href Value to be assigned
+    def license_href=(license_href)
+      if license_href.nil?
+        fail ArgumentError, 'license_href cannot be nil'
+      end
+
+      @license_href = license_href
+    end
+
+    # Checks equality by comparing each attribute.
+    # @param [Object] Object to be compared
+    def ==(o)
+      return true if self.equal?(o)
+      self.class == o.class &&
+          name == o.name &&
+          license == o.license &&
+          href == o.href &&
+          license_href == o.license_href
+    end
+
+    # @see the `==` method
+    # @param [Object] Object to be compared
+    def eql?(o)
+      self == o
+    end
+
+    # Calculates hash code according to all attributes.
+    # @return [Integer] Hash code
+    def hash
+      [name, license, href, license_href].hash
+    end
+
+    # Builds the object from hash
+    # @param [Hash] attributes Model attributes in the form of hash
+    # @return [Object] Returns the model itself
+    def self.build_from_hash(attributes)
+      return nil unless attributes.is_a?(Hash)
+      attributes = attributes.transform_keys(&:to_sym)
+      transformed_hash = {}
+      openapi_types.each_pair do |key, type|
+        if attributes.key?(attribute_map[key]) && attributes[attribute_map[key]].nil?
+          transformed_hash["#{key}"] = nil
+        elsif type =~ /\AArray<(.*)>/i
+          # check to ensure the input is an array given that the attribute
+          # is documented as an array but the input is not
+          if attributes[attribute_map[key]].is_a?(Array)
+            transformed_hash["#{key}"] = attributes[attribute_map[key]].map { |v| _deserialize($1, v) }
+          end
+        elsif !attributes[attribute_map[key]].nil?
+          transformed_hash["#{key}"] = _deserialize(type, attributes[attribute_map[key]])
+        end
+      end
+      new(transformed_hash)
+    end
+
+    # Deserializes the data based on type
+    # @param string type Data type
+    # @param string value Value to be deserialized
+    # @return [Object] Deserialized data
+    def self._deserialize(type, value)
+      case type.to_sym
+      when :Time
+        Time.parse(value)
+      when :Date
+        Date.parse(value)
+      when :String
+        value.to_s
+      when :Integer
+        value.to_i
+      when :Float
+        value.to_f
+      when :Boolean
+        if value.to_s =~ /\A(true|t|yes|y|1)\z/i
+          true
+        else
+          false
+        end
+      when :Object
+        # generic object (usually a Hash), return directly
+        value
+      when /\AArray<(?<inner_type>.+)>\z/
+        inner_type = Regexp.last_match[:inner_type]
+        value.map { |v| _deserialize(inner_type, v) }
+      when /\AHash<(?<k_type>.+?), (?<v_type>.+)>\z/
+        k_type = Regexp.last_match[:k_type]
+        v_type = Regexp.last_match[:v_type]
+        {}.tap do |hash|
+          value.each do |k, v|
+            hash[_deserialize(k_type, k)] = _deserialize(v_type, v)
+          end
+        end
+      else # model
+        # models (e.g. Pet) or oneOf
+        klass = PharmaObservatory.const_get(type)
+        klass.respond_to?(:openapi_any_of) || klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
+      end
+    end
+
+    # Returns the string representation of the object
+    # @return [String] String presentation of the object
+    def to_s
+      to_hash.to_s
+    end
+
+    # to_body is an alias to to_hash (backward compatibility)
+    # @return [Hash] Returns the object in the form of hash
+    def to_body
+      to_hash
+    end
+
+    # Returns the object in the form of hash
+    # @return [Hash] Returns the object in the form of hash
+    def to_hash
+      hash = {}
+      self.class.attribute_map.each_pair do |attr, param|
+        value = self.send(attr)
+        if value.nil?
+          is_nullable = self.class.openapi_nullable.include?(attr)
+          next if !is_nullable || (is_nullable && !instance_variable_defined?(:"@#{attr}"))
+        end
+
+        hash[param] = _to_hash(value)
+      end
+      hash
+    end
+
+    # Outputs non-array value in the form of hash
+    # For object, use to_hash. Otherwise, just return the value
+    # @param [Object] value Any valid value
+    # @return [Hash] Returns the value in the form of hash
+    def _to_hash(value)
+      if value.is_a?(Array)
+        value.compact.map { |v| _to_hash(v) }
+      elsif value.is_a?(Hash)
+        {}.tap do |hash|
+          value.each { |k, v| hash[k] = _to_hash(v) }
+        end
+      elsif value.respond_to? :to_hash
+        value.to_hash
+      else
+        value
+      end
+    end
+
+  end
+
+end

data/lib/pharmaobservatory/models/biomarkers_population_allele_frequency200_response_rows_inner.rb

@@ -0,0 +1,385 @@
+=begin
+#Pharma Observatory Public REST API
+
+#Read-only REST API over the Pharma Observatory biomedical data platform. Reference: https://pharmaobservatory.com/api-reference
+
+The version of the OpenAPI document: 1.0.0
+
+Generated by: https://openapi-generator.tech
+Generator version: 7.13.0
+
+=end
+
+require 'date'
+require 'time'
+
+module PharmaObservatory
+  class BiomarkersPopulationAlleleFrequency200ResponseRowsInner
+    attr_accessor :dna_change
+
+    attr_accessor :coverage_status
+
+    attr_accessor :gnomad_release
+
+    attr_accessor :filter_status
+
+    attr_accessor :abstain_reason
+
+    attr_accessor :population_code
+
+    attr_accessor :population
+
+    attr_accessor :allele_count
+
+    attr_accessor :allele_number
+
+    attr_accessor :allele_frequency
+
+    attr_accessor :homozygote_count
+
+    # Attribute mapping from ruby-style variable name to JSON key.
+    def self.attribute_map
+      {
+        :'dna_change' => :'dna_change',
+        :'coverage_status' => :'coverage_status',
+        :'gnomad_release' => :'gnomad_release',
+        :'filter_status' => :'filter_status',
+        :'abstain_reason' => :'abstain_reason',
+        :'population_code' => :'population_code',
+        :'population' => :'population',
+        :'allele_count' => :'allele_count',
+        :'allele_number' => :'allele_number',
+        :'allele_frequency' => :'allele_frequency',
+        :'homozygote_count' => :'homozygote_count'
+      }
+    end
+
+    # Returns attribute mapping this model knows about
+    def self.acceptable_attribute_map
+      attribute_map
+    end
+
+    # Returns all the JSON keys this model knows about
+    def self.acceptable_attributes
+      acceptable_attribute_map.values
+    end
+
+    # Attribute type mapping.
+    def self.openapi_types
+      {
+        :'dna_change' => :'String',
+        :'coverage_status' => :'String',
+        :'gnomad_release' => :'String',
+        :'filter_status' => :'Object',
+        :'abstain_reason' => :'Object',
+        :'population_code' => :'Object',
+        :'population' => :'Object',
+        :'allele_count' => :'Object',
+        :'allele_number' => :'Object',
+        :'allele_frequency' => :'Object',
+        :'homozygote_count' => :'Object'
+      }
+    end
+
+    # List of attributes with nullable: true
+    def self.openapi_nullable
+      Set.new([
+        :'filter_status',
+        :'abstain_reason',
+        :'population_code',
+        :'population',
+        :'allele_count',
+        :'allele_number',
+        :'allele_frequency',
+        :'homozygote_count'
+      ])
+    end
+
+    # Initializes the object
+    # @param [Hash] attributes Model attributes in the form of hash
+    def initialize(attributes = {})
+      if (!attributes.is_a?(Hash))
+        fail ArgumentError, "The input argument (attributes) must be a hash in `PharmaObservatory::BiomarkersPopulationAlleleFrequency200ResponseRowsInner` initialize method"
+      end
+
+      # check to see if the attribute exists and convert string to symbol for hash key
+      acceptable_attribute_map = self.class.acceptable_attribute_map
+      attributes = attributes.each_with_object({}) { |(k, v), h|
+        if (!acceptable_attribute_map.key?(k.to_sym))
+          fail ArgumentError, "`#{k}` is not a valid attribute in `PharmaObservatory::BiomarkersPopulationAlleleFrequency200ResponseRowsInner`. Please check the name to make sure it's valid. List of attributes: " + acceptable_attribute_map.keys.inspect
+        end
+        h[k.to_sym] = v
+      }
+
+      if attributes.key?(:'dna_change')
+        self.dna_change = attributes[:'dna_change']
+      else
+        self.dna_change = nil
+      end
+
+      if attributes.key?(:'coverage_status')
+        self.coverage_status = attributes[:'coverage_status']
+      else
+        self.coverage_status = nil
+      end
+
+      if attributes.key?(:'gnomad_release')
+        self.gnomad_release = attributes[:'gnomad_release']
+      else
+        self.gnomad_release = nil
+      end
+
+      if attributes.key?(:'filter_status')
+        self.filter_status = attributes[:'filter_status']
+      else
+        self.filter_status = nil
+      end
+
+      if attributes.key?(:'abstain_reason')
+        self.abstain_reason = attributes[:'abstain_reason']
+      else
+        self.abstain_reason = nil
+      end
+
+      if attributes.key?(:'population_code')
+        self.population_code = attributes[:'population_code']
+      else
+        self.population_code = nil
+      end
+
+      if attributes.key?(:'population')
+        self.population = attributes[:'population']
+      else
+        self.population = nil
+      end
+
+      if attributes.key?(:'allele_count')
+        self.allele_count = attributes[:'allele_count']
+      else
+        self.allele_count = nil
+      end
+
+      if attributes.key?(:'allele_number')
+        self.allele_number = attributes[:'allele_number']
+      else
+        self.allele_number = nil
+      end
+
+      if attributes.key?(:'allele_frequency')
+        self.allele_frequency = attributes[:'allele_frequency']
+      else
+        self.allele_frequency = nil
+      end
+
+      if attributes.key?(:'homozygote_count')
+        self.homozygote_count = attributes[:'homozygote_count']
+      else
+        self.homozygote_count = nil
+      end
+    end
+
+    # Show invalid properties with the reasons. Usually used together with valid?
+    # @return Array for valid properties with the reasons
+    def list_invalid_properties
+      warn '[DEPRECATED] the `list_invalid_properties` method is obsolete'
+      invalid_properties = Array.new
+      if @dna_change.nil?
+        invalid_properties.push('invalid value for "dna_change", dna_change cannot be nil.')
+      end
+
+      if @coverage_status.nil?
+        invalid_properties.push('invalid value for "coverage_status", coverage_status cannot be nil.')
+      end
+
+      if @gnomad_release.nil?
+        invalid_properties.push('invalid value for "gnomad_release", gnomad_release cannot be nil.')
+      end
+
+      invalid_properties
+    end
+
+    # Check to see if the all the properties in the model are valid
+    # @return true if the model is valid
+    def valid?
+      warn '[DEPRECATED] the `valid?` method is obsolete'
+      return false if @dna_change.nil?
+      return false if @coverage_status.nil?
+      return false if @gnomad_release.nil?
+      true
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] dna_change Value to be assigned
+    def dna_change=(dna_change)
+      if dna_change.nil?
+        fail ArgumentError, 'dna_change cannot be nil'
+      end
+
+      @dna_change = dna_change
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] coverage_status Value to be assigned
+    def coverage_status=(coverage_status)
+      if coverage_status.nil?
+        fail ArgumentError, 'coverage_status cannot be nil'
+      end
+
+      @coverage_status = coverage_status
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] gnomad_release Value to be assigned
+    def gnomad_release=(gnomad_release)
+      if gnomad_release.nil?
+        fail ArgumentError, 'gnomad_release cannot be nil'
+      end
+
+      @gnomad_release = gnomad_release
+    end
+
+    # Checks equality by comparing each attribute.
+    # @param [Object] Object to be compared
+    def ==(o)
+      return true if self.equal?(o)
+      self.class == o.class &&
+          dna_change == o.dna_change &&
+          coverage_status == o.coverage_status &&
+          gnomad_release == o.gnomad_release &&
+          filter_status == o.filter_status &&
+          abstain_reason == o.abstain_reason &&
+          population_code == o.population_code &&
+          population == o.population &&
+          allele_count == o.allele_count &&
+          allele_number == o.allele_number &&
+          allele_frequency == o.allele_frequency &&
+          homozygote_count == o.homozygote_count
+    end
+
+    # @see the `==` method
+    # @param [Object] Object to be compared
+    def eql?(o)
+      self == o
+    end
+
+    # Calculates hash code according to all attributes.
+    # @return [Integer] Hash code
+    def hash
+      [dna_change, coverage_status, gnomad_release, filter_status, abstain_reason, population_code, population, allele_count, allele_number, allele_frequency, homozygote_count].hash
+    end
+
+    # Builds the object from hash
+    # @param [Hash] attributes Model attributes in the form of hash
+    # @return [Object] Returns the model itself
+    def self.build_from_hash(attributes)
+      return nil unless attributes.is_a?(Hash)
+      attributes = attributes.transform_keys(&:to_sym)
+      transformed_hash = {}
+      openapi_types.each_pair do |key, type|
+        if attributes.key?(attribute_map[key]) && attributes[attribute_map[key]].nil?
+          transformed_hash["#{key}"] = nil
+        elsif type =~ /\AArray<(.*)>/i
+          # check to ensure the input is an array given that the attribute
+          # is documented as an array but the input is not
+          if attributes[attribute_map[key]].is_a?(Array)
+            transformed_hash["#{key}"] = attributes[attribute_map[key]].map { |v| _deserialize($1, v) }
+          end
+        elsif !attributes[attribute_map[key]].nil?
+          transformed_hash["#{key}"] = _deserialize(type, attributes[attribute_map[key]])
+        end
+      end
+      new(transformed_hash)
+    end
+
+    # Deserializes the data based on type
+    # @param string type Data type
+    # @param string value Value to be deserialized
+    # @return [Object] Deserialized data
+    def self._deserialize(type, value)
+      case type.to_sym
+      when :Time
+        Time.parse(value)
+      when :Date
+        Date.parse(value)
+      when :String
+        value.to_s
+      when :Integer
+        value.to_i
+      when :Float
+        value.to_f
+      when :Boolean
+        if value.to_s =~ /\A(true|t|yes|y|1)\z/i
+          true
+        else
+          false
+        end
+      when :Object
+        # generic object (usually a Hash), return directly
+        value
+      when /\AArray<(?<inner_type>.+)>\z/
+        inner_type = Regexp.last_match[:inner_type]
+        value.map { |v| _deserialize(inner_type, v) }
+      when /\AHash<(?<k_type>.+?), (?<v_type>.+)>\z/
+        k_type = Regexp.last_match[:k_type]
+        v_type = Regexp.last_match[:v_type]
+        {}.tap do |hash|
+          value.each do |k, v|
+            hash[_deserialize(k_type, k)] = _deserialize(v_type, v)
+          end
+        end
+      else # model
+        # models (e.g. Pet) or oneOf
+        klass = PharmaObservatory.const_get(type)
+        klass.respond_to?(:openapi_any_of) || klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
+      end
+    end
+
+    # Returns the string representation of the object
+    # @return [String] String presentation of the object
+    def to_s
+      to_hash.to_s
+    end
+
+    # to_body is an alias to to_hash (backward compatibility)
+    # @return [Hash] Returns the object in the form of hash
+    def to_body
+      to_hash
+    end
+
+    # Returns the object in the form of hash
+    # @return [Hash] Returns the object in the form of hash
+    def to_hash
+      hash = {}
+      self.class.attribute_map.each_pair do |attr, param|
+        value = self.send(attr)
+        if value.nil?
+          is_nullable = self.class.openapi_nullable.include?(attr)
+          next if !is_nullable || (is_nullable && !instance_variable_defined?(:"@#{attr}"))
+        end
+
+        hash[param] = _to_hash(value)
+      end
+      hash
+    end
+
+    # Outputs non-array value in the form of hash
+    # For object, use to_hash. Otherwise, just return the value
+    # @param [Object] value Any valid value
+    # @return [Hash] Returns the value in the form of hash
+    def _to_hash(value)
+      if value.is_a?(Array)
+        value.compact.map { |v| _to_hash(v) }
+      elsif value.is_a?(Hash)
+        {}.tap do |hash|
+          value.each { |k, v| hash[k] = _to_hash(v) }
+        end
+      elsif value.respond_to? :to_hash
+        value.to_hash
+      else
+        value
+      end
+    end
+
+  end
+
+end