pan_domain 0.1.0.rc1

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Files changed (65) hide show
  1. checksums.yaml +7 -0
  2. data/.gitignore +17 -0
  3. data/.rspec +3 -0
  4. data/Gemfile +6 -0
  5. data/Gemfile.lock +160 -0
  6. data/LICENSE.txt +21 -0
  7. data/README.md +74 -0
  8. data/Rakefile +21 -0
  9. data/app/models/pan_domain/human/blood_classification_system.rb +35 -0
  10. data/app/models/pan_domain/human/blood_group_name.rb +25 -0
  11. data/bin/console +14 -0
  12. data/bin/pan_domain +4 -0
  13. data/bin/rails +25 -0
  14. data/bin/setup +8 -0
  15. data/db/human_domain/seeds.rb +28 -0
  16. data/db/migrate/human_domain/0001_create_blood_classification_systems.rb +17 -0
  17. data/db/migrate/human_domain/0002_create_blood_group_names.rb +20 -0
  18. data/db/seeds.rb +21 -0
  19. data/lib/generators/human_domain/generate/migrations_generator.rb +49 -0
  20. data/lib/pan_domain.rb +6 -0
  21. data/lib/pan_domain/cli.rb +53 -0
  22. data/lib/pan_domain/engine.rb +5 -0
  23. data/lib/pan_domain/human/engine.rb +11 -0
  24. data/lib/pan_domain/version.rb +3 -0
  25. data/lib/tasks/human_domain.rake +45 -0
  26. data/lib/tasks/pan_domain.rake +23 -0
  27. data/pan_domain.gemspec +44 -0
  28. data/spec/lib/generators/test_generate_migrations_generator.rb +48 -0
  29. data/spec/lib/pan_domain/cli_spec.rb +53 -0
  30. data/spec/pan_domain_spec.rb +5 -0
  31. data/spec/sample_app/app/channels/application_cable/channel.rb +4 -0
  32. data/spec/sample_app/app/channels/application_cable/connection.rb +4 -0
  33. data/spec/sample_app/app/controllers/application_controller.rb +2 -0
  34. data/spec/sample_app/app/helpers/application_helper.rb +2 -0
  35. data/spec/sample_app/app/jobs/application_job.rb +2 -0
  36. data/spec/sample_app/app/mailers/application_mailer.rb +4 -0
  37. data/spec/sample_app/app/models/application_record.rb +3 -0
  38. data/spec/sample_app/config/application.rb +29 -0
  39. data/spec/sample_app/config/boot.rb +5 -0
  40. data/spec/sample_app/config/environment.rb +5 -0
  41. data/spec/sample_app/config/environments/development.rb +61 -0
  42. data/spec/sample_app/config/environments/production.rb +94 -0
  43. data/spec/sample_app/config/environments/test.rb +46 -0
  44. data/spec/sample_app/config/initializers/application_controller_renderer.rb +8 -0
  45. data/spec/sample_app/config/initializers/assets.rb +14 -0
  46. data/spec/sample_app/config/initializers/backtrace_silencers.rb +7 -0
  47. data/spec/sample_app/config/initializers/content_security_policy.rb +25 -0
  48. data/spec/sample_app/config/initializers/cookies_serializer.rb +5 -0
  49. data/spec/sample_app/config/initializers/filter_parameter_logging.rb +4 -0
  50. data/spec/sample_app/config/initializers/inflections.rb +16 -0
  51. data/spec/sample_app/config/initializers/mime_types.rb +4 -0
  52. data/spec/sample_app/config/initializers/wrap_parameters.rb +14 -0
  53. data/spec/sample_app/config/puma.rb +34 -0
  54. data/spec/sample_app/config/routes.rb +3 -0
  55. data/spec/sample_app/config/spring.rb +6 -0
  56. data/spec/sample_app/db/schema.rb +18 -0
  57. data/spec/sample_app/db/seeds.rb +1 -0
  58. data/spec/sample_app/spec/lib/tasks/human_domain_spec.rb +89 -0
  59. data/spec/sample_app/spec/lib/tasks/pan_domain_spec.rb +38 -0
  60. data/spec/sample_app/spec/models/pan_domain/human/blood_classification_system_spec.rb +46 -0
  61. data/spec/sample_app/spec/models/pan_domain/human/blood_group_name_spec.rb +39 -0
  62. data/spec/sample_app/spec/rails_helper.rb +98 -0
  63. data/spec/sample_app/spec/spec_helper.rb +96 -0
  64. data/spec/spec_helper.rb +97 -0
  65. metadata +244 -0
@@ -0,0 +1,2 @@
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+ class ApplicationJob < ActiveJob::Base
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+ end
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+ class ApplicationMailer < ActionMailer::Base
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+ default from: 'from@example.com'
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+ layout 'mailer'
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+ end
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+ class ApplicationRecord < ActiveRecord::Base
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+ self.abstract_class = true
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+ end
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+ require_relative 'boot'
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+
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+ require 'rails'
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+ # Pick the frameworks you want:
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+ require 'active_model/railtie'
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+ require 'active_job/railtie'
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+ require 'active_record/railtie'
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+ require 'active_storage/engine'
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+ require 'action_controller/railtie'
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+ require 'action_mailer/railtie'
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+ require 'action_view/railtie'
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+ require 'action_cable/engine'
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+ require 'sprockets/railtie'
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+ # require 'rails/test_unit/railtie'
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+
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+ Bundler.require(*Rails.groups)
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+ require 'pan_domain'
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+
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+ module SampleApp
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+ class Application < Rails::Application
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+ # Initialize configuration defaults for originally generated Rails version.
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+ config.load_defaults 5.2
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+
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+ # Settings in config/environments/* take precedence over those specified here.
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+ # Application configuration can go into files in config/initializers
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+ # -- all .rb files in that directory are automatically loaded after loading
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+ # the framework and any gems in your application.
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+ end
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+ end
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+ # Set up gems listed in the Gemfile.
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+ ENV['BUNDLE_GEMFILE'] ||= File.expand_path('../../../Gemfile', __dir__)
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+
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+ require 'bundler/setup' if File.exist?(ENV['BUNDLE_GEMFILE'])
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+ $LOAD_PATH.unshift File.expand_path('../../../lib', __dir__)
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+ # Load the Rails application.
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+ require_relative 'application'
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+
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+ # Initialize the Rails application.
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+ Rails.application.initialize!
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+ Rails.application.configure do
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+ # Settings specified here will take precedence over those in config/application.rb.
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+
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+ # In the development environment your application's code is reloaded on
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+ # every request. This slows down response time but is perfect for development
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+ # since you don't have to restart the web server when you make code changes.
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+ config.cache_classes = false
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+
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+ # Do not eager load code on boot.
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+ config.eager_load = false
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+
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+ # Show full error reports.
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+ config.consider_all_requests_local = true
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+
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+ # Enable/disable caching. By default caching is disabled.
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+ # Run rails dev:cache to toggle caching.
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+ if Rails.root.join('tmp', 'caching-dev.txt').exist?
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+ config.action_controller.perform_caching = true
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+
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+ config.cache_store = :memory_store
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+ config.public_file_server.headers = {
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+ 'Cache-Control' => "public, max-age=#{2.days.to_i}"
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+ }
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+ else
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+ config.action_controller.perform_caching = false
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+
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+ config.cache_store = :null_store
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+ end
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+
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+ # Store uploaded files on the local file system (see config/storage.yml for options)
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+ config.active_storage.service = :local
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+
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+ # Don't care if the mailer can't send.
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+ config.action_mailer.raise_delivery_errors = false
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+
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+ config.action_mailer.perform_caching = false
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+
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+ # Print deprecation notices to the Rails logger.
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+ config.active_support.deprecation = :log
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+
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+ # Raise an error on page load if there are pending migrations.
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+ config.active_record.migration_error = :page_load
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+
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+ # Highlight code that triggered database queries in logs.
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+ config.active_record.verbose_query_logs = true
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+
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+ # Debug mode disables concatenation and preprocessing of assets.
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+ # This option may cause significant delays in view rendering with a large
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+ # number of complex assets.
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+ config.assets.debug = true
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+
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+ # Suppress logger output for asset requests.
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+ config.assets.quiet = true
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+
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+ # Raises error for missing translations
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+ # config.action_view.raise_on_missing_translations = true
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+
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+ # Use an evented file watcher to asynchronously detect changes in source code,
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+ # routes, locales, etc. This feature depends on the listen gem.
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+ # config.file_watcher = ActiveSupport::EventedFileUpdateChecker
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+ end
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+ Rails.application.configure do
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+ # Settings specified here will take precedence over those in config/application.rb.
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+
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+ # Code is not reloaded between requests.
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+ config.cache_classes = true
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+
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+ # Eager load code on boot. This eager loads most of Rails and
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+ # your application in memory, allowing both threaded web servers
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+ # and those relying on copy on write to perform better.
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+ # Rake tasks automatically ignore this option for performance.
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+ config.eager_load = true
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+
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+ # Full error reports are disabled and caching is turned on.
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+ config.consider_all_requests_local = false
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+ config.action_controller.perform_caching = true
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+
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+ # Ensures that a master key has been made available in either ENV["RAILS_MASTER_KEY"]
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+ # or in config/master.key. This key is used to decrypt credentials (and other encrypted files).
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+ # config.require_master_key = true
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+
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+ # Disable serving static files from the `/public` folder by default since
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+ # Apache or NGINX already handles this.
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+ config.public_file_server.enabled = ENV['RAILS_SERVE_STATIC_FILES'].present?
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+
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+ # Compress JavaScripts and CSS.
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+ config.assets.js_compressor = :uglifier
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+ # config.assets.css_compressor = :sass
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+
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+ # Do not fallback to assets pipeline if a precompiled asset is missed.
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+ config.assets.compile = false
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+
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+ # `config.assets.precompile` and `config.assets.version` have moved to config/initializers/assets.rb
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+
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+ # Enable serving of images, stylesheets, and JavaScripts from an asset server.
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+ # config.action_controller.asset_host = 'http://assets.example.com'
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+
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+ # Specifies the header that your server uses for sending files.
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+ # config.action_dispatch.x_sendfile_header = 'X-Sendfile' # for Apache
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+ # config.action_dispatch.x_sendfile_header = 'X-Accel-Redirect' # for NGINX
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+
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+ # Store uploaded files on the local file system (see config/storage.yml for options)
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+ config.active_storage.service = :local
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+
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+ # Mount Action Cable outside main process or domain
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+ # config.action_cable.mount_path = nil
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+ # config.action_cable.url = 'wss://example.com/cable'
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+ # config.action_cable.allowed_request_origins = [ 'http://example.com', /http:\/\/example.*/ ]
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+
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+ # Force all access to the app over SSL, use Strict-Transport-Security, and use secure cookies.
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+ # config.force_ssl = true
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+
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+ # Use the lowest log level to ensure availability of diagnostic information
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+ # when problems arise.
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+ config.log_level = :debug
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+
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+ # Prepend all log lines with the following tags.
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+ config.log_tags = [ :request_id ]
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+
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+ # Use a different cache store in production.
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+ # config.cache_store = :mem_cache_store
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+
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+ # Use a real queuing backend for Active Job (and separate queues per environment)
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+ # config.active_job.queue_adapter = :resque
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+ # config.active_job.queue_name_prefix = "dummy_#{Rails.env}"
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+
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+ config.action_mailer.perform_caching = false
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+
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+ # Ignore bad email addresses and do not raise email delivery errors.
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+ # Set this to true and configure the email server for immediate delivery to raise delivery errors.
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+ # config.action_mailer.raise_delivery_errors = false
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+
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+ # Enable locale fallbacks for I18n (makes lookups for any locale fall back to
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+ # the I18n.default_locale when a translation cannot be found).
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+ config.i18n.fallbacks = true
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+
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+ # Send deprecation notices to registered listeners.
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+ config.active_support.deprecation = :notify
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+
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+ # Use default logging formatter so that PID and timestamp are not suppressed.
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+ config.log_formatter = ::Logger::Formatter.new
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+
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+ # Use a different logger for distributed setups.
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+ # require 'syslog/logger'
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+ # config.logger = ActiveSupport::TaggedLogging.new(Syslog::Logger.new 'app-name')
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+
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+ if ENV["RAILS_LOG_TO_STDOUT"].present?
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+ logger = ActiveSupport::Logger.new(STDOUT)
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+ logger.formatter = config.log_formatter
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+ config.logger = ActiveSupport::TaggedLogging.new(logger)
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+ end
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+
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+ # Do not dump schema after migrations.
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+ config.active_record.dump_schema_after_migration = false
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+ end
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+ Rails.application.configure do
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+ # Settings specified here will take precedence over those in config/application.rb.
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+
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+ # The test environment is used exclusively to run your application's
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+ # test suite. You never need to work with it otherwise. Remember that
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+ # your test database is "scratch space" for the test suite and is wiped
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+ # and recreated between test runs. Don't rely on the data there!
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+ config.cache_classes = true
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+
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+ # Do not eager load code on boot. This avoids loading your whole application
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+ # just for the purpose of running a single test. If you are using a tool that
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+ # preloads Rails for running tests, you may have to set it to true.
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+ config.eager_load = false
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+
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+ # Configure public file server for tests with Cache-Control for performance.
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+ config.public_file_server.enabled = true
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+ config.public_file_server.headers = {
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+ 'Cache-Control' => "public, max-age=#{1.hour.to_i}"
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+ }
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+
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+ # Show full error reports and disable caching.
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+ config.consider_all_requests_local = true
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+ config.action_controller.perform_caching = false
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+
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+ # Raise exceptions instead of rendering exception templates.
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+ config.action_dispatch.show_exceptions = false
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+
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+ # Disable request forgery protection in test environment.
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+ config.action_controller.allow_forgery_protection = false
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+
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+ # Store uploaded files on the local file system in a temporary directory
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+ config.active_storage.service = :test
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+
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+ config.action_mailer.perform_caching = false
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+
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+ # Tell Action Mailer not to deliver emails to the real world.
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+ # The :test delivery method accumulates sent emails in the
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+ # ActionMailer::Base.deliveries array.
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+ config.action_mailer.delivery_method = :test
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+
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+ # Print deprecation notices to the stderr.
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+ config.active_support.deprecation = :stderr
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+
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+ # Raises error for missing translations
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+ # config.action_view.raise_on_missing_translations = true
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+ end
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+ # Be sure to restart your server when you modify this file.
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+
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+ # ActiveSupport::Reloader.to_prepare do
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+ # ApplicationController.renderer.defaults.merge!(
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+ # http_host: 'example.org',
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+ # https: false
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+ # )
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+ # end
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+ # Be sure to restart your server when you modify this file.
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+
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+ # Version of your assets, change this if you want to expire all your assets.
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+ Rails.application.config.assets.version = '1.0'
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+
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+ # Add additional assets to the asset load path.
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+ # Rails.application.config.assets.paths << Emoji.images_path
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+ # Add Yarn node_modules folder to the asset load path.
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+ Rails.application.config.assets.paths << Rails.root.join('node_modules')
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+
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+ # Precompile additional assets.
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+ # application.js, application.css, and all non-JS/CSS in the app/assets
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+ # folder are already added.
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+ # Rails.application.config.assets.precompile += %w( admin.js admin.css )
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+ # Be sure to restart your server when you modify this file.
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+
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+ # You can add backtrace silencers for libraries that you're using but don't wish to see in your backtraces.
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+ # Rails.backtrace_cleaner.add_silencer { |line| line =~ /my_noisy_library/ }
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+
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+ # You can also remove all the silencers if you're trying to debug a problem that might stem from framework code.
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+ # Rails.backtrace_cleaner.remove_silencers!
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+ # Be sure to restart your server when you modify this file.
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+
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+ # Define an application-wide content security policy
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+ # For further information see the following documentation
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+ # https://developer.mozilla.org/en-US/docs/Web/HTTP/Headers/Content-Security-Policy
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+
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+ # Rails.application.config.content_security_policy do |policy|
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+ # policy.default_src :self, :https
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+ # policy.font_src :self, :https, :data
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+ # policy.img_src :self, :https, :data
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+ # policy.object_src :none
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+ # policy.script_src :self, :https
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+ # policy.style_src :self, :https
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+
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+ # # Specify URI for violation reports
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+ # # policy.report_uri "/csp-violation-report-endpoint"
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+ # end
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+
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+ # If you are using UJS then enable automatic nonce generation
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+ # Rails.application.config.content_security_policy_nonce_generator = -> request { SecureRandom.base64(16) }
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+
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+ # Report CSP violations to a specified URI
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+ # For further information see the following documentation:
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+ # https://developer.mozilla.org/en-US/docs/Web/HTTP/Headers/Content-Security-Policy-Report-Only
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+ # Rails.application.config.content_security_policy_report_only = true
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+ # Be sure to restart your server when you modify this file.
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+
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+ # Specify a serializer for the signed and encrypted cookie jars.
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+ # Valid options are :json, :marshal, and :hybrid.
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+ Rails.application.config.action_dispatch.cookies_serializer = :json
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+ # Be sure to restart your server when you modify this file.
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+
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+ # Configure sensitive parameters which will be filtered from the log file.
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+ Rails.application.config.filter_parameters += [:password]
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+ # Be sure to restart your server when you modify this file.
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+
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+ # Add new inflection rules using the following format. Inflections
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+ # are locale specific, and you may define rules for as many different
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+ # locales as you wish. All of these examples are active by default:
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+ # ActiveSupport::Inflector.inflections(:en) do |inflect|
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+ # inflect.plural /^(ox)$/i, '\1en'
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+ # inflect.singular /^(ox)en/i, '\1'
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+ # inflect.irregular 'person', 'people'
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+ # inflect.uncountable %w( fish sheep )
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+ # end
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+
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+ # These inflection rules are supported but not enabled by default:
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+ # ActiveSupport::Inflector.inflections(:en) do |inflect|
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+ # inflect.acronym 'RESTful'
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+ # end
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+ # Be sure to restart your server when you modify this file.
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+
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+ # Add new mime types for use in respond_to blocks:
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+ # Mime::Type.register "text/richtext", :rtf
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+ # Be sure to restart your server when you modify this file.
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+
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+ # This file contains settings for ActionController::ParamsWrapper which
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+ # is enabled by default.
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+
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+ # Enable parameter wrapping for JSON. You can disable this by setting :format to an empty array.
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+ ActiveSupport.on_load(:action_controller) do
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+ wrap_parameters format: [:json]
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+ end
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+
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+ # To enable root element in JSON for ActiveRecord objects.
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+ # ActiveSupport.on_load(:active_record) do
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+ # self.include_root_in_json = true
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+ # end
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+ # Puma can serve each request in a thread from an internal thread pool.
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+ # The `threads` method setting takes two numbers: a minimum and maximum.
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+ # Any libraries that use thread pools should be configured to match
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+ # the maximum value specified for Puma. Default is set to 5 threads for minimum
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+ # and maximum; this matches the default thread size of Active Record.
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+ #
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+ threads_count = ENV.fetch("RAILS_MAX_THREADS") { 5 }
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+ threads threads_count, threads_count
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+
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+ # Specifies the `port` that Puma will listen on to receive requests; default is 3000.
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+ #
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+ port ENV.fetch("PORT") { 3000 }
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+
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+ # Specifies the `environment` that Puma will run in.
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+ #
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+ environment ENV.fetch("RAILS_ENV") { "development" }
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+
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+ # Specifies the number of `workers` to boot in clustered mode.
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+ # Workers are forked webserver processes. If using threads and workers together
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+ # the concurrency of the application would be max `threads` * `workers`.
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+ # Workers do not work on JRuby or Windows (both of which do not support
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+ # processes).
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+ #
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+ # workers ENV.fetch("WEB_CONCURRENCY") { 2 }
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+
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+ # Use the `preload_app!` method when specifying a `workers` number.
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+ # This directive tells Puma to first boot the application and load code
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+ # before forking the application. This takes advantage of Copy On Write
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+ # process behavior so workers use less memory.
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+ #
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+ # preload_app!
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+
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+ # Allow puma to be restarted by `rails restart` command.
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+ plugin :tmp_restart
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+ Rails.application.routes.draw do
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+ # For details on the DSL available within this file, see http://guides.rubyonrails.org/routing.html
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+ end
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+ %w[
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+ .ruby-version
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+ .rbenv-vars
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+ tmp/restart.txt
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+ tmp/caching-dev.txt
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+ ].each { |path| Spring.watch(path) }
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+ # This file is auto-generated from the current state of the database. Instead
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+ # of editing this file, please use the migrations feature of Active Record to
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+ # incrementally modify your database, and then regenerate this schema definition.
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+ #
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+ # Note that this schema.rb definition is the authoritative source for your
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+ # database schema. If you need to create the application database on another
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+ # system, you should be using db:schema:load, not running all the migrations
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+ # from scratch. The latter is a flawed and unsustainable approach (the more migrations
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+ # you'll amass, the slower it'll run and the greater likelihood for issues).
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+ #
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+ # It's strongly recommended that you check this file into your version control system.
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+
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+ ActiveRecord::Schema.define(version: 0) do
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+
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+ # These are extensions that must be enabled in order to support this database
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+ enable_extension "plpgsql"
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+
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+ end
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+ PanDomain::Human::Engine.load_seed