osc_machete_rails 1.2.0

data/test/dummy/config/database.yml

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+# SQLite version 3.x
+#   gem install sqlite3
+#
+#   Ensure the SQLite 3 gem is defined in your Gemfile
+#   gem 'sqlite3'
+development:
+  adapter: sqlite3
+  database: db/development.sqlite3
+  pool: 5
+  timeout: 5000
+
+# Warning: The database defined as "test" will be erased and
+# re-generated from your development database when you run "rake".
+# Do not set this db to the same as development or production.
+test:
+  adapter: sqlite3
+  database: db/test.sqlite3
+  pool: 5
+  timeout: 5000
+
+production:
+  adapter: sqlite3
+  database: db/production.sqlite3
+  pool: 5
+  timeout: 5000

data/test/dummy/config/environment.rb

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+# Load the Rails application.
+require File.expand_path('../application', __FILE__)
+
+# Initialize the Rails application.
+Dummy::Application.initialize!

data/test/dummy/config/environments/development.rb

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+Dummy::Application.configure do
+  # Settings specified here will take precedence over those in config/application.rb.
+
+  # In the development environment your application's code is reloaded on
+  # every request. This slows down response time but is perfect for development
+  # since you don't have to restart the web server when you make code changes.
+  config.cache_classes = false
+
+  # Do not eager load code on boot.
+  config.eager_load = false
+
+  # Show full error reports and disable caching.
+  config.consider_all_requests_local       = true
+  config.action_controller.perform_caching = false
+
+  # Don't care if the mailer can't send.
+  config.action_mailer.raise_delivery_errors = false
+
+  # Print deprecation notices to the Rails logger.
+  config.active_support.deprecation = :log
+
+  # Raise an error on page load if there are pending migrations
+  config.active_record.migration_error = :page_load
+
+  # Debug mode disables concatenation and preprocessing of assets.
+  # This option may cause significant delays in view rendering with a large
+  # number of complex assets.
+  config.assets.debug = true
+end

data/test/dummy/config/environments/production.rb

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+Dummy::Application.configure do
+  # Settings specified here will take precedence over those in config/application.rb.
+
+  # Code is not reloaded between requests.
+  config.cache_classes = true
+
+  # Eager load code on boot. This eager loads most of Rails and
+  # your application in memory, allowing both thread web servers
+  # and those relying on copy on write to perform better.
+  # Rake tasks automatically ignore this option for performance.
+  config.eager_load = true
+
+  # Full error reports are disabled and caching is turned on.
+  config.consider_all_requests_local       = false
+  config.action_controller.perform_caching = true
+
+  # Enable Rack::Cache to put a simple HTTP cache in front of your application
+  # Add `rack-cache` to your Gemfile before enabling this.
+  # For large-scale production use, consider using a caching reverse proxy like nginx, varnish or squid.
+  # config.action_dispatch.rack_cache = true
+
+  # Disable Rails's static asset server (Apache or nginx will already do this).
+  config.serve_static_assets = false
+
+  # Compress JavaScripts and CSS.
+  config.assets.js_compressor = :uglifier
+  # config.assets.css_compressor = :sass
+
+  # Do not fallback to assets pipeline if a precompiled asset is missed.
+  config.assets.compile = false
+
+  # Generate digests for assets URLs.
+  config.assets.digest = true
+
+  # Version of your assets, change this if you want to expire all your assets.
+  config.assets.version = '1.0'
+
+  # Specifies the header that your server uses for sending files.
+  # config.action_dispatch.x_sendfile_header = "X-Sendfile" # for apache
+  # config.action_dispatch.x_sendfile_header = 'X-Accel-Redirect' # for nginx
+
+  # Force all access to the app over SSL, use Strict-Transport-Security, and use secure cookies.
+  # config.force_ssl = true
+
+  # Set to :debug to see everything in the log.
+  config.log_level = :info
+
+  # Prepend all log lines with the following tags.
+  # config.log_tags = [ :subdomain, :uuid ]
+
+  # Use a different logger for distributed setups.
+  # config.logger = ActiveSupport::TaggedLogging.new(SyslogLogger.new)
+
+  # Use a different cache store in production.
+  # config.cache_store = :mem_cache_store
+
+  # Enable serving of images, stylesheets, and JavaScripts from an asset server.
+  # config.action_controller.asset_host = "http://assets.example.com"
+
+  # Precompile additional assets.
+  # application.js, application.css, and all non-JS/CSS in app/assets folder are already added.
+  # config.assets.precompile += %w( search.js )
+
+  # Ignore bad email addresses and do not raise email delivery errors.
+  # Set this to true and configure the email server for immediate delivery to raise delivery errors.
+  # config.action_mailer.raise_delivery_errors = false
+
+  # Enable locale fallbacks for I18n (makes lookups for any locale fall back to
+  # the I18n.default_locale when a translation can not be found).
+  config.i18n.fallbacks = true
+
+  # Send deprecation notices to registered listeners.
+  config.active_support.deprecation = :notify
+
+  # Disable automatic flushing of the log to improve performance.
+  # config.autoflush_log = false
+
+  # Use default logging formatter so that PID and timestamp are not suppressed.
+  config.log_formatter = ::Logger::Formatter.new
+end

data/test/dummy/config/environments/test.rb

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+Dummy::Application.configure do
+  # Settings specified here will take precedence over those in config/application.rb.
+
+  # The test environment is used exclusively to run your application's
+  # test suite. You never need to work with it otherwise. Remember that
+  # your test database is "scratch space" for the test suite and is wiped
+  # and recreated between test runs. Don't rely on the data there!
+  config.cache_classes = true
+
+  # Do not eager load code on boot. This avoids loading your whole application
+  # just for the purpose of running a single test. If you are using a tool that
+  # preloads Rails for running tests, you may have to set it to true.
+  config.eager_load = false
+
+  # Configure static asset server for tests with Cache-Control for performance.
+  config.serve_static_assets  = true
+  config.static_cache_control = "public, max-age=3600"
+
+  # Show full error reports and disable caching.
+  config.consider_all_requests_local       = true
+  config.action_controller.perform_caching = false
+
+  # Raise exceptions instead of rendering exception templates.
+  config.action_dispatch.show_exceptions = false
+
+  # Disable request forgery protection in test environment.
+  config.action_controller.allow_forgery_protection = false
+
+  # Tell Action Mailer not to deliver emails to the real world.
+  # The :test delivery method accumulates sent emails in the
+  # ActionMailer::Base.deliveries array.
+  config.action_mailer.delivery_method = :test
+
+  # Print deprecation notices to the stderr.
+  config.active_support.deprecation = :stderr
+end

data/test/dummy/config/initializers/backtrace_silencers.rb

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+# Be sure to restart your server when you modify this file.
+
+# You can add backtrace silencers for libraries that you're using but don't wish to see in your backtraces.
+# Rails.backtrace_cleaner.add_silencer { |line| line =~ /my_noisy_library/ }
+
+# You can also remove all the silencers if you're trying to debug a problem that might stem from framework code.
+# Rails.backtrace_cleaner.remove_silencers!

data/test/dummy/config/initializers/filter_parameter_logging.rb

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+# Be sure to restart your server when you modify this file.
+
+# Configure sensitive parameters which will be filtered from the log file.
+Rails.application.config.filter_parameters += [:password]

data/test/dummy/config/initializers/inflections.rb

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+# Be sure to restart your server when you modify this file.
+
+# Add new inflection rules using the following format. Inflections
+# are locale specific, and you may define rules for as many different
+# locales as you wish. All of these examples are active by default:
+# ActiveSupport::Inflector.inflections(:en) do |inflect|
+#   inflect.plural /^(ox)$/i, '\1en'
+#   inflect.singular /^(ox)en/i, '\1'
+#   inflect.irregular 'person', 'people'
+#   inflect.uncountable %w( fish sheep )
+# end
+
+# These inflection rules are supported but not enabled by default:
+# ActiveSupport::Inflector.inflections(:en) do |inflect|
+#   inflect.acronym 'RESTful'
+# end

data/test/dummy/config/initializers/mime_types.rb

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+# Be sure to restart your server when you modify this file.
+
+# Add new mime types for use in respond_to blocks:
+# Mime::Type.register "text/richtext", :rtf
+# Mime::Type.register_alias "text/html", :iphone

data/test/dummy/config/initializers/secret_token.rb

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+# Be sure to restart your server when you modify this file.
+
+# Your secret key is used for verifying the integrity of signed cookies.
+# If you change this key, all old signed cookies will become invalid!
+
+# Make sure the secret is at least 30 characters and all random,
+# no regular words or you'll be exposed to dictionary attacks.
+# You can use `rake secret` to generate a secure secret key.
+
+# Make sure your secret_key_base is kept private
+# if you're sharing your code publicly.
+Dummy::Application.config.secret_key_base = '55f8b5b54e6ea16c93f074c1bbd170e560a77d1e3dd36dad84ae535f050b57d19396554b5f742f562c482213e3074159498b4812c04b02c0cd556f5eedec07e2'

data/test/dummy/config/initializers/session_store.rb

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+# Be sure to restart your server when you modify this file.
+
+Dummy::Application.config.session_store :cookie_store, key: '_dummy_session'

data/test/dummy/config/initializers/wrap_parameters.rb

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+# Be sure to restart your server when you modify this file.
+
+# This file contains settings for ActionController::ParamsWrapper which
+# is enabled by default.
+
+# Enable parameter wrapping for JSON. You can disable this by setting :format to an empty array.
+ActiveSupport.on_load(:action_controller) do
+  wrap_parameters format: [:json] if respond_to?(:wrap_parameters)
+end
+
+# To enable root element in JSON for ActiveRecord objects.
+# ActiveSupport.on_load(:active_record) do
+#  self.include_root_in_json = true
+# end

data/test/dummy/config/locales/en.yml

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+# Files in the config/locales directory are used for internationalization
+# and are automatically loaded by Rails. If you want to use locales other
+# than English, add the necessary files in this directory.
+#
+# To use the locales, use `I18n.t`:
+#
+#     I18n.t 'hello'
+#
+# In views, this is aliased to just `t`:
+#
+#     <%= t('hello') %>
+#
+# To use a different locale, set it with `I18n.locale`:
+#
+#     I18n.locale = :es
+#
+# This would use the information in config/locales/es.yml.
+#
+# To learn more, please read the Rails Internationalization guide
+# available at http://guides.rubyonrails.org/i18n.html.
+
+en:
+  hello: "Hello world"

data/test/dummy/config/routes.rb

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+Rails.application.routes.draw do
+
+  resources :simulations do
+    member do
+      put 'submit'
+      put 'copy'
+    end
+  end
+
+  mount OscMacheteRails::Engine => "/osc_machete_rails"
+end

data/test/dummy/config.ru

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+# This file is used by Rack-based servers to start the application.
+
+require ::File.expand_path('../config/environment',  __FILE__)
+run Rails.application

data/test/dummy/db/migrate/20151230193910_create_simulations.rb

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+class CreateSimulations < ActiveRecord::Migration
+  def change
+    create_table :simulations do |t|
+      t.string :name
+      t.float :pressure
+      t.string :staged_dir
+
+      t.timestamps
+    end
+  end
+end

data/test/dummy/db/migrate/20151230193911_create_simulation_jobs.rb

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+class CreateSimulationJobs < ActiveRecord::Migration
+  def change
+    create_table :simulation_jobs do |t|
+      t.string :name
+      t.float :pressure
+      t.references :simulation, index: true
+      t.string :status
+      t.string :pbsid
+      t.string :job_path
+      t.string :script_name
+
+      t.timestamps
+    end
+  end
+end

data/test/dummy/db/schema.rb

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+# encoding: UTF-8
+# This file is auto-generated from the current state of the database. Instead
+# of editing this file, please use the migrations feature of Active Record to
+# incrementally modify your database, and then regenerate this schema definition.
+#
+# Note that this schema.rb definition is the authoritative source for your
+# database schema. If you need to create the application database on another
+# system, you should be using db:schema:load, not running all the migrations
+# from scratch. The latter is a flawed and unsustainable approach (the more migrations
+# you'll amass, the slower it'll run and the greater likelihood for issues).
+#
+# It's strongly recommended that you check this file into your version control system.
+
+ActiveRecord::Schema.define(version: 20151230193911) do
+
+  create_table "simulation_jobs", force: true do |t|
+    t.string   "name"
+    t.float    "pressure"
+    t.integer  "simulation_id"
+    t.string   "status"
+    t.string   "pbsid"
+    t.string   "job_path"
+    t.string   "script_name"
+    t.datetime "created_at"
+    t.datetime "updated_at"
+  end
+
+  add_index "simulation_jobs", ["simulation_id"], name: "index_simulation_jobs_on_simulation_id"
+
+  create_table "simulations", force: true do |t|
+    t.string   "name"
+    t.float    "pressure"
+    t.string   "staged_dir"
+    t.datetime "created_at"
+    t.datetime "updated_at"
+  end
+
+end

data/test/dummy/jobs/simulation/main.sh.mustache

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+#PBS -N simulation
+#PBS -l nodes=1:ppn=12
+#PBS -l walltime=01:00:00
+#PBS -q @oak-batch.osc.edu
+#PBS -j oe
+#PBS -S /bin/bash
+
+echo "---Job started at:"
+date
+
+echo "name = {{{name}}}"
+echo "pressure = {{{pressure}}}"
+
+sleep 30
+
+echo "---Job finished at:"
+date