opentox-ruby-api-wrapper 1.1.0

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Files changed (21) hide show
  1. data/LICENSE +674 -0
  2. data/README.rdoc +23 -0
  3. data/Rakefile +64 -0
  4. data/VERSION +1 -0
  5. data/lib/algorithm.rb +37 -0
  6. data/lib/compound.rb +67 -0
  7. data/lib/dataset.rb +94 -0
  8. data/lib/environment.rb +33 -0
  9. data/lib/feature.rb +48 -0
  10. data/lib/helper.rb +26 -0
  11. data/lib/model.rb +71 -0
  12. data/lib/opentox-ruby-api-wrapper.rb +13 -0
  13. data/lib/opentox.rb +27 -0
  14. data/lib/spork.rb +81 -0
  15. data/lib/task.rb +55 -0
  16. data/lib/tasks/opentox.rb +135 -0
  17. data/lib/tasks/redis.rb +125 -0
  18. data/lib/templates/config.ru +23 -0
  19. data/lib/templates/config.yaml +10 -0
  20. data/lib/utils.rb +9 -0
  21. metadata +84 -0
data/lib/templates/config.yaml ADDED
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+ :base_dir: /home/ch/webservices
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+ :webserver: thin
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+ :services:
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+ # make sure to enter a full uri (including training slash)
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+ opentox-compound: "http://localhost:4000/"
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+ opentox-feature: "http://localhost:4001/"
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+ opentox-dataset: "http://localhost:4002/"
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+ opentox-algorithm: "http://localhost:4003/"
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+ opentox-model: "http://localhost:4004/"
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+ #opentox-task: "http://localhost:4005/"
data/lib/utils.rb ADDED
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+ module OpenTox
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+ module Utils
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+ # gauss kernel
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+ def self.gauss(sim, sigma = 0.3)
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+ x = 1.0 - sim
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+ Math.exp(-(x*x)/(2*sigma*sigma))
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+ end
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+ end
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+ end
metadata ADDED
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+ --- !ruby/object:Gem::Specification
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+ name: opentox-ruby-api-wrapper
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+ version: !ruby/object:Gem::Version
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+ version: 1.1.0
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+ platform: ruby
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+ authors:
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+ - Christoph Helma
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+ autorequire:
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+ bindir: bin
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+ cert_chain: []
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+
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+ date: 2009-10-06 00:00:00 +02:00
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+ default_executable:
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+ dependencies:
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+ - !ruby/object:Gem::Dependency
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+ name: technoweenie-rest-client
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+ type: :runtime
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+ version_requirement:
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: "0"
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+ version:
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+ description: Ruby wrapper for the OpenTox REST API (http://www.opentox.org)
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+ email: helma@in-silico.ch
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+ executables: []
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+
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+ extensions: []
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+
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+ extra_rdoc_files:
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+ - LICENSE
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+ - README.rdoc
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+ files:
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+ - LICENSE
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+ - README.rdoc
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+ - Rakefile
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+ - VERSION
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+ - lib/algorithm.rb
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+ - lib/compound.rb
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+ - lib/dataset.rb
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+ - lib/environment.rb
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+ - lib/feature.rb
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+ - lib/helper.rb
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+ - lib/model.rb
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+ - lib/opentox-ruby-api-wrapper.rb
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+ - lib/opentox.rb
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+ - lib/spork.rb
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+ - lib/task.rb
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+ - lib/tasks/opentox.rb
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+ - lib/tasks/redis.rb
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+ - lib/templates/config.ru
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+ - lib/templates/config.yaml
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+ - lib/utils.rb
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+ has_rdoc: true
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+ homepage: http://github.com/helma/opentox-ruby-api-wrapper
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+ licenses: []
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+
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+ post_install_message:
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+ rdoc_options:
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+ - --charset=UTF-8
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+ require_paths:
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+ - lib
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+ required_ruby_version: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: "0"
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+ version:
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+ required_rubygems_version: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: "0"
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+ version:
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+ requirements: []
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+
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+ rubyforge_project:
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+ rubygems_version: 1.3.5
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+ signing_key:
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+ specification_version: 3
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+ summary: Ruby wrapper for the OpenTox REST API
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+ test_files: []
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+