open_ehr 0.9.1 → 0.9.2

data/spec/lib/open_ehr/parser/adl14/adl-test-entry.c_dv_quantity_item_units_only.test.adl

@@ -0,0 +1,55 @@
+archetype
+	adl-test-ENTRY.c_dv_quantity.test
+
+concept
+	[at0000]
+
+language
+	original_language = <[ISO_639-1::en]> 
+	
+definition
+	ENTRY[at0000] matches {	
+        types matches {
+            LIST[at0001] matches {
+                items cardinality matches {0..*} matches {
+                    ELEMENT[at10005] matches {	-- c_quantity     
+	                    value matches {
+							C_DV_QUANTITY <
+								property = <[openehr::128]>
+								list = <									
+									["1"] = <
+										units = <"yr">
+									>
+									["2"] = <
+										units = <"mth">
+									>									
+								>
+							>
+						}
+                    }		
+                }
+            }
+        }
+	}
+
+ontology
+	primary_language = <"en">
+	languages_available = <"en", ...>
+	term_definitions = < 
+		["en"] = <
+			items = <
+				["at0000"] = <
+					text = <"domain types test">
+					description = <"domain types test">
+				>
+				["at0001"] = <
+					text = <"items">
+					description = <"items">
+				>
+				["at10005"] = <
+					text = <"c_quantity">
+					description = <"c_quantity node">
+				>				
+			>
+		>
+	>

data/spec/lib/open_ehr/parser/adl14/adl-test-entry.c_dv_quantity_list.test.adl

@@ -0,0 +1,58 @@
+archetype
+	adl-test-ENTRY.c_dv_quantity.test
+
+concept
+	[at0000]
+
+language
+	original_language = <[ISO_639-1::en]> 
+	
+definition
+	ENTRY[at0000] matches {	
+        types matches {
+            LIST[at0001] matches {
+                items cardinality matches {0..*} matches {
+                    ELEMENT[at10005] matches {	-- c_quantity     
+	                    value matches {
+							C_DV_QUANTITY <
+								list = <									
+									["1"] = <
+										units = <"yr">
+										magnitude = <|0.0..200.0|>
+										precision = <|2|>
+									>
+									["2"] = <
+										units = <"mth">
+										magnitude = <|1.0..36.0|>
+										precision = <|2|>
+									>									
+								>
+							>
+						}
+                    }		
+                }
+            }
+        }
+	}
+
+ontology
+	primary_language = <"en">
+	languages_available = <"en", ...>
+	term_definitions = < 
+		["en"] = <
+			items = <
+				["at0000"] = <
+					text = <"domain types test">
+					description = <"domain types test">
+				>
+				["at0001"] = <
+					text = <"items">
+					description = <"items">
+				>
+				["at10005"] = <
+					text = <"c_quantity">
+					description = <"c_quantity node">
+				>				
+			>
+		>
+	>

data/spec/lib/open_ehr/parser/adl14/adl-test-entry.c_dv_quantity_property.test.adl

@@ -0,0 +1,47 @@
+archetype
+	adl-test-ENTRY.c_dv_quantity.test
+
+concept
+	[at0000]
+
+language
+	original_language = <[ISO_639-1::en]>
+	
+definition
+	ENTRY[at0000] matches {	
+        types matches {
+            LIST[at0001] matches {
+                items cardinality matches {0..*} matches {
+                    ELEMENT[at10005] matches {	-- c_quantity     
+	                    value matches {
+							C_DV_QUANTITY <
+								property = <[openehr::128]>								
+							>
+						}
+                    }		
+                }
+            }
+        }
+	}
+
+ontology
+	primary_language = <"en">
+	languages_available = <"en", ...>
+	term_definitions = < 
+		["en"] = <
+			items = <
+				["at0000"] = <
+					text = <"domain types test">
+					description = <"domain types test">
+				>
+				["at0001"] = <
+					text = <"items">
+					description = <"items">
+				>
+				["at10005"] = <
+					text = <"c_quantity">
+					description = <"c_quantity node">
+				>				
+			>
+		>
+	>

data/spec/lib/open_ehr/parser/adl14/adl-test-entry.c_dv_quantity_reversed.test.adl

@@ -0,0 +1,59 @@
+archetype
+	adl-test-ENTRY.c_dv_quantity.test
+
+concept
+	[at0000]
+
+language
+	original_language = <[ISO_639-1::en]>
+	
+definition
+	ENTRY[at0000] matches {	
+        types matches {
+            LIST[at0001] matches {
+                items cardinality matches {0..*} matches {
+                    ELEMENT[at10005] matches {	-- c_quantity     
+	                    value matches {
+							C_DV_QUANTITY <
+								list = <									
+									["1"] = <
+										units = <"yr">
+										magnitude = <|0.0..200.0|>
+										precision = <|2|>
+									>
+									["2"] = <
+										units = <"mth">
+										magnitude = <|1.0..36.0|>
+										precision = <|2|>
+									>									
+								>
+								property = <[openehr::128]>								
+							>
+						}
+                    }		
+                }
+            }
+        }
+	}
+
+ontology
+	primary_language = <"en">
+	languages_available = <"en", ...>
+	term_definitions = < 
+		["en"] = <
+			items = <
+				["at0000"] = <
+					text = <"domain types test">
+					description = <"domain types test">
+				>
+				["at0001"] = <
+					text = <"items">
+					description = <"items">
+				>
+				["at10005"] = <
+					text = <"c_quantity">
+					description = <"c_quantity node">
+				>				
+			>
+		>
+	>

data/spec/lib/open_ehr/parser/adl14/adl-test-entry.constraint_binding.test.adl

@@ -0,0 +1,37 @@
+archetype
+	adl-test-ENTRY.constraint_binding.draft
+concept
+	[at0000]	--  empty definition test
+
+language
+	original_language = <[ISO_639-1::en]>
+	
+definition
+	ENTRY[at0000] matches {*}
+
+ontology
+	primary_language = <"en">
+	languages_available = <"en", ...>
+
+	term_definitions = <
+		["en"] = <
+			items = <
+				["at0000"] = <
+					text = <"most minimal">; 
+					description = <"most minimal">
+				>
+			>
+		>
+	>
+	constraint_binding = <
+		["SNOMED_CT"] = <
+			items = <
+				["ac0001"] = <http://terminology.org?terminology_id=snomed_ct&&has_relation=102002;with_target=128004>
+			>
+		>
+		["ICD10"] = <
+			items = <
+				["ac0001"] = <http://terminology.org?terminology_id=icd10&&has_relation=a2;with_target=b19>
+			>
+		>
+	>

data/spec/lib/open_ehr/parser/adl14/adl-test-entry.constraint_ref.test.adl

@@ -0,0 +1,43 @@
+archetype
+	adl-test-ENTRY.c_code_phrase.test
+
+concept
+	[at0000]
+
+language
+	original_language = <[ISO_639-1::en]>
+	
+definition
+	ENTRY[at0000] matches {	
+        content matches {
+            LIST[at0001] matches {
+                items cardinality matches {0..*} matches {
+                    ELEMENT[at0002] matches {
+                        value matches {
+                            DV_CODED_TEXT matches {
+                                defining_code matches {[ac0001]}
+                            } 
+                        }
+                    }	
+                }
+            }
+        }
+	}
+
+ontology
+	primary_language = <"en">
+	languages_available = <"en", ...>
+	term_definitions = < 
+		["en"] = <
+			items = <
+				["at0000"] = <
+					text = <"test">
+					description = <"desc">
+				>
+				["at0001"] = <
+					text = <"text">
+					description = <"desc">
+				>
+			>
+		>
+	>

data/spec/lib/open_ehr/parser/adl14/adl-test-entry.datetime.test.adl

@@ -0,0 +1,183 @@
+archetype 	
+	adl-test-ENTRY.test.draft
+
+concept 
+	[at0000]	--  basic data types test 1
+
+language
+	original_language = <[ISO_639-1::en]> 
+	
+definition
+	ENTRY[at0000] matches {
+	    date_attributes matches {
+            LIST matches {
+                date_attr1 matches {yyyy-mm-dd}
+                date_attr2 matches {yyyy-??-??}
+                date_attr3 matches {yyyy-mm-??}
+                date_attr4 matches {yyyy-??-XX}
+                date_attr5 matches {1983-12-25}
+                date_attr6 matches {2000-01-01}
+
+                date_attr7 matches {|2004-09-20..2004-10-20|}
+                date_attr8 matches {|< 2004-09-20|}
+                date_attr9 matches {|<= 2004-09-20|}
+                date_attr10 matches {|> 2004-09-20|}
+                date_attr11 matches {|>= 2004-09-20|}
+
+                -- date_attr12 matches {2001-12-25, ...} -- Not currently in ADL syntax
+                
+                -- with assumed values
+                date_attr13 matches {yyyy-mm-dd; 2000-01-01}
+                date_attr14 matches {yyyy-??-??; 2001-01-01}
+                date_attr15 matches {yyyy-mm-??; 2002-01-01}
+                date_attr16 matches {yyyy-??-XX; 2003-01-01}
+                date_attr17 matches {1983-12-25; 2004-01-01}
+                date_attr18 matches {2000-01-01; 2005-01-01}
+
+                date_attr19 matches {|2004-09-20..2004-10-20|; 2004-09-30}
+                date_attr20 matches {|< 2004-09-20|; 2004-09-01}
+                date_attr21 matches {|<= 2004-09-20|; 2003-09-20}
+                date_attr22 matches {|> 2004-09-20|; 2005-01-02}
+                date_attr23 matches {|>= 2004-09-20|; 2005-10-30}
+                
+                 -- single value as interval
+                 date_attr24 matches {|2004-09-20|}
+            }
+        }
+        time_attributes matches {
+            LIST matches {
+                time_attr1 matches {hh:mm:ss}
+                time_attr2 matches {hh:mm:XX}
+                time_attr3 matches {hh:??:XX}
+                time_attr4 matches {hh:??:??}
+                time_attr5 matches {22:00:05}
+                time_attr6 matches {00:00:59}
+
+                time_attr7  matches {12:35}
+                time_attr8  matches {12:35:45,666}
+                time_attr9  matches {12:35:45-0700}
+                time_attr10 matches {12:35:45+0800}
+                time_attr11 matches {12:35:45,999-0700}
+                time_attr12 matches {12:35:45,000+0800}
+                time_attr13 matches {12:35:45,000Z}
+                time_attr14 matches {12:35:45,995-0700}
+                time_attr15 matches {12:35:45,001+0800}
+
+                time_attr16  matches {|12:35..16:35|}
+                time_attr17  matches {|< 12:35|}
+                time_attr18  matches {|<= 12:35|}
+                time_attr19  matches {|> 12:35|}
+                time_attr20  matches {|>= 12:35|}
+                
+                -- with assumed values
+                time_attr21 matches {hh:mm:ss; 10:00:00}
+                time_attr22 matches {hh:mm:XX; 10:00:00}
+                time_attr23 matches {hh:??:XX; 10:00:00}
+                time_attr24 matches {hh:??:??; 10:00:00}
+                time_attr25 matches {22:00:05; 10:00:00}
+                time_attr26 matches {00:00:59; 10:00:00}
+
+                time_attr27  matches {12:35; 10:00:00}
+                time_attr28  matches {12:35:45,666; 10:00:00}
+                time_attr29  matches {12:35:45-0700; 10:00:00}
+                time_attr30 matches {12:35:45+0800; 10:00:00}
+                time_attr31 matches {12:35:45,999-0700; 10:00:00}
+                time_attr32 matches {12:35:45,000+0800; 10:00:00}
+                time_attr33 matches {12:35:45,000Z; 10:00:00}
+                time_attr34 matches {12:35:45,995-0700; 10:00:00}
+                time_attr35 matches {12:35:45,001+0800; 10:00:00}
+
+                time_attr36  matches {|12:35..16:35|; 10:00:00}
+                time_attr37  matches {|< 12:35|; 10:00:00}
+                time_attr38  matches {|<= 12:35|; 10:00:00}
+                time_attr39  matches {|> 12:35|; 10:00:00}
+                time_attr40  matches {|>= 12:35|; 10:00:00}
+
+				-- single value as interval
+				time_attr41  matches {|12:35|}
+				
+                -- time_attr7 matches {64:02:25, ...} -- Not currently in ADL syntax
+                
+                time_attr6 matches {00:00:59,0}
+            }
+        }
+        date_time_attributes matches {
+            LIST matches {
+                date_time_attr1 matches {yyyy-mm-dd hh:mm:ss}
+                date_time_attr2 matches {yyyy-mm-dd hh:mm:??}
+                date_time_attr3 matches {yyyy-mm-dd hh:mm:XX}
+                date_time_attr4 matches {yyyy-mm-dd hh:??:XX}
+                date_time_attr5 matches {yyyy-??-?? ??:??:??}
+                date_time_attr6 matches {1983-12-25T22:00:05}
+                date_time_attr7 matches {2000-01-01T00:00:59}
+
+                date_time_attr8 matches {2000-01-01T00:00:59}
+                date_time_attr9 matches {2000-01-01T00:00:59,105}
+                date_time_attr10 matches {2000-01-01T00:00:59Z}
+                date_time_attr11 matches {2000-01-01T00:00:59+1200}
+                date_time_attr12 matches {2000-01-01T00:00:59,500Z}
+                date_time_attr13 matches {2000-01-01T00:00:59,500+1200}
+                date_time_attr14 matches {2000-01-01T00:00:59,000Z}
+                date_time_attr15 matches {2000-01-01T00:00:59,000+1200}
+
+                date_time_attr16 matches {|2000-01-01T00:00:00..2000-01-02T00:00:00|}
+                date_time_attr17 matches {|< 2000-01-01T00:00:00|}
+                date_time_attr18 matches {|<= 2000-01-01T00:00:00|}
+                date_time_attr19 matches {|> 2000-01-01T00:00:00|}
+                date_time_attr20 matches {|>= 2000-01-01T00:00:00|}
+
+                -- date_time_attr8 matches {2000-12-25T00:00:59, ...} -- Not currently in ADL syntax
+                
+                -- with assumed values
+                date_time_attr1 matches {yyyy-mm-dd hh:mm:ss; 2006-03-31T01:12:00}
+                date_time_attr2 matches {yyyy-mm-dd hh:mm:??; 2006-03-31T01:12:00}
+                date_time_attr3 matches {yyyy-mm-dd hh:mm:XX; 2006-03-31T01:12:00}
+                date_time_attr4 matches {yyyy-mm-dd hh:??:XX; 2006-03-31T01:12:00}
+                date_time_attr5 matches {yyyy-??-?? ??:??:??; 2006-03-31T01:12:00}
+                date_time_attr6 matches {1983-12-25T22:00:05; 2006-03-31T01:12:00}
+                date_time_attr7 matches {2000-01-01T00:00:59; 2006-03-31T01:12:00}
+
+                date_time_attr8 matches {2000-01-01T00:00:59,000; 2006-03-31T01:12:00}
+                date_time_attr9 matches {2000-01-01T00:00:59,105; 2006-03-31T01:12:00}
+                date_time_attr10 matches {2000-01-01T00:00:59Z; 2006-03-31T01:12:00}
+                date_time_attr11 matches {2000-01-01T00:00:59+1200; 2006-03-31T01:12:00}
+                date_time_attr12 matches {2000-01-01T00:00:59,500Z; 2006-03-31T01:12:00}
+                date_time_attr13 matches {2000-01-01T00:00:59,500+1200; 2006-03-31T01:12:00}
+                date_time_attr14 matches {2000-01-01T00:00:59,000Z; 2006-03-31T01:12:00}
+                date_time_attr15 matches {2000-01-01T00:00:59,000+1200; 2006-03-31T01:12:00}
+
+                date_time_attr16 matches {|2000-01-01T00:00:00..2000-01-02T00:00:00|; 2006-03-31T01:12:00}
+                date_time_attr17 matches {|< 2000-01-01T00:00:00|; 2006-03-31T01:12:00}
+                date_time_attr18 matches {|<= 2000-01-01T00:00:00|; 2006-03-31T01:12:00}
+                date_time_attr19 matches {|> 2000-01-01T00:00:00|; 2006-03-31T01:12:00}
+                date_time_attr20 matches {|>= 2000-01-01T00:00:00|; 2006-03-31T01:12:00}
+                
+                -- newly supported pattern with "T" in the middle
+                date_time_attr21 matches {yyyy-??-??T??:??:??}
+                
+                -- single value as interval
+                date_time_attr22 matches {|2000-01-01T00:00:00|}
+                
+                -- datetime without specified seconds
+                date_time_attr23 matches {1995-03-17T12:01}
+                
+                -- datetime without specified minute or seconds
+                date_time_attr23 matches {1995-03-17T12}
+            }
+        }        
+    }
+ontology 
+	primary_language = <"en">
+	languages_available = <"en", ...>
+	terminologies_available = <"adl_test", ...>
+
+	term_definitions = <
+		["en"] = <
+			items = <
+				["at0000"] = <
+					text = <"test entry">; 
+					description = <"test entry">
+				>
+			>
+		>
+	>

data/spec/lib/open_ehr/parser/adl14/adl-test-entry.domain_types.test.adl

@@ -0,0 +1,97 @@
+archetype
+	adl-test-ENTRY.domain_types.test
+
+concept
+	[at0000]
+
+language
+	original_language = <[ISO_639-1::en]>
+	
+definition
+	ENTRY[at0000] matches {	
+        types matches {
+            LIST[at0001] matches {
+                items cardinality matches {0..*} matches {
+                    ELEMENT[at10001] matches {	-- ordinal
+                        value matches {
+                            0|[local::at0003.0], 	-- capsule
+                            1|[local::at0003.1], 	-- powder
+                            2|[local::at0003.2],  	-- tablet
+                            3|[local::at0003.3],  	-- solution
+                            4|[local::at0003.4]  	-- suspension
+                        }
+                    }
+                    ELEMENT[at10002] matches {	-- coded_text
+                        value matches {
+                            [local::
+                            at2001.0, 	-- initial
+                            at2001.1, 	-- wait
+                            at2001.2] 	-- completed
+                        }
+                    }
+                    
+                    -- not a domain type
+                    -- here for testing C_QUANTITY parsing
+                    
+                    ELEMENT[at10006] matches {	-- count     
+	                	value matches {
+							COUNT matches {
+								magnitude matches {|0..100|}
+							}
+						}
+					}	
+					
+					-- not a domain type
+					-- here for verifying a bug fix
+					
+					ELEMENT[at10006] matches {	-- count     
+	                	value matches {
+							COUNT matches {*}
+						}
+					}		
+                }
+            }
+        }
+	}
+
+ontology
+	primary_language = <"en">
+	languages_available = <"en", ...>
+	term_definitions = < 
+		["en"] = <
+			items = <
+				["at0000"] = <
+					text = <"domain types test">
+					description = <"domain types test">
+				>
+				["at0001"] = <
+					text = <"items">
+					description = <"items">
+				>
+				["at0002"] = <
+					text = <"*">
+					description = <"*">
+				>
+				["at0003.0"] = <
+					text = <"capsule">
+					description = <"">
+				>
+				["at0003.1"] = <
+					text = <"powder">
+					description = <"">
+				>
+				["at0003.2"] = <
+					text = <"tablet">
+					description = <"">
+				>
+				["at0003.3"] = <
+					text = <"solution">
+					description = <"">
+				>
+				["at0003.4"] = <
+					text = <"suspension">
+					description = <"">
+				>
+			>
+		>
+	>

data/spec/lib/open_ehr/parser/adl14/adl-test-entry.durations.test.adl

@@ -0,0 +1,111 @@
+archetype 	
+	adl-test-ENTRY.test.draft
+
+concept 
+	[at0000]	--  basic data types test 1
+
+language
+	original_language = <[ISO_639-1::en]>
+	
+definition
+	ENTRY[at0000] matches {	
+        types matches {
+            LIST[at0001] matches {
+                items cardinality matches {0..*} matches {
+                    ELEMENT[at1001] matches {	-- duration
+                		value matches {PT0s}
+                	}
+                	ELEMENT[at1002] matches {	-- duration
+                		value matches {P1d}
+                	}
+                	ELEMENT[at1003] matches {	-- duration
+                		value matches {PT2h5m0s}
+                	}
+                	ELEMENT[at1004] matches {	-- duration
+                		value matches {|PT1h55m0s..PT2h5m0s|}
+                	}
+                	ELEMENT[at1005] matches {	-- duration
+                		value matches {|<=PT1h|}
+                	}
+                	ELEMENT[at1006] matches {	-- duration
+                		value matches {P1DT1H2M3S}
+                	}
+                	ELEMENT[at1007] matches {	-- duration
+                		value matches {P1W2DT1H2M3S}
+                	}
+                	ELEMENT[at1008] matches {	-- duration
+                		value matches {P3M1W2DT1H2M3S}
+                	}
+                	ELEMENT[at1009] matches {	-- duration pattern
+                		value matches {PDTH}
+                	}
+                	ELEMENT[at1010] matches {	-- duration interval
+                		value matches {|PT10M|}
+                	}
+                	ELEMENT[at1011] matches {	-- duration ISO8601 pattern
+                		value matches {PYMWDTHMS} 
+                	}
+					ELEMENT[at1011] matches {	-- duration with fractional seconds
+                		value matches {|PT0.004s|}
+                	}
+					ELEMENT[at1012] matches {	-- duration with fractional seconds
+                		value matches {|PT10.01s|}
+                	}
+					ELEMENT[at1013] matches {	-- duration with fractional seconds
+                		value matches {|PT1.1s|}
+                	}
+                	ELEMENT[at1014] matches {	-- duration with mixed Pattern and Interval 
+						value matches {PTS/|PT0S..PT120S|}
+					}				
+                	-- matches {PT30s, PT45s, PT1m0s, PT2m0s} -- Not currently in ADL syntax
+                	-- matches {|P1d +/PT4h|}
+                }           	
+            }     	
+                	
+			LIST[at0002] matches {
+                items cardinality matches {0..*} matches {                		
+					ELEMENT[at1001] matches {	-- duration with assumed values
+                		value matches {PT0s; P1d}
+                	}
+                	ELEMENT[at1002] matches {	-- duration with assumed values
+                		value matches {P1d; P1d}
+                	}
+                	ELEMENT[at1003] matches {	-- duration with assumed values
+                		value matches {PT2h5m0s; P1d}
+                	}
+                	ELEMENT[at1004] matches {	-- duration with assumed values
+                		value matches {|PT1h55m0s..PT2h5m0s|; P1d}
+                	}
+                	ELEMENT[at1005] matches {	-- duration with assumed values
+                		value matches {|<=PT1h|; P1d}
+                	}
+                	ELEMENT[at1006] matches {	-- duration
+                		value matches {PDTH; P1d}
+                	}
+                	
+                	ELEMENT[at1010] matches {	-- duration interval
+                		value matches {|PT10M|; PT12M}
+                	}
+                }
+            }
+        }        
+    }
+ontology 
+	primary_language = <"en">
+	languages_available = <"en", ...>
+	terminologies_available = <"adl_test", ...>
+
+	term_definitions = <
+		["en"] = <
+			items = <
+				["at0000"] = <
+					text = <"test entry">; 
+					description = <"test entry">
+				>
+				["at0001"] = <
+					text = <"test list">; 
+					description = <"test list">
+				>
+			>
+		>
+	>