onc_certification_g10_test_kit 3.8.1 → 4.0.0

data/lib/onc_certification_g10_test_kit/profile_selector.rb

@@ -4,23 +4,23 @@ module ONCCertificationG10TestKit
   module ProfileSelector
     include G10Options
 
-    def extract_profile(profile)
-      case profile
+    def extract_profile(resource_type)
+      case resource_type
       when 'Medication'
         return versioned_us_core_module.const_get('USCoreTestSuite').metadata.find do |meta|
-                 meta.resource == profile
+                 meta.resource == resource_type
                end.profile_url
       when 'Location'
         return 'http://hl7.org/fhir/StructureDefinition/Location'
       end
-      versioned_us_core_module.const_get("#{profile}Group").metadata.profile_url
+      versioned_us_core_module.const_get("#{resource_type}Group").metadata.profile_url
     end
 
-    def observation_contains_code(observation_resource, code)
+    def observation_contains_code?(observation_resource, code)
       observation_resource&.code&.coding&.any? { |coding| coding&.code == code }
     end
 
-    def resource_contains_category(resource, category_code, category_system = nil) # rubocop:disable Metrics/CyclomaticComplexity
+    def resource_contains_category?(resource, category_code, category_system = nil) # rubocop:disable Metrics/CyclomaticComplexity
       resource&.category&.any? do |category|
         category.coding&.any? do |coding|
           coding.code == category_code &&
@@ -35,35 +35,35 @@ module ONCCertificationG10TestKit
       case resource.resourceType
       when 'Condition'
         case us_core_version
-        when US_CORE_5
-          if resource_contains_category(resource, 'encounter-diagnosis', 'http://terminology.hl7.org/CodeSystem/condition-category')
+        when US_CORE_5, US_CORE_6
+          if resource_contains_category?(resource, 'encounter-diagnosis', 'http://terminology.hl7.org/CodeSystem/condition-category')
             profiles << extract_profile('ConditionEncounterDiagnosis')
-          elsif resource_contains_category(resource, 'problem-list-item',
-                                           'http://terminology.hl7.org/CodeSystem/condition-category') ||
-                resource_contains_category(resource, 'health-concern', 'http://hl7.org/fhir/us/core/CodeSystem/condition-category')
+          elsif resource_contains_category?(resource, 'problem-list-item',
+                                            'http://terminology.hl7.org/CodeSystem/condition-category') ||
+                resource_contains_category?(resource, 'health-concern', 'http://hl7.org/fhir/us/core/CodeSystem/condition-category')
             profiles << extract_profile('ConditionProblemsHealthConcerns')
           end
         else
           profiles << extract_profile(resource.resourceType)
         end
       when 'DiagnosticReport'
-        profiles << if resource_contains_category(resource, 'LAB', 'http://terminology.hl7.org/CodeSystem/v2-0074')
+        profiles << if resource_contains_category?(resource, 'LAB', 'http://terminology.hl7.org/CodeSystem/v2-0074')
                       extract_profile('DiagnosticReportLab')
                     else
                       extract_profile('DiagnosticReportNote')
                     end
       when 'Observation'
-        profiles << extract_profile('Smokingstatus') if observation_contains_code(resource, '72166-2')
+        profiles << extract_profile('Smokingstatus') if observation_contains_code?(resource, '72166-2')
 
-        profiles << extract_profile('ObservationLab') if resource_contains_category(resource, 'laboratory', 'http://terminology.hl7.org/CodeSystem/observation-category')
+        profiles << extract_profile('ObservationLab') if resource_contains_category?(resource, 'laboratory', 'http://terminology.hl7.org/CodeSystem/observation-category')
 
-        profiles << extract_profile('PediatricBmiForAge') if observation_contains_code(resource, '59576-9')
+        profiles << extract_profile('PediatricBmiForAge') if observation_contains_code?(resource, '59576-9')
 
-        profiles << extract_profile('PediatricWeightForHeight') if observation_contains_code(resource, '77606-2')
+        profiles << extract_profile('PediatricWeightForHeight') if observation_contains_code?(resource, '77606-2')
 
-        profiles << extract_profile('PulseOximetry') if observation_contains_code(resource, '59408-5')
+        profiles << extract_profile('PulseOximetry') if observation_contains_code?(resource, '59408-5')
 
-        if observation_contains_code(resource, '8289-1')
+        if observation_contains_code?(resource, '8289-1')
           profiles << case us_core_version
                       when US_CORE_3
                         extract_profile('HeadCircumference')
@@ -72,7 +72,7 @@ module ONCCertificationG10TestKit
                       end
         end
 
-        if observation_contains_code(resource, '9843-4') && !using_us_core_3?
+        if observation_contains_code?(resource, '9843-4') && !using_us_core_3?
           profiles << extract_profile('HeadCircumference')
         end
 
@@ -81,9 +81,9 @@ module ONCCertificationG10TestKit
         # Body Mass Index is replaced by :pediatric_bmi_age Profile
         # Systolic Blood Pressure, Diastolic Blood Pressure are covered by :blood_pressure Profile
         # Head Circumference is replaced by US Core Head Occipital-frontal Circumference Percentile Profile
-        profiles << extract_profile('Bmi') if observation_contains_code(resource, '39156-5') && !using_us_core_3?
+        profiles << extract_profile('Bmi') if observation_contains_code?(resource, '39156-5') && !using_us_core_3?
 
-        if observation_contains_code(resource, '85354-9')
+        if observation_contains_code?(resource, '85354-9')
           profiles << case us_core_version
                       when US_CORE_3
                         extract_profile('Bp')
@@ -92,7 +92,7 @@ module ONCCertificationG10TestKit
                       end
         end
 
-        if observation_contains_code(resource, '8302-2')
+        if observation_contains_code?(resource, '8302-2')
           profiles << case us_core_version
                       when US_CORE_3
                         extract_profile('Bodyheight')
@@ -101,7 +101,7 @@ module ONCCertificationG10TestKit
                       end
         end
 
-        if observation_contains_code(resource, '8310-5')
+        if observation_contains_code?(resource, '8310-5')
           profiles << case us_core_version
                       when US_CORE_3
                         extract_profile('Bodytemp')
@@ -110,7 +110,7 @@ module ONCCertificationG10TestKit
                       end
         end
 
-        if observation_contains_code(resource, '29463-7')
+        if observation_contains_code?(resource, '29463-7')
           profiles << case us_core_version
                       when US_CORE_3
                         extract_profile('Bodyweight')
@@ -119,7 +119,7 @@ module ONCCertificationG10TestKit
                       end
         end
 
-        if observation_contains_code(resource, '8867-4')
+        if observation_contains_code?(resource, '8867-4')
           profiles << case us_core_version
                       when US_CORE_3
                         extract_profile('Heartrate')
@@ -128,7 +128,7 @@ module ONCCertificationG10TestKit
                       end
         end
 
-        if observation_contains_code(resource, '9279-1')
+        if observation_contains_code?(resource, '9279-1')
           profiles << case us_core_version
                       when US_CORE_3
                         extract_profile('Resprate')
@@ -138,44 +138,70 @@ module ONCCertificationG10TestKit
         end
 
         if using_us_core_5? &&
-           resource_contains_category(
+           resource_contains_category?(
              resource, 'clinical-test', 'http://hl7.org/fhir/us/core/CodeSystem/us-core-observation-category'
            )
           profiles << extract_profile('ObservationClinicalTest')
         end
 
-        if using_us_core_5? && observation_contains_code(resource, '76690-7')
+        if (using_us_core_5? || using_us_core_6?) && observation_contains_code?(resource, '76690-7')
           profiles << extract_profile('ObservationSexualOrientation')
         end
 
         if using_us_core_5? &&
-           resource_contains_category(resource, 'social-history',
-                                      'http://terminology.hl7.org/CodeSystem/observation-category')
+           resource_contains_category?(resource, 'social-history',
+                                       'http://terminology.hl7.org/CodeSystem/observation-category')
           profiles << extract_profile('ObservationSocialHistory')
         end
 
         if using_us_core_5? &&
-           resource_contains_category(resource, 'imaging',
-                                      'http://terminology.hl7.org/CodeSystem/observation-category')
+           resource_contains_category?(resource, 'imaging',
+                                       'http://terminology.hl7.org/CodeSystem/observation-category')
           profiles << extract_profile('ObservationImaging')
         end
 
-        # We will simply match all Observations of category "survey" to SDOH,
-        # and do not look at the category "sdoh".  US Core spec team says that
-        # support for the "sdoh" category is limited, and the validation rules
-        # allow for very generic surveys to validate against this profile.
-        # And will not validate against the ObservationSurvey profile itself.
-        # This may not be exactly precise but it works out the same
+        if resource_contains_category?(resource, 'survey',
+                                       'http://terminology.hl7.org/CodeSystem/observation-category')
+          if using_us_core_5?
+            # We will simply match all Observations of category "survey" to SDOH,
+            # and do not look at the category "sdoh".  US Core spec team says that
+            # support for the "sdoh" category is limited, and the validation rules
+            # allow for very generic surveys to validate against this profile.
+            # And will not validate against the ObservationSurvey profile itself.
+            # This may not be exactly precise but it works out the same
+
+            # if we wanted to be more specific here, we would add:
+            # `resource_contains_category?(resource, 'sdoh',
+            #                                       'http://terminology.hl7.org/CodeSystem/observation-category') &&`
+            # along with a specific extract_profile('ObservationSurvey') to catch non-sdoh.
+            profiles << extract_profile('ObservationSdohAssessment')
+          elsif using_us_core_6?
+            profiles << extract_profile('ObservationScreeningAssessment')
+          end
+        end
 
-        # if we wanted to be more specific here, we would add:
-        # `resource_contains_category(resource, 'sdoh',
-        #                                       'http://terminology.hl7.org/CodeSystem/observation-category') &&`
-        # along with a specific extract_profile('ObservationSurvey') to catch non-sdoh.
-        if using_us_core_5? &&
-           resource_contains_category(resource, 'survey',
-                                      'http://terminology.hl7.org/CodeSystem/observation-category')
+        if using_us_core_6? && observation_contains_code?(resource, '11341-5')
+          profiles << extract_profile('ObservationOccupation')
+        end
+
+        if using_us_core_6? && observation_contains_code?(resource, '86645-9')
+          profiles << extract_profile('ObservationPregnancyintent')
+        end
+
+        if using_us_core_6? && observation_contains_code?(resource, '82810-3')
+          profiles << extract_profile('ObservationPregnancystatus')
+        end
+
+        clinical_result_categories = [
+          'laboratory', 'exam', 'therpay', 'imaging', 'procedure', 'vital-signs', 'activity'
+        ]
 
-          profiles << extract_profile('ObservationSdohAssessment')
+        if using_us_core_6? && clinical_result_categories.any? do |category|
+             resource_contains_category?(
+               resource, category, 'http://terminology.hl7.org/CodeSystem/observation-category'
+             )
+           end
+          profiles << extract_profile('ObservationClinicalResult')
         end
 
         nil

data/lib/onc_certification_g10_test_kit/restricted_resource_type_access_group.rb

@@ -14,20 +14,25 @@ module ONCCertificationG10TestKit
 
       Resources that can be mapped to USCDI are checked in this test, including:
 
-        * AllergyIntolerance
-        * CarePlan
-        * CareTeam
-        * Condition
-        * Device
-        * DiagnosticReport
-        * DocumentReference
-        * Goal
-        * Immunization
-        * MedicationRequest
-        * Observation
-        * Procedure
-
-      If testing against USCDI v2, ServiceRequest is also checked.
+      * AllergyIntolerance
+      * CarePlan
+      * CareTeam
+      * Condition
+      * Device
+      * DiagnosticReport
+      * DocumentReference
+      * Goal
+      * Immunization
+      * MedicationRequest
+      * Observation
+      * Patient
+      * Procedure
+
+      If testing against USCDI v2, Encounter and ServiceRequest are also
+      checked.
+
+      If testing against USCDI v3, Encounter, ServiceRequest, Coverage,
+      and MedicationDispense are also checked.
 
       For each of the resources that can be mapped to USCDI data class or
       elements, this set of tests performs a minimum number of requests to
@@ -42,16 +47,28 @@ module ONCCertificationG10TestKit
       This set of tests does not attempt to access resources that do not
       directly map to USCDI. For USCDI v1 this includes:
 
-        * Encounter
-        * Location
-        * Organization
-        * Practitioner
+      * Encounter
+      * Location
+      * Organization
+      * Practitioner
 
       For USCDI v2 this includes:
 
-        * Location
-        * Organization
-        * Practitioner
+      * Location
+      * Organization
+      * Practitioner
+
+      For USCDI v3 this includes:
+
+      * Location
+      * Organization
+      * Practitioner
+      * RelatedPerson
+      * Specimen
+
+      It also does not test Provenance, as this resource type is accessed by
+      queries through other resource types. These resources types are accessed
+      in the more comprehensive Single Patient Query tests.
 
       If the tester chooses to not grant access to a resource, the queries
       associated with that resource must result in either a 401 (Unauthorized)
@@ -349,5 +366,85 @@ module ONCCertificationG10TestKit
         USCoreTestKit::USCoreV501::ServiceRequestGroup
       end
     end
+
+    test from: :g10_restricted_access_test do
+      title 'Access to Encounter resources are restricted properly based on patient-selected scope'
+      description %(
+        This test ensures that access to the Encounter is granted or
+        denied based on the selection by the tester prior to the execution of
+        the test. If the tester indicated that access will be granted to this
+        resource, this test verifies that a search by patient in this resource
+        does not result in an access denied result. If the tester indicated that
+        access will be denied for this resource, this verifies that search by
+        patient in the resource results in an access denied result.
+      )
+      id :g10_us_core_6_encounter_restricted_access
+
+      required_suite_options G10Options::US_CORE_6_REQUIREMENT
+
+      def resource_group
+        USCoreTestKit::USCoreV610::EncounterGroup
+      end
+    end
+
+    test from: :g10_restricted_access_test do
+      title 'Access to ServiceRequest resources are restricted properly based on patient-selected scope'
+      description %(
+        This test ensures that access to the ServiceRequest is granted or
+        denied based on the selection by the tester prior to the execution of
+        the test. If the tester indicated that access will be granted to this
+        resource, this test verifies that a search by patient in this resource
+        does not result in an access denied result. If the tester indicated that
+        access will be denied for this resource, this verifies that search by
+        patient in the resource results in an access denied result.
+      )
+      id :g10_us_core_6_service_request_restricted_access
+
+      required_suite_options G10Options::US_CORE_6_REQUIREMENT
+
+      def resource_group
+        USCoreTestKit::USCoreV610::ServiceRequestGroup
+      end
+    end
+
+    test from: :g10_restricted_access_test do
+      title 'Access to Coverage resources are restricted properly based on patient-selected scope'
+      description %(
+        This test ensures that access to the Coverage is granted or
+        denied based on the selection by the tester prior to the execution of
+        the test. If the tester indicated that access will be granted to this
+        resource, this test verifies that a search by patient in this resource
+        does not result in an access denied result. If the tester indicated that
+        access will be denied for this resource, this verifies that search by
+        patient in the resource results in an access denied result.
+      )
+      id :g10_us_core_6_coverage_restricted_access
+
+      required_suite_options G10Options::US_CORE_6_REQUIREMENT
+
+      def resource_group
+        USCoreTestKit::USCoreV610::CoverageGroup
+      end
+    end
+
+    test from: :g10_restricted_access_test do
+      title 'Access to MedicationDispense resources are restricted properly based on patient-selected scope'
+      description %(
+        This test ensures that access to the MedicationDispense is granted or
+        denied based on the selection by the tester prior to the execution of
+        the test. If the tester indicated that access will be granted to this
+        resource, this test verifies that a search by patient in this resource
+        does not result in an access denied result. If the tester indicated that
+        access will be denied for this resource, this verifies that search by
+        patient in the resource results in an access denied result.
+      )
+      id :g10_us_core_6_medication_dispense_restricted_access
+
+      required_suite_options G10Options::US_CORE_6_REQUIREMENT
+
+      def resource_group
+        USCoreTestKit::USCoreV610::MedicationDispenseGroup
+      end
+    end
   end
 end

data/lib/onc_certification_g10_test_kit/short_id_manager.rb

@@ -26,6 +26,8 @@ module ONCCertificationG10TestKit
         rescue KeyError
           Inferno::Application['logger'].warn("No short id defined for #{runnable.id}")
         end
+      rescue Errno::ENOENT
+        Inferno::Application['logger'].warn('No short id map found')
       end
 
       ### The methods below are only for creating an initial list of short ids