onc_certification_g10_test_kit 3.8.1 → 4.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/inferno/terminology/expected_manifest.yml +58 -53
- data/lib/inferno/terminology/fhir_package_manager.rb +2 -1
- data/lib/inferno/terminology/loader.rb +7 -3
- data/lib/inferno/terminology/tasks/check_built_terminology.rb +17 -1
- data/lib/inferno/terminology/tasks/download_fhir_terminology.rb +2 -1
- data/lib/inferno/terminology/tasks/download_umls.rb +2 -1
- data/lib/inferno/terminology/tasks/expand_value_set_to_file.rb +1 -1
- data/lib/inferno/terminology/tasks/run_umls_jar.rb +2 -1
- data/lib/onc_certification_g10_test_kit/bulk_data_group_export_validation.rb +185 -0
- data/lib/onc_certification_g10_test_kit/bulk_export_validation_tester.rb +4 -0
- data/lib/onc_certification_g10_test_kit/g10_options.rb +8 -0
- data/lib/onc_certification_g10_test_kit/igs/CodeSystem-observation-category.json +83 -0
- data/lib/onc_certification_g10_test_kit/igs/StructureDefinition-condition-assertedDate.json +280 -0
- data/lib/onc_certification_g10_test_kit/igs/ValueSet-observation-category.json +48 -0
- data/lib/onc_certification_g10_test_kit/igs/ValueSet-servicerequest-category.json +69 -0
- data/lib/onc_certification_g10_test_kit/limited_scope_grant_test.rb +5 -0
- data/lib/onc_certification_g10_test_kit/multi_patient_api_stu1.rb +10 -9
- data/lib/onc_certification_g10_test_kit/multi_patient_api_stu2.rb +10 -9
- data/lib/onc_certification_g10_test_kit/profile_selector.rb +72 -46
- data/lib/onc_certification_g10_test_kit/restricted_resource_type_access_group.rb +118 -21
- data/lib/onc_certification_g10_test_kit/short_id_manager.rb +2 -0
- data/lib/onc_certification_g10_test_kit/short_id_map.yml +579 -0
- data/lib/onc_certification_g10_test_kit/single_patient_api_group.rb +2 -1
- data/lib/onc_certification_g10_test_kit/single_patient_us_core_4_api_group.rb +33 -18
- data/lib/onc_certification_g10_test_kit/single_patient_us_core_5_api_group.rb +46 -24
- data/lib/onc_certification_g10_test_kit/single_patient_us_core_6_api_group.rb +203 -0
- data/lib/onc_certification_g10_test_kit/smart_scopes_test.rb +14 -4
- data/lib/onc_certification_g10_test_kit/unrestricted_resource_type_access_group.rb +106 -31
- data/lib/onc_certification_g10_test_kit/version.rb +1 -1
- data/lib/onc_certification_g10_test_kit/well_known_capabilities_test.rb +1 -1
- data/lib/onc_certification_g10_test_kit.rb +14 -1
- metadata +13 -8
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{
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"resourceType": "StructureDefinition",
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"id": "condition-assertedDate",
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"extension": [
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{
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"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
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"valueCode": "pc"
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},
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{
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"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
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"valueInteger": 1
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}
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],
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"url": "http://hl7.org/fhir/StructureDefinition/condition-assertedDate",
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"version": "4.0.1",
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"name": "assertedDate",
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"title": "assertedDate",
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"status": "draft",
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"date": "2015-02-21",
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"publisher": "Health Level Seven, Inc. - FHIR WG",
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"contact": [
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{
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"telecom": [
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{
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"system": "url",
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"value": "HL7"
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}
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]
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}
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],
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"description": "The date on which the existence of the Condition was first asserted or acknowledged.",
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"fhirVersion": "4.0.1",
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"mapping": [
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{
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"identity": "rim",
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"uri": "http://hl7.org/v3",
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"name": "RIM Mapping"
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}
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],
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"kind": "complex-type",
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"abstract": false,
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"context": [
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{
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"type": "element",
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"expression": "Condition"
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}
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],
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"type": "Extension",
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"baseDefinition": "http://hl7.org/fhir/StructureDefinition/Extension",
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"derivation": "constraint",
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"snapshot": {
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"element": [
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{
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"id": "Extension",
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"path": "Extension",
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"short": "Date the condition was first asserted",
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"definition": "The date on which the existence of the Condition was first asserted or acknowledged.",
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"comment": "The assertedDate is in the context of the recording practitioner and might not be the same as the recordedDate.",
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"min": 0,
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"max": "1",
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"base": {
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"path": "Extension",
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"min": 0,
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"max": "*"
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"condition": [
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"ele-1"
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],
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"constraint": [
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{
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"key": "ele-1",
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"severity": "error",
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"human": "All FHIR elements must have a @value or children",
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"expression": "hasValue() or (children().count() > id.count())",
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"xpath": "@value|f:*|h:div",
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"source": "http://hl7.org/fhir/StructureDefinition/Element"
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},
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{
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"key": "ext-1",
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"severity": "error",
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"human": "Must have either extensions or value[x], not both",
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"expression": "extension.exists() != value.exists()",
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"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), 'value')])",
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"source": "http://hl7.org/fhir/StructureDefinition/Extension"
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}
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],
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"isModifier": false
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},
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{
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"id": "Extension.id",
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"path": "Extension.id",
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"representation": [
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"xmlAttr"
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],
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"short": "Unique id for inter-element referencing",
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"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
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"min": 0,
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"max": "1",
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"base": {
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"path": "Element.id",
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"min": 0,
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"max": "1"
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},
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"type": [
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"extension": [
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{
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"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
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"valueUrl": "string"
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}
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],
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"code": "http://hl7.org/fhirpath/System.String"
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}
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],
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"isModifier": false,
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"isSummary": false,
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"mapping": [
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{
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"identity": "rim",
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"map": "n/a"
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}
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]
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{
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"id": "Extension.extension",
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"path": "Extension.extension",
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"slicing": {
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"discriminator": [
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"type": "value",
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"path": "url"
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],
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"description": "Extensions are always sliced by (at least) url",
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"rules": "open"
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},
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"short": "Extension",
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"definition": "An Extension",
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"min": 0,
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"max": "0",
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"base": {
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"path": "Element.extension",
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"min": 0,
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"max": "*"
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"type": [
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"code": "Extension"
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],
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"constraint": [
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{
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"key": "ele-1",
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"severity": "error",
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"human": "All FHIR elements must have a @value or children",
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"expression": "hasValue() or (children().count() > id.count())",
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"xpath": "@value|f:*|h:div",
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"source": "http://hl7.org/fhir/StructureDefinition/Element"
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},
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{
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"key": "ext-1",
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"severity": "error",
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"human": "Must have either extensions or value[x], not both",
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"expression": "extension.exists() != value.exists()",
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"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
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"source": "http://hl7.org/fhir/StructureDefinition/Extension"
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}
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],
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"isModifier": false,
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"isSummary": false
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},
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"id": "Extension.url",
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"path": "Extension.url",
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"representation": [
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"xmlAttr"
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],
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"short": "identifies the meaning of the extension",
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"definition": "Source of the definition for the extension code - a logical name or a URL.",
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"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
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"min": 1,
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"max": "1",
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"base": {
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"path": "Extension.url",
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"min": 1,
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"max": "1"
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"type": [
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"extension": [
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"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
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"valueUrl": "uri"
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}
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],
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"code": "http://hl7.org/fhirpath/System.String"
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}
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],
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"fixedUri": "http://hl7.org/fhir/StructureDefinition/condition-assertedDate",
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"isModifier": false,
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"isSummary": false,
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"mapping": [
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"identity": "rim",
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"map": "N/A"
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"id": "Extension.value[x]",
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"path": "Extension.value[x]",
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"short": "Value of extension",
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"definition": "Value of extension - must be one of a constrained set of the data types (see [Extensibility](http://hl7.org/fhir/extensibility.html) for a list).",
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"min": 1,
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"max": "1",
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"base": {
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"path": "Extension.value[x]",
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"min": 0,
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"max": "1"
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"type": [
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"code": "dateTime"
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"constraint": [
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{
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"key": "ele-1",
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"severity": "error",
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"human": "All FHIR elements must have a @value or children",
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"expression": "hasValue() or (children().count() > id.count())",
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"xpath": "@value|f:*|h:div",
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"source": "http://hl7.org/fhir/StructureDefinition/Element"
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}
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],
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"isModifier": false,
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"isSummary": false,
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"mapping": [
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"identity": "rim",
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"map": "N/A"
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]
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}
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]
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},
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"differential": {
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"element": [
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{
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"id": "Extension",
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"path": "Extension",
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"short": "Date the condition was first asserted",
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"definition": "The date on which the existence of the Condition was first asserted or acknowledged.",
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"comment": "The assertedDate is in the context of the recording practitioner and might not be the same as the recordedDate.",
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"min": 0,
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"max": "1"
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},
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"id": "Extension.extension",
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"path": "Extension.extension",
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"max": "0"
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},
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{
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"id": "Extension.url",
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"path": "Extension.url",
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"fixedUri": "http://hl7.org/fhir/StructureDefinition/condition-assertedDate"
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"id": "Extension.value[x]",
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"path": "Extension.value[x]",
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"min": 1,
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"type": [
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"code": "dateTime"
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}
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]
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}
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}
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{
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"resourceType" : "ValueSet",
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"id" : "observation-category",
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"meta" : {
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"lastUpdated" : "2019-11-01T09:29:23.356+11:00",
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"profile" : ["http://hl7.org/fhir/StructureDefinition/shareablevalueset"]
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},
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"text" : {
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"status" : "generated",
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"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><h2>Observation Category Codes</h2><div><p>Observation Category codes.</p>\n</div><p>This value set includes codes from the following code systems:</p><ul><li>Include all codes defined in <a href=\"codesystem-observation-category.html\"><code>http://terminology.hl7.org/CodeSystem/observation-category</code></a></li></ul></div>"
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"extension" : [{
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"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
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"valueCode" : "oo"
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},
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{
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"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
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"valueCode" : "draft"
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},
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{
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"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
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"valueInteger" : 1
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}],
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"url" : "http://hl7.org/fhir/ValueSet/observation-category",
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"identifier" : [{
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"system" : "urn:ietf:rfc:3986",
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"value" : "urn:oid:2.16.840.1.113883.4.642.3.403"
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}],
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"version" : "4.0.1",
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"name" : "ObservationCategoryCodes",
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"title" : "Observation Category Codes",
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"status" : "draft",
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"experimental" : false,
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"date" : "2019-11-01T09:29:23+11:00",
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"publisher" : "FHIR Project team",
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"contact" : [{
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"telecom" : [{
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"system" : "url",
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"value" : "http://hl7.org/fhir"
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}]
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}],
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"description" : "Observation Category codes.",
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"compose" : {
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"include" : [{
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"system" : "http://terminology.hl7.org/CodeSystem/observation-category"
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}]
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}
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}
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{
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"resourceType" : "ValueSet",
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"id" : "servicerequest-category",
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"meta" : {
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"lastUpdated" : "2019-11-01T09:29:23.356+11:00",
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"profile" : ["http://hl7.org/fhir/StructureDefinition/shareablevalueset"]
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},
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"text" : {
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"status" : "generated",
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"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><h2>Service Request Category Codes</h2><div><p>An example value set of SNOMED CT concepts that can classify a requested service</p>\n</div><p><b>Copyright Statement:</b></p><div><p>This specification includes content from SNOMED Clinical Terms® (SNOMED CT®) which is copyright of the International Health Terminology Standards Development Organisation (IHTSDO). Implementers of these specifications must have the appropriate SNOMED CT Affiliate license - for more information contact http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org.</p>\n</div><p>This value set includes codes from the following code systems:</p><ul><li>Include these codes as defined in <a href=\"http://www.snomed.org/\"><code>http://snomed.info/sct</code></a><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td><a href=\"http://browser.ihtsdotools.org/?perspective=full&conceptId1=108252007\">108252007</a></td><td>Laboratory procedure</td><td/></tr><tr><td><a href=\"http://browser.ihtsdotools.org/?perspective=full&conceptId1=363679005\">363679005</a></td><td>Imaging</td><td/></tr><tr><td><a href=\"http://browser.ihtsdotools.org/?perspective=full&conceptId1=409063005\">409063005</a></td><td>Counselling</td><td/></tr><tr><td><a href=\"http://browser.ihtsdotools.org/?perspective=full&conceptId1=409073007\">409073007</a></td><td>Education</td><td/></tr><tr><td><a href=\"http://browser.ihtsdotools.org/?perspective=full&conceptId1=387713003\">387713003</a></td><td>Surgical procedure</td><td/></tr></table></li></ul></div>"
|
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},
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"extension" : [{
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"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
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"valueCode" : "oo"
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},
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{
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"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
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"valueCode" : "draft"
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},
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{
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"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
|
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"valueInteger" : 1
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}],
|
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"url" : "http://hl7.org/fhir/ValueSet/servicerequest-category",
|
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"identifier" : [{
|
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"system" : "urn:ietf:rfc:3986",
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"value" : "urn:oid:2.16.840.1.113883.4.642.3.434"
|
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}],
|
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"version" : "4.0.1",
|
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"name" : "ServiceRequestCategoryCodes",
|
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"title" : "Service Request Category Codes",
|
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"status" : "draft",
|
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"experimental" : false,
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"date" : "2019-11-01T09:29:23+11:00",
|
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"publisher" : "Orders and Observations Workgroup",
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"contact" : [{
|
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"telecom" : [{
|
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"system" : "url",
|
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"value" : "http://www.hl7.org/Special/committees/orders/index.cfm"
|
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}]
|
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}],
|
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"description" : "An example value set of SNOMED CT concepts that can classify a requested service",
|
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"copyright" : "This specification includes content from SNOMED Clinical Terms® (SNOMED CT®) which is copyright of the International Health Terminology Standards Development Organisation (IHTSDO). Implementers of these specifications must have the appropriate SNOMED CT Affiliate license - for more information contact http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org.",
|
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"compose" : {
|
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"include" : [{
|
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"system" : "http://snomed.info/sct",
|
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"concept" : [{
|
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"code" : "108252007",
|
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"display" : "Laboratory procedure"
|
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},
|
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{
|
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"code" : "363679005",
|
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"display" : "Imaging"
|
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},
|
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{
|
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"code" : "409063005",
|
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"display" : "Counselling"
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},
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{
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"code" : "409073007",
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"display" : "Education"
|
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},
|
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{
|
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"code" : "387713003",
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"display" : "Surgical procedure"
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}]
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}]
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}
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}
|
@@ -34,9 +34,14 @@ module ONCCertificationG10TestKit
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V5_POSSIBLE_RESOURCES =
|
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(POSSIBLE_RESOURCES + ['Encounter', 'ServiceRequest']).freeze
|
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V6_POSSIBLE_RESOURCES =
|
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(V5_POSSIBLE_RESOURCES + ['Specimen', 'Coverage', 'MedicationDispense']).freeze
|
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def possible_resources
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return V5_POSSIBLE_RESOURCES if using_us_core_5?
|
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return V6_POSSIBLE_RESOURCES if using_us_core_6?
|
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|
POSSIBLE_RESOURCES
|
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end
|
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@@ -21,19 +21,20 @@ module ONCCertificationG10TestKit
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)
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description %(
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-
Demonstrate the ability to export clinical data for multiple patients in
|
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-
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-
IG](http://hl7.org/fhir/uv/bulkdata/STU1.0.1/). This test uses [Backend
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Demonstrate the ability to export clinical data for multiple patients in a
|
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group using [FHIR Bulk Data Access
|
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IG](http://hl7.org/fhir/uv/bulkdata/STU1.0.1/). This test uses [Backend
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Services
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Authorization](http://hl7.org/fhir/uv/bulkdata/STU1.0.1/authorization/index.html)
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to obtain an access token from the server. After authorization, a group
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level bulk data export request is initialized. Finally, this test reads
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exported NDJSON files from the server and validates the resources in
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-
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exported NDJSON files from the server and validates the resources in each
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file. To run the test successfully, the selected group export is required
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to have resources conforming to every profile mapped to [USCDI data
|
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elements](https://www.healthit.gov/isa/us-core-data-interoperability-uscdi).
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Additionally, it is expected the server will provide Encounter,
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Additionally, it is expected the server will provide Encounter, Location,
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Organization, and Practitioner resources as they are referenced as must
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support elements in required resources.
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)
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id :multi_patient_api
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run_as_group
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@@ -21,19 +21,20 @@ module ONCCertificationG10TestKit
|
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)
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description %(
|
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-
Demonstrate the ability to export clinical data for multiple patients in
|
25
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-
|
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|
-
IG](https://hl7.org/fhir/uv/bulkdata/STU2/). This test uses [Backend
|
24
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+
Demonstrate the ability to export clinical data for multiple patients in a
|
25
|
+
group using [FHIR Bulk Data Access
|
26
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+
IG](https://hl7.org/fhir/uv/bulkdata/STU2/). This test uses [Backend
|
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+
Services
|
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28
|
Authorization](http://www.hl7.org/fhir/smart-app-launch/backend-services.html)
|
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to obtain an access token from the server. After authorization, a group
|
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|
level bulk data export request is initialized. Finally, this test reads
|
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-
exported NDJSON files from the server and validates the resources in
|
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-
|
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-
|
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+
exported NDJSON files from the server and validates the resources in each
|
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+
file. To run the test successfully, the selected group export is required
|
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+
to have resources conforming to every profile mapped to [USCDI data
|
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elements](https://www.healthit.gov/isa/us-core-data-interoperability-uscdi).
|
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-
Additionally, it is expected the server will provide Encounter,
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-
|
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-
|
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+
Additionally, it is expected the server will provide Encounter, Location,
|
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Organization, and Practitioner resources as they are referenced as must
|
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+
support elements in required resources.
|
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)
|
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id :multi_patient_api_stu2
|
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run_as_group
|