onc_certification_g10_test_kit 3.8.1 → 4.0.0
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- checksums.yaml +4 -4
- data/lib/inferno/terminology/expected_manifest.yml +58 -53
- data/lib/inferno/terminology/fhir_package_manager.rb +2 -1
- data/lib/inferno/terminology/loader.rb +7 -3
- data/lib/inferno/terminology/tasks/check_built_terminology.rb +17 -1
- data/lib/inferno/terminology/tasks/download_fhir_terminology.rb +2 -1
- data/lib/inferno/terminology/tasks/download_umls.rb +2 -1
- data/lib/inferno/terminology/tasks/expand_value_set_to_file.rb +1 -1
- data/lib/inferno/terminology/tasks/run_umls_jar.rb +2 -1
- data/lib/onc_certification_g10_test_kit/bulk_data_group_export_validation.rb +185 -0
- data/lib/onc_certification_g10_test_kit/bulk_export_validation_tester.rb +4 -0
- data/lib/onc_certification_g10_test_kit/g10_options.rb +8 -0
- data/lib/onc_certification_g10_test_kit/igs/CodeSystem-observation-category.json +83 -0
- data/lib/onc_certification_g10_test_kit/igs/StructureDefinition-condition-assertedDate.json +280 -0
- data/lib/onc_certification_g10_test_kit/igs/ValueSet-observation-category.json +48 -0
- data/lib/onc_certification_g10_test_kit/igs/ValueSet-servicerequest-category.json +69 -0
- data/lib/onc_certification_g10_test_kit/limited_scope_grant_test.rb +5 -0
- data/lib/onc_certification_g10_test_kit/multi_patient_api_stu1.rb +10 -9
- data/lib/onc_certification_g10_test_kit/multi_patient_api_stu2.rb +10 -9
- data/lib/onc_certification_g10_test_kit/profile_selector.rb +72 -46
- data/lib/onc_certification_g10_test_kit/restricted_resource_type_access_group.rb +118 -21
- data/lib/onc_certification_g10_test_kit/short_id_manager.rb +2 -0
- data/lib/onc_certification_g10_test_kit/short_id_map.yml +579 -0
- data/lib/onc_certification_g10_test_kit/single_patient_api_group.rb +2 -1
- data/lib/onc_certification_g10_test_kit/single_patient_us_core_4_api_group.rb +33 -18
- data/lib/onc_certification_g10_test_kit/single_patient_us_core_5_api_group.rb +46 -24
- data/lib/onc_certification_g10_test_kit/single_patient_us_core_6_api_group.rb +203 -0
- data/lib/onc_certification_g10_test_kit/smart_scopes_test.rb +14 -4
- data/lib/onc_certification_g10_test_kit/unrestricted_resource_type_access_group.rb +106 -31
- data/lib/onc_certification_g10_test_kit/version.rb +1 -1
- data/lib/onc_certification_g10_test_kit/well_known_capabilities_test.rb +1 -1
- data/lib/onc_certification_g10_test_kit.rb +14 -1
- metadata +13 -8
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{
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"resourceType": "StructureDefinition",
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"id": "condition-assertedDate",
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"extension": [
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{
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"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
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"valueCode": "pc"
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{
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"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
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"valueInteger": 1
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}
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],
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"url": "http://hl7.org/fhir/StructureDefinition/condition-assertedDate",
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"version": "4.0.1",
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"name": "assertedDate",
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"title": "assertedDate",
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"status": "draft",
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"date": "2015-02-21",
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"publisher": "Health Level Seven, Inc. - FHIR WG",
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"contact": [
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{
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"telecom": [
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{
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"system": "url",
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"value": "HL7"
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}
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]
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],
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"description": "The date on which the existence of the Condition was first asserted or acknowledged.",
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"fhirVersion": "4.0.1",
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"mapping": [
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{
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"identity": "rim",
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"uri": "http://hl7.org/v3",
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"name": "RIM Mapping"
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}
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],
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"kind": "complex-type",
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"abstract": false,
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"context": [
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{
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"type": "element",
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"expression": "Condition"
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}
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],
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"type": "Extension",
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"baseDefinition": "http://hl7.org/fhir/StructureDefinition/Extension",
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"derivation": "constraint",
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"snapshot": {
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"element": [
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{
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"id": "Extension",
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"path": "Extension",
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"short": "Date the condition was first asserted",
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"definition": "The date on which the existence of the Condition was first asserted or acknowledged.",
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"comment": "The assertedDate is in the context of the recording practitioner and might not be the same as the recordedDate.",
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"min": 0,
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"max": "1",
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"base": {
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"path": "Extension",
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"min": 0,
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"max": "*"
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},
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"condition": [
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"ele-1"
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],
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"constraint": [
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{
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"key": "ele-1",
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"severity": "error",
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"human": "All FHIR elements must have a @value or children",
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"expression": "hasValue() or (children().count() > id.count())",
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"xpath": "@value|f:*|h:div",
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"source": "http://hl7.org/fhir/StructureDefinition/Element"
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},
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{
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"key": "ext-1",
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"severity": "error",
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"human": "Must have either extensions or value[x], not both",
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"expression": "extension.exists() != value.exists()",
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"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), 'value')])",
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"source": "http://hl7.org/fhir/StructureDefinition/Extension"
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}
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],
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"isModifier": false
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},
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{
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"id": "Extension.id",
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"path": "Extension.id",
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"representation": [
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"xmlAttr"
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],
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"short": "Unique id for inter-element referencing",
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"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
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"min": 0,
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"max": "1",
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"base": {
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"path": "Element.id",
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"min": 0,
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"max": "1"
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},
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"type": [
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{
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"extension": [
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{
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"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
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"valueUrl": "string"
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}
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],
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"code": "http://hl7.org/fhirpath/System.String"
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}
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],
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"isModifier": false,
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"isSummary": false,
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"mapping": [
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{
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"identity": "rim",
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"map": "n/a"
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{
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"id": "Extension.extension",
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"path": "Extension.extension",
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"slicing": {
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"discriminator": [
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{
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"type": "value",
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"path": "url"
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}
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],
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"description": "Extensions are always sliced by (at least) url",
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"rules": "open"
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},
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"short": "Extension",
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"definition": "An Extension",
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"min": 0,
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"max": "0",
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"base": {
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"path": "Element.extension",
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"min": 0,
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"max": "*"
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},
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"type": [
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{
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"code": "Extension"
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],
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"constraint": [
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{
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"key": "ele-1",
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"severity": "error",
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"human": "All FHIR elements must have a @value or children",
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"expression": "hasValue() or (children().count() > id.count())",
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"xpath": "@value|f:*|h:div",
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"source": "http://hl7.org/fhir/StructureDefinition/Element"
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},
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{
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"key": "ext-1",
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"severity": "error",
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"human": "Must have either extensions or value[x], not both",
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"expression": "extension.exists() != value.exists()",
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"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
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"source": "http://hl7.org/fhir/StructureDefinition/Extension"
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}
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],
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"isModifier": false,
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"isSummary": false
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},
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{
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"id": "Extension.url",
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"path": "Extension.url",
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"representation": [
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"xmlAttr"
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],
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"short": "identifies the meaning of the extension",
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"definition": "Source of the definition for the extension code - a logical name or a URL.",
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"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
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"min": 1,
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"max": "1",
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"base": {
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"path": "Extension.url",
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"min": 1,
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"max": "1"
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},
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"type": [
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{
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"extension": [
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{
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"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
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"valueUrl": "uri"
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}
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],
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"code": "http://hl7.org/fhirpath/System.String"
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}
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],
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"fixedUri": "http://hl7.org/fhir/StructureDefinition/condition-assertedDate",
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"isModifier": false,
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"isSummary": false,
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"mapping": [
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{
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"identity": "rim",
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"map": "N/A"
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{
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"id": "Extension.value[x]",
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"path": "Extension.value[x]",
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"short": "Value of extension",
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"definition": "Value of extension - must be one of a constrained set of the data types (see [Extensibility](http://hl7.org/fhir/extensibility.html) for a list).",
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"min": 1,
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"max": "1",
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"base": {
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"path": "Extension.value[x]",
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"min": 0,
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"max": "1"
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},
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"type": [
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{
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"code": "dateTime"
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],
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"constraint": [
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{
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"key": "ele-1",
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"severity": "error",
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"human": "All FHIR elements must have a @value or children",
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"expression": "hasValue() or (children().count() > id.count())",
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"xpath": "@value|f:*|h:div",
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"source": "http://hl7.org/fhir/StructureDefinition/Element"
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}
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],
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"isModifier": false,
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"isSummary": false,
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"mapping": [
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{
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"identity": "rim",
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"map": "N/A"
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}
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]
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}
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]
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},
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"differential": {
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"element": [
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{
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"id": "Extension",
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"path": "Extension",
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"short": "Date the condition was first asserted",
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"definition": "The date on which the existence of the Condition was first asserted or acknowledged.",
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"comment": "The assertedDate is in the context of the recording practitioner and might not be the same as the recordedDate.",
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"min": 0,
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"max": "1"
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},
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{
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"id": "Extension.extension",
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"path": "Extension.extension",
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"max": "0"
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},
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{
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"id": "Extension.url",
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"path": "Extension.url",
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"fixedUri": "http://hl7.org/fhir/StructureDefinition/condition-assertedDate"
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},
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{
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"id": "Extension.value[x]",
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"path": "Extension.value[x]",
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"min": 1,
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"type": [
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{
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"code": "dateTime"
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}
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]
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}
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]
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}
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}
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@@ -0,0 +1,48 @@
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{
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"resourceType" : "ValueSet",
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"id" : "observation-category",
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"meta" : {
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"lastUpdated" : "2019-11-01T09:29:23.356+11:00",
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"profile" : ["http://hl7.org/fhir/StructureDefinition/shareablevalueset"]
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},
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"text" : {
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"status" : "generated",
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"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><h2>Observation Category Codes</h2><div><p>Observation Category codes.</p>\n</div><p>This value set includes codes from the following code systems:</p><ul><li>Include all codes defined in <a href=\"codesystem-observation-category.html\"><code>http://terminology.hl7.org/CodeSystem/observation-category</code></a></li></ul></div>"
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},
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"extension" : [{
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"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
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"valueCode" : "oo"
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},
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{
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"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
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"valueCode" : "draft"
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},
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{
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"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
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"valueInteger" : 1
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}],
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"url" : "http://hl7.org/fhir/ValueSet/observation-category",
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"identifier" : [{
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"system" : "urn:ietf:rfc:3986",
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"value" : "urn:oid:2.16.840.1.113883.4.642.3.403"
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}],
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"version" : "4.0.1",
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"name" : "ObservationCategoryCodes",
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"title" : "Observation Category Codes",
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"status" : "draft",
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"experimental" : false,
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"date" : "2019-11-01T09:29:23+11:00",
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"publisher" : "FHIR Project team",
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"contact" : [{
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"telecom" : [{
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"system" : "url",
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"value" : "http://hl7.org/fhir"
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}]
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}],
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"description" : "Observation Category codes.",
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"compose" : {
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"include" : [{
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"system" : "http://terminology.hl7.org/CodeSystem/observation-category"
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}]
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}
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}
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{
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"resourceType" : "ValueSet",
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"id" : "servicerequest-category",
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"meta" : {
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"lastUpdated" : "2019-11-01T09:29:23.356+11:00",
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"profile" : ["http://hl7.org/fhir/StructureDefinition/shareablevalueset"]
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},
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"text" : {
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"status" : "generated",
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"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><h2>Service Request Category Codes</h2><div><p>An example value set of SNOMED CT concepts that can classify a requested service</p>\n</div><p><b>Copyright Statement:</b></p><div><p>This specification includes content from SNOMED Clinical Terms® (SNOMED CT®) which is copyright of the International Health Terminology Standards Development Organisation (IHTSDO). Implementers of these specifications must have the appropriate SNOMED CT Affiliate license - for more information contact http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org.</p>\n</div><p>This value set includes codes from the following code systems:</p><ul><li>Include these codes as defined in <a href=\"http://www.snomed.org/\"><code>http://snomed.info/sct</code></a><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td><a href=\"http://browser.ihtsdotools.org/?perspective=full&conceptId1=108252007\">108252007</a></td><td>Laboratory procedure</td><td/></tr><tr><td><a href=\"http://browser.ihtsdotools.org/?perspective=full&conceptId1=363679005\">363679005</a></td><td>Imaging</td><td/></tr><tr><td><a href=\"http://browser.ihtsdotools.org/?perspective=full&conceptId1=409063005\">409063005</a></td><td>Counselling</td><td/></tr><tr><td><a href=\"http://browser.ihtsdotools.org/?perspective=full&conceptId1=409073007\">409073007</a></td><td>Education</td><td/></tr><tr><td><a href=\"http://browser.ihtsdotools.org/?perspective=full&conceptId1=387713003\">387713003</a></td><td>Surgical procedure</td><td/></tr></table></li></ul></div>"
|
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},
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"extension" : [{
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"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
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"valueCode" : "oo"
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},
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{
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"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
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"valueCode" : "draft"
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},
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{
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"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
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"valueInteger" : 1
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}],
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"url" : "http://hl7.org/fhir/ValueSet/servicerequest-category",
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"identifier" : [{
|
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"system" : "urn:ietf:rfc:3986",
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"value" : "urn:oid:2.16.840.1.113883.4.642.3.434"
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}],
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"version" : "4.0.1",
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"name" : "ServiceRequestCategoryCodes",
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"title" : "Service Request Category Codes",
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"status" : "draft",
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"experimental" : false,
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"date" : "2019-11-01T09:29:23+11:00",
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"publisher" : "Orders and Observations Workgroup",
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"contact" : [{
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"telecom" : [{
|
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"system" : "url",
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"value" : "http://www.hl7.org/Special/committees/orders/index.cfm"
|
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}]
|
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}],
|
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"description" : "An example value set of SNOMED CT concepts that can classify a requested service",
|
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"copyright" : "This specification includes content from SNOMED Clinical Terms® (SNOMED CT®) which is copyright of the International Health Terminology Standards Development Organisation (IHTSDO). Implementers of these specifications must have the appropriate SNOMED CT Affiliate license - for more information contact http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org.",
|
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"compose" : {
|
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"include" : [{
|
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"system" : "http://snomed.info/sct",
|
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"concept" : [{
|
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"code" : "108252007",
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"display" : "Laboratory procedure"
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},
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{
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"code" : "363679005",
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"display" : "Imaging"
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},
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{
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"code" : "409063005",
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"display" : "Counselling"
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},
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{
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"code" : "409073007",
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"display" : "Education"
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},
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{
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"code" : "387713003",
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"display" : "Surgical procedure"
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}]
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}]
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}
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}
|
@@ -34,9 +34,14 @@ module ONCCertificationG10TestKit
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V5_POSSIBLE_RESOURCES =
|
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(POSSIBLE_RESOURCES + ['Encounter', 'ServiceRequest']).freeze
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V6_POSSIBLE_RESOURCES =
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(V5_POSSIBLE_RESOURCES + ['Specimen', 'Coverage', 'MedicationDispense']).freeze
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def possible_resources
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return V5_POSSIBLE_RESOURCES if using_us_core_5?
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return V6_POSSIBLE_RESOURCES if using_us_core_6?
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POSSIBLE_RESOURCES
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end
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@@ -21,19 +21,20 @@ module ONCCertificationG10TestKit
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)
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description %(
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-
Demonstrate the ability to export clinical data for multiple patients in
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-
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-
IG](http://hl7.org/fhir/uv/bulkdata/STU1.0.1/). This test uses [Backend
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Demonstrate the ability to export clinical data for multiple patients in a
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group using [FHIR Bulk Data Access
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IG](http://hl7.org/fhir/uv/bulkdata/STU1.0.1/). This test uses [Backend
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Services
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Authorization](http://hl7.org/fhir/uv/bulkdata/STU1.0.1/authorization/index.html)
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to obtain an access token from the server. After authorization, a group
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level bulk data export request is initialized. Finally, this test reads
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exported NDJSON files from the server and validates the resources in
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exported NDJSON files from the server and validates the resources in each
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file. To run the test successfully, the selected group export is required
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to have resources conforming to every profile mapped to [USCDI data
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elements](https://www.healthit.gov/isa/us-core-data-interoperability-uscdi).
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Additionally, it is expected the server will provide Encounter,
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Additionally, it is expected the server will provide Encounter, Location,
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Organization, and Practitioner resources as they are referenced as must
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support elements in required resources.
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)
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id :multi_patient_api
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run_as_group
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@@ -21,19 +21,20 @@ module ONCCertificationG10TestKit
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)
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description %(
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-
Demonstrate the ability to export clinical data for multiple patients in
|
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-
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-
IG](https://hl7.org/fhir/uv/bulkdata/STU2/). This test uses [Backend
|
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+
Demonstrate the ability to export clinical data for multiple patients in a
|
25
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+
group using [FHIR Bulk Data Access
|
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+
IG](https://hl7.org/fhir/uv/bulkdata/STU2/). This test uses [Backend
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Services
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|
Authorization](http://www.hl7.org/fhir/smart-app-launch/backend-services.html)
|
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to obtain an access token from the server. After authorization, a group
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level bulk data export request is initialized. Finally, this test reads
|
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-
exported NDJSON files from the server and validates the resources in
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-
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-
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+
exported NDJSON files from the server and validates the resources in each
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file. To run the test successfully, the selected group export is required
|
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+
to have resources conforming to every profile mapped to [USCDI data
|
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elements](https://www.healthit.gov/isa/us-core-data-interoperability-uscdi).
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-
Additionally, it is expected the server will provide Encounter,
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-
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-
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Additionally, it is expected the server will provide Encounter, Location,
|
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Organization, and Practitioner resources as they are referenced as must
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support elements in required resources.
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)
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id :multi_patient_api_stu2
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run_as_group
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