oddb2xml 1.8.1 → 1.8.2
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- data/.travis.yml +1 -1
- data/Gemfile.lock +7 -7
- data/README.md +14 -2
- data/Rakefile +10 -1
- data/bin/oddb2xml +2 -2
- data/lib/oddb2xml/builder.rb +36 -26
- data/lib/oddb2xml/cli.rb +19 -4
- data/lib/oddb2xml/compressor.rb +7 -7
- data/lib/oddb2xml/downloader.rb +77 -58
- data/lib/oddb2xml/extractor.rb +31 -21
- data/lib/oddb2xml/util.rb +18 -13
- data/lib/oddb2xml/version.rb +1 -1
- data/oddb2xml.gemspec +8 -5
- data/spec/builder_spec.rb +68 -31
- data/spec/cli_spec.rb +43 -69
- data/spec/compressor_spec.rb +36 -13
- data/spec/data/compressor/oddb2xml_files_bm_update.txt +4 -0
- data/spec/data/compressor/oddb2xml_files_lppv.txt +4 -0
- data/spec/data/compressor/oddb2xml_files_nonpharma.xls +0 -0
- data/spec/data/{oddb_article.xml → compressor/oddb_article.xml} +0 -0
- data/spec/data/{oddb_fi.xml → compressor/oddb_fi.xml} +0 -0
- data/spec/data/{oddb_fi_product.xml → compressor/oddb_fi_product.xml} +0 -0
- data/spec/data/{oddb_limitation.xml → compressor/oddb_limitation.xml} +0 -0
- data/spec/data/{oddb_product.xml → compressor/oddb_product.xml} +0 -0
- data/spec/data/{oddb_substance.xml → compressor/oddb_substance.xml} +0 -0
- data/spec/data/epha_interactions.csv +4 -1
- data/spec/data/swissindex_nonpharma.xml +13 -1
- data/spec/data/swissindex_pharma.xml +12 -0
- data/spec/data/{swissmedic_fridges.xlsx → swissmedic_fridge.xlsx} +0 -0
- data/spec/data/swissmedic_orphan.xlsx +0 -0
- data/spec/data/{swissmedic_packages.xlsx → swissmedic_package.xlsx} +0 -0
- data/spec/data/zurrose_transfer.dat +12 -11
- data/spec/downloader_spec.rb +48 -13
- data/spec/extractor_spec.rb +10 -11
- data/spec/spec_helper.rb +44 -15
- data/test_options.rb +24 -8
- metadata +71 -45
- checksums.yaml +0 -15
- data/spec/data/Gestrichene_Packungen_Emballages_radies.xls +0 -1
- data/spec/data/Publications.xls +0 -1
- data/spec/data/swissmedic_fridges.xls +0 -0
- data/spec/data/swissmedic_packages.xls +0 -0
data/spec/spec_helper.rb
CHANGED
@@ -13,9 +13,37 @@ Bundler.require
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|
13
13
|
|
14
14
|
require 'rspec'
|
15
15
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require 'webmock/rspec'
|
16
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+
|
17
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+
|
18
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+
module Oddb2xml
|
19
|
+
# we override here a few directories to make input/output when running specs to
|
20
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+
# be in different places compared when running
|
21
|
+
SpecData = File.join(File.dirname(__FILE__), 'data')
|
22
|
+
WorkDir = File.join(File.dirname(__FILE__), 'run')
|
23
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+
Downloads = File.join(WorkDir, 'downloads')
|
24
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+
SpecCompressor = File.join(Oddb2xml::SpecData, 'compressor')
|
25
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+
end
|
26
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+
|
16
27
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require 'oddb2xml'
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17
28
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|
18
29
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module ServerMockHelper
|
30
|
+
def cleanup_compressor
|
31
|
+
[ File.join(Oddb2xml::SpecCompressor, '*.zip'),
|
32
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+
File.join(Oddb2xml::SpecCompressor, '*.tar.gz'),
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33
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+
File.join(Oddb2xml::SpecCompressor, 'epha_interactions.txt*'),
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34
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+
File.join(Oddb2xml::SpecCompressor, 'medregbm_company.txt*'),
|
35
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+
File.join(Oddb2xml::SpecCompressor, 'medregbm_person.txt*'),
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36
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+
File.join(Oddb2xml::SpecCompressor, 'zurrose_transfer.dat.*'),
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37
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+
File.join(Oddb2xml::SpecCompressor, 'oddb2xml_files_nonpharma.xls.*'),
|
38
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+
].each { |file| FileUtils.rm_f(Dir.glob(file), :verbose => false) if Dir.glob(file).size > 0 }
|
39
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+
end
|
40
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+
def cleanup_directories_before_run
|
41
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+
dirs = [ Oddb2xml::Downloads, Oddb2xml::WorkDir]
|
42
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+
dirs.each{ |dir| FileUtils.rm_rf(Dir.glob(File.join(dir, '*')), :verbose => false) }
|
43
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+
dirs.each{ |dir| FileUtils.makedirs(dir, :verbose => false) }
|
44
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+
cleanup_compressor
|
45
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+
end
|
46
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+
|
19
47
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def setup_server_mocks
|
20
48
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setup_bag_xml_server_mock
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21
49
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setup_swiss_index_server_mock
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@@ -31,7 +59,7 @@ module ServerMockHelper
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31
59
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def setup_bag_xml_server_mock
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32
60
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# zip
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33
61
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stub_zip_url = 'http://bag.e-mediat.net/SL2007.Web.External/File.axd?file=XMLPublications.zip'
|
34
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-
stub_response = File.read(File.
|
62
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+
stub_response = File.read(File.join(Oddb2xml::SpecData, 'XMLPublications.zip'))
|
35
63
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stub_request(:get, stub_zip_url).
|
36
64
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with(:headers => {
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37
65
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'Accept' => '*/*',
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@@ -47,7 +75,7 @@ module ServerMockHelper
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47
75
|
types.each do |type|
|
48
76
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# wsdl
|
49
77
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stub_wsdl_url = "https://index.ws.e-mediat.net/Swissindex/#{type}/ws_#{type}_V101.asmx?WSDL"
|
50
|
-
stub_response = File.read(File.
|
78
|
+
stub_response = File.read(File.join(Oddb2xml::SpecData, "wsdl_#{type.downcase}.xml"))
|
51
79
|
stub_request(:get, stub_wsdl_url).
|
52
80
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with(:headers => {
|
53
81
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'Accept' => '*/*',
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@@ -59,7 +87,7 @@ module ServerMockHelper
|
|
59
87
|
:body => stub_response)
|
60
88
|
# soap (dummy)
|
61
89
|
stub_soap_url = 'https://example.com/test'
|
62
|
-
stub_response = File.read(File.
|
90
|
+
stub_response = File.read(File.join(Oddb2xml::SpecData, "swissindex_#{type.downcase}.xml"))
|
63
91
|
stub_request(:post, stub_soap_url).
|
64
92
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with(:headers => {
|
65
93
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'Accept' => '*/*',
|
@@ -80,7 +108,8 @@ module ServerMockHelper
|
|
80
108
|
}.each_pair do |type, urls|
|
81
109
|
# html (dummy)
|
82
110
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stub_html_url = "http://#{host}" + urls[:html]
|
83
|
-
filename = File.
|
111
|
+
filename = File.join(Oddb2xml::SpecData, "swissmedic_#{type.to_s}.html")
|
112
|
+
|
84
113
|
stub_response = File.read(filename)
|
85
114
|
stub_request(:get, stub_html_url).
|
86
115
|
with(:headers => {
|
@@ -95,7 +124,7 @@ module ServerMockHelper
|
|
95
124
|
# xls
|
96
125
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if type == :orphans
|
97
126
|
stub_xls_url = "http://#{host}" + urls[:xls] + "/swissmedic_orphan.xlsx"
|
98
|
-
stub_response = File.read(File.
|
127
|
+
stub_response = File.read(File.join(Oddb2xml::SpecData, "swissmedic_orphan.xlsx"))
|
99
128
|
else
|
100
129
|
stub_xls_url = "http://#{host}" + urls[:xls] + "/swissmedic_#{type.to_s}.xlsx"
|
101
130
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stub_response = 'no_such_file'
|
@@ -115,7 +144,7 @@ module ServerMockHelper
|
|
115
144
|
def setup_swissmedic_info_server_mock
|
116
145
|
# html (dummy)
|
117
146
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stub_html_url = "http://download.swissmedicinfo.ch/Accept.aspx?ReturnUrl=%2f"
|
118
|
-
stub_response = File.read(File.
|
147
|
+
stub_response = File.read(File.join(Oddb2xml::SpecData, "swissmedic_info.html"))
|
119
148
|
stub_request(:get, stub_html_url).
|
120
149
|
with(
|
121
150
|
:headers => {
|
@@ -128,7 +157,7 @@ module ServerMockHelper
|
|
128
157
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:body => stub_response)
|
129
158
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# html (dummy 2)
|
130
159
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stub_html_url = 'http://download.swissmedicinfo.ch/Accept.aspx?ctl00$MainContent$btnOK=1'
|
131
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-
stub_response = File.read(File.
|
160
|
+
stub_response = File.read(File.join(Oddb2xml::SpecData, "swissmedic_info_2.html"))
|
132
161
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stub_request(:get, stub_html_url).
|
133
162
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with(
|
134
163
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:headers => {
|
@@ -141,7 +170,7 @@ module ServerMockHelper
|
|
141
170
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:body => stub_response)
|
142
171
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# zip
|
143
172
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stub_zip_url = 'http://download.swissmedicinfo.ch/Accept.aspx?ctl00$MainContent$BtnYes=1'
|
144
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-
stub_response = File.read(File.
|
173
|
+
stub_response = File.read(File.join(Oddb2xml::SpecData, 'swissmedic_info.zip'))
|
145
174
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stub_request(:get, stub_zip_url).
|
146
175
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with(
|
147
176
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:headers => {
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@@ -157,7 +186,7 @@ module ServerMockHelper
|
|
157
186
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def setup_epha_server_mock
|
158
187
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# csv
|
159
188
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stub_csv_url = 'https://download.epha.ch/cleaned/matrix.csv'
|
160
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-
stub_response = File.read(File.
|
189
|
+
stub_response = File.read(File.join(Oddb2xml::SpecData, 'epha_interactions.csv'))
|
161
190
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stub_request(:get, stub_csv_url).
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162
191
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with(:headers => {
|
163
192
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'Accept' => '*/*',
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@@ -171,7 +200,7 @@ module ServerMockHelper
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|
171
200
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def setup_bm_update_server_mock
|
172
201
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# txt
|
173
202
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stub_txt_url = 'https://raw.github.com/zdavatz/oddb2xml_files/master/BM_Update.txt'
|
174
|
-
stub_response = File.read(File.
|
203
|
+
stub_response = File.read(File.join(Oddb2xml::SpecData, 'oddb2xml_files_bm_update.txt'))
|
175
204
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stub_request(:get, stub_txt_url).
|
176
205
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with(:headers => {
|
177
206
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'Accept' => '*/*',
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@@ -185,7 +214,7 @@ module ServerMockHelper
|
|
185
214
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def setup_lppv_server_mock
|
186
215
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# txt
|
187
216
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stub_txt_url = 'https://raw.github.com/zdavatz/oddb2xml_files/master/LPPV.txt'
|
188
|
-
stub_response = File.read(File.
|
217
|
+
stub_response = File.read(File.join(Oddb2xml::SpecData, 'oddb2xml_files_lppv.txt'))
|
189
218
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stub_request(:get, stub_txt_url).
|
190
219
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with(:headers => {
|
191
220
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'Accept' => '*/*',
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@@ -199,7 +228,7 @@ module ServerMockHelper
|
|
199
228
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def setup_migel_server_mock
|
200
229
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# xls
|
201
230
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stub_xls_url = 'https://github.com/zdavatz/oddb2xml_files/raw/master/NON-Pharma.xls'
|
202
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-
stub_response = File.read(File.
|
231
|
+
stub_response = File.read(File.join(Oddb2xml::SpecData, 'oddb2xml_files_nonpharma.xls'))
|
203
232
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stub_request(:get, stub_xls_url).
|
204
233
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with(:headers => {
|
205
234
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'Accept' => '*/*',
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@@ -213,7 +242,7 @@ module ServerMockHelper
|
|
213
242
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def setup_medregbm_server_mock
|
214
243
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# txt betrieb
|
215
244
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stub_txt_url = 'https://www.medregbm.admin.ch/Publikation/CreateExcelListBetriebs'
|
216
|
-
stub_response = File.read(File.
|
245
|
+
stub_response = File.read(File.join(Oddb2xml::SpecData, 'medregbm_betrieb.txt'))
|
217
246
|
stub_request(:get, stub_txt_url).
|
218
247
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with(:headers => {
|
219
248
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'Accept' => '*/*',
|
@@ -225,7 +254,7 @@ module ServerMockHelper
|
|
225
254
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:body => stub_response)
|
226
255
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stub_txt_url = 'https://www.medregbm.admin.ch/Publikation/CreateExcelListMedizinalPersons'
|
227
256
|
# txt person
|
228
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-
stub_response = File.read(File.
|
257
|
+
stub_response = File.read(File.join(Oddb2xml::SpecData, 'medregbm_person.txt'))
|
229
258
|
stub_request(:get, stub_txt_url).
|
230
259
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with(:headers => {
|
231
260
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'Accept' => '*/*',
|
@@ -239,7 +268,7 @@ module ServerMockHelper
|
|
239
268
|
def setup_zurrose_server_mock
|
240
269
|
# dat
|
241
270
|
stub_dat_url = 'http://zurrose.com/fileadmin/main/lib/download.php?file=/fileadmin/user_upload/downloads/ProduktUpdate/IGM11_mit_MwSt/Vollstamm/transfer.dat'
|
242
|
-
stub_response = File.read(File.
|
271
|
+
stub_response = File.read(File.join(Oddb2xml::SpecData, 'zurrose_transfer.dat'))
|
243
272
|
stub_request(:get, stub_dat_url).
|
244
273
|
with(:headers => {
|
245
274
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'Accept' => '*/*',
|
data/test_options.rb
CHANGED
@@ -3,10 +3,11 @@
|
|
3
3
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# - runs rake install to install the gem
|
4
4
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# - Creates an output directory ausgabe/time_stamp
|
5
5
|
# - runs all commands (and add ---skip-download)
|
6
|
-
# - saveds output and
|
6
|
+
# - saveds output and downloads to ausgabe/time_stamp
|
7
7
|
|
8
8
|
|
9
9
|
require 'fileutils'
|
10
|
+
require 'socket'
|
10
11
|
|
11
12
|
def test_one_call(cmd)
|
12
13
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dest = File.join(Ausgabe, cmd.gsub(/[ -]/, '_'))
|
@@ -22,21 +23,36 @@ def test_one_call(cmd)
|
|
22
23
|
puts "#{duration} success #{res} for #{cmd}"
|
23
24
|
exit 2 unless res
|
24
25
|
FileUtils.makedirs(dest)
|
25
|
-
|
26
|
+
return unless File.directory?('downloads')
|
27
|
+
FileUtils.cp_r('downloads', dest, :preserve => true, :verbose => true) if Dir.glob(Ausgabe).size > 0
|
26
28
|
FileUtils.cp(Dir.glob('*.dat'), dest, :preserve => true, :verbose => true) if Dir.glob('*.dat').size > 0
|
27
29
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FileUtils.cp(Dir.glob('*.xml'), dest, :preserve => true, :verbose => true) if Dir.glob('*.xml').size > 0
|
28
30
|
FileUtils.cp(Dir.glob('*.gz'), dest, :preserve => true, :verbose => true) if Dir.glob('*.gz').size > 0
|
29
31
|
end
|
30
32
|
|
33
|
+
def prepare_for_gem_test
|
34
|
+
[ "rake clean gem install" , # build and install our gem first
|
35
|
+
# "gem uninstall --all --ignore-dependencies --executables",
|
36
|
+
"gem install pkg/*.gem"
|
37
|
+
].each {
|
38
|
+
|cmd|
|
39
|
+
puts "Running #{cmd}"
|
40
|
+
exit 1 unless system(cmd)
|
41
|
+
}
|
42
|
+
end
|
31
43
|
|
32
|
-
system("rake install") # build and install our gem first
|
33
44
|
Ausgabe = File.join(Dir.pwd, 'ausgabe', Time.now.strftime('%Y.%m.%d-%H:%M'))
|
45
|
+
puts "FQDN hostname #{Socket.gethostbyname(Socket.gethostname).first}"
|
34
46
|
FileUtils.makedirs(Ausgabe)
|
47
|
+
prepare_for_gem_test
|
48
|
+
# we will skip some long running tests as travis jobs must finish in less than 50 minutes
|
49
|
+
unless /travis/i.match(Socket.gethostbyname(Socket.gethostname).first)
|
50
|
+
test_one_call('oddb2xml -e')
|
51
|
+
test_one_call('oddb2xml -f dat -a nonpharma')
|
52
|
+
test_one_call('oddb2xml -a nonpharma')
|
53
|
+
end
|
54
|
+
test_one_call('oddb2xml -t md -c tar.gz')
|
55
|
+
test_one_call('oddb2xml -f xml')
|
35
56
|
test_one_call('oddb2xml -x address')
|
36
57
|
test_one_call('oddb2xml -f dat')
|
37
|
-
test_one_call('oddb2xml -f xml')
|
38
|
-
test_one_call('oddb2xml -f dat -a nonpharma')
|
39
58
|
test_one_call('oddb2xml -t md')
|
40
|
-
test_one_call('oddb2xml -a nonpharma -t md -c tar.gz')
|
41
|
-
test_one_call('oddb2xml -a nonpharma')
|
42
|
-
test_one_call('oddb2xml -e') # take hours, therefor at the end
|
metadata
CHANGED
@@ -1,46 +1,52 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: oddb2xml
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 1.8.
|
4
|
+
version: 1.8.2
|
5
|
+
prerelease:
|
5
6
|
platform: ruby
|
6
7
|
authors:
|
7
8
|
- Yasuhiro Asaka, Zeno R.R. Davatz
|
8
9
|
autorequire:
|
9
10
|
bindir: bin
|
10
11
|
cert_chain: []
|
11
|
-
date: 2014-
|
12
|
+
date: 2014-05-06 00:00:00.000000000 Z
|
12
13
|
dependencies:
|
13
14
|
- !ruby/object:Gem::Dependency
|
14
15
|
name: rubyzip
|
15
16
|
requirement: !ruby/object:Gem::Requirement
|
17
|
+
none: false
|
16
18
|
requirements:
|
17
19
|
- - ~>
|
18
20
|
- !ruby/object:Gem::Version
|
19
|
-
version:
|
21
|
+
version: 1.1.3
|
20
22
|
type: :runtime
|
21
23
|
prerelease: false
|
22
24
|
version_requirements: !ruby/object:Gem::Requirement
|
25
|
+
none: false
|
23
26
|
requirements:
|
24
27
|
- - ~>
|
25
28
|
- !ruby/object:Gem::Version
|
26
|
-
version:
|
29
|
+
version: 1.1.3
|
27
30
|
- !ruby/object:Gem::Dependency
|
28
31
|
name: archive-tar-minitar
|
29
32
|
requirement: !ruby/object:Gem::Requirement
|
33
|
+
none: false
|
30
34
|
requirements:
|
31
|
-
- -
|
35
|
+
- - ~>
|
32
36
|
- !ruby/object:Gem::Version
|
33
|
-
version:
|
37
|
+
version: 0.5.2
|
34
38
|
type: :runtime
|
35
39
|
prerelease: false
|
36
40
|
version_requirements: !ruby/object:Gem::Requirement
|
41
|
+
none: false
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|
@@ -273,66 +299,66 @@ files:
|
|
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homepage: https://github.com/zdavatz/oddb2xml
|
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|
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|
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metadata: {}
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
rubyforge_project:
|
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|
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|
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|
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|
295
|
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|
322
|
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|
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|
summary: oddb2xml creates xml files.
|
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|
test_files:
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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- spec/data/Gestrichene_Packungen_Emballages_radies.xls
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
308
|
-
- spec/data/Publications.xls
|
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|
- spec/data/XMLPublications.zip
|
335
|
+
- spec/data/compressor/oddb2xml_files_bm_update.txt
|
336
|
+
- spec/data/compressor/oddb2xml_files_lppv.txt
|
337
|
+
- spec/data/compressor/oddb2xml_files_nonpharma.xls
|
338
|
+
- spec/data/compressor/oddb_article.xml
|
339
|
+
- spec/data/compressor/oddb_fi.xml
|
340
|
+
- spec/data/compressor/oddb_fi_product.xml
|
341
|
+
- spec/data/compressor/oddb_limitation.xml
|
342
|
+
- spec/data/compressor/oddb_product.xml
|
343
|
+
- spec/data/compressor/oddb_substance.xml
|
310
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|
- spec/data/epha_interactions.csv
|
311
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|
- spec/data/medregbm_betrieb.txt
|
312
346
|
- spec/data/medregbm_person.txt
|
313
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|
- spec/data/oddb2xml_files_bm_update.txt
|
314
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|
- spec/data/oddb2xml_files_lppv.txt
|
315
349
|
- spec/data/oddb2xml_files_nonpharma.xls
|
316
|
-
- spec/data/oddb_article.xml
|
317
|
-
- spec/data/oddb_fi.xml
|
318
|
-
- spec/data/oddb_fi_product.xml
|
319
|
-
- spec/data/oddb_limitation.xml
|
320
|
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- spec/data/oddb_product.xml
|
321
|
-
- spec/data/oddb_substance.xml
|
322
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|
- spec/data/swissindex.xml
|
323
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|
- spec/data/swissindex_nonpharma.xml
|
324
352
|
- spec/data/swissindex_pharma.xml
|
353
|
+
- spec/data/swissmedic_fridge.xlsx
|
325
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|
- spec/data/swissmedic_fridges.html
|
326
|
-
- spec/data/swissmedic_fridges.xls
|
327
|
-
- spec/data/swissmedic_fridges.xlsx
|
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|
- spec/data/swissmedic_info.html
|
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|
- spec/data/swissmedic_info.zip
|
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|
- spec/data/swissmedic_info_2.html
|
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|
- spec/data/swissmedic_orphan.xlsx
|
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|
- spec/data/swissmedic_orphans.html
|
360
|
+
- spec/data/swissmedic_package.xlsx
|
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361
|
- spec/data/swissmedic_packages.html
|
334
|
-
- spec/data/swissmedic_packages.xls
|
335
|
-
- spec/data/swissmedic_packages.xlsx
|
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|
- spec/data/wsdl.xml
|
337
363
|
- spec/data/wsdl_nonpharma.xml
|
338
364
|
- spec/data/wsdl_pharma.xml
|