numru-narray 1.0.0
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- checksums.yaml +7 -0
- data/ChangeLog +602 -0
- data/MANIFEST +54 -0
- data/README +41 -0
- data/README_NARRAY.en +49 -0
- data/README_NARRAY.ja +52 -0
- data/SPEC.en +327 -0
- data/SPEC.ja +307 -0
- data/ext/numru/narray/depend +14 -0
- data/ext/numru/narray/extconf.rb +123 -0
- data/ext/numru/narray/mkmath.rb +792 -0
- data/ext/numru/narray/mknafunc.rb +212 -0
- data/ext/numru/narray/mkop.rb +733 -0
- data/ext/numru/narray/na_array.c +659 -0
- data/ext/numru/narray/na_func.c +1709 -0
- data/ext/numru/narray/na_index.c +1022 -0
- data/ext/numru/narray/na_linalg.c +635 -0
- data/ext/numru/narray/na_random.c +444 -0
- data/ext/numru/narray/narray.c +1344 -0
- data/ext/numru/narray/narray.def +29 -0
- data/ext/numru/narray/narray.h +231 -0
- data/ext/numru/narray/narray_local.h +218 -0
- data/lib/numru/narray.rb +4 -0
- data/lib/numru/narray_ext.rb +362 -0
- data/lib/numru/nmatrix.rb +248 -0
- metadata +95 -0
@@ -0,0 +1,659 @@
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/*
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na_array.c
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Numerical Array Extention for Ruby
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(C) Copyright 1999-2008 by Masahiro TANAKA
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This program is free software.
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You can distribute/modify this program
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under the same terms as Ruby itself.
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NO WARRANTY.
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*/
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#include <ruby.h>
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#include "narray.h"
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#include "narray_local.h"
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/* Multi-Dimensional Array Investigation */
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typedef struct {
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na_shape_t shape;
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VALUE val;
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} na_mdai_item_t;
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typedef struct {
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na_shape_t n;
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na_mdai_item_t *item;
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int *type;
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} na_mdai_t;
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int na_object_type(VALUE v)
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{
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switch(TYPE(v)) {
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case T_TRUE:
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case T_FALSE:
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return NA_BYTE;
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case T_FIXNUM:
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case T_BIGNUM:
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return NA_LINT;
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case T_FLOAT:
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return NA_DFLOAT;
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case T_NIL:
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return NA_NONE;
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default:
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if (IsNArray(v))
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return ((struct NARRAY *)(RDATA(v)->data))->type ;
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if (CLASS_OF(v) == cComplex)
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return NA_DCOMPLEX;
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}
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return NA_ROBJ;
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}
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static na_mdai_t *
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na_alloc_mdai(VALUE ary)
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{
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int i;
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na_shape_t n=2;
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na_mdai_t *mdai;
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mdai = ALLOC(na_mdai_t);
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mdai->n = n;
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mdai->item = ALLOC_N( na_mdai_item_t, n );
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for (i=0; i<n; ++i) {
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mdai->item[i].shape = 0;
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mdai->item[i].val = Qnil;
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}
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mdai->item[0].val = ary;
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mdai->type = ALLOC_N( int, NA_NTYPES );
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for (i=0; i<NA_NTYPES; ++i)
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mdai->type[i]=0;
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return mdai;
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}
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static void
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na_realloc_mdai(na_mdai_t *mdai, na_shape_t n_extra)
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{
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na_shape_t i, n;
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i = mdai->n;
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mdai->n += n_extra;
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n = mdai->n;
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REALLOC_N( mdai->item, na_mdai_item_t, n );
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for (; i<n; ++i) {
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mdai->item[i].shape = 0;
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mdai->item[i].val = Qnil;
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}
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}
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static na_shape_t *
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na_free_mdai(na_mdai_t *mdai, int *rank, int *type)
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{
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na_shape_t i;
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int t, r;
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na_shape_t *shape;
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for (t=i=NA_BYTE; i<NA_NTYPES; ++i) {
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if ( mdai->type[i] > 0 )
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t = na_upcast[t][i];
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}
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*type = t;
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for (i=0; i < mdai->n && mdai->item[i].shape > 0; ++i) ;
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*rank = r = i;
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shape = ALLOC_N(na_shape_t,r);
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for (i=0; r-->0; ++i) {
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shape[i] = mdai->item[r].shape;
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}
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xfree(mdai->type);
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xfree(mdai->item);
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xfree(mdai);
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return shape;
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}
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#define EXCL(r) (RTEST(rb_funcall((r),na_id_exclude_end,0)))
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/* Range as a Sequence of numbers */
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static void
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na_range_to_sequence(VALUE obj, na_shape_t *n, na_shape_t *beg, int *step)
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{
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na_shape_t end, len;
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*beg = NUM2SHAPE(rb_funcall(obj, na_id_beg, 0));
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end = NUM2SHAPE(rb_funcall(obj, na_id_end, 0));
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len = end - *beg;
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/* direction */
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if (len>0) {
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*step = 1;
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if (EXCL(obj)) --end; else ++len;
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}
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else if (len<0) {
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len = -len;
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*step = -1;
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if (EXCL(obj)) ++end; else ++len;
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}
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else /*if(len==0)*/ {
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*step = 0;
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if (!EXCL(obj)) {
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++len;
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}
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}
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*n = len;
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}
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/* investigate rank, shape, type of Array */
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static int
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na_do_mdai(na_mdai_t *mdai, int rank)
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{
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na_shape_t i, start, len, length;
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int j, dir;
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VALUE v;
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VALUE ary;
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ary = mdai->item[rank-1].val;
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len = RARRAY_LEN(ary);
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for (i=0; i < RARRAY_LEN(ary); ++i) {
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v = RARRAY_PTR(ary)[i];
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if (TYPE(v) == T_ARRAY) {
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/* check recursive array */
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for (j=0; j<rank; ++j) {
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if (mdai->item[j].val == v)
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rb_raise(rb_eStandardError,"converting recursive Array to NArray");
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}
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if ( rank >= mdai->n ) {
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na_realloc_mdai(mdai,2);
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}
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mdai->item[rank].val = v;
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if ( na_do_mdai(mdai,rank+1) ) {
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--len; /* Array is empty */
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}
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}
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else
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if ( rb_obj_is_kind_of(v, rb_cRange) ) {
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na_range_to_sequence(v,&length,&start,&dir);
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len += length-1;
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mdai->type[ na_object_type(rb_funcall(v, na_id_beg, 0)) ] = 1;
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mdai->type[ na_object_type(rb_funcall(v, na_id_end, 0)) ] = 1;
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}
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else {
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mdai->type[ na_object_type(v) ] = 1;
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if (IsNArray(v)) {
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int r;
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struct NARRAY *na; GetNArray(v,na);
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if ( na->rank == 0 ) {
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--len; /* NArray is empty */
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} else {
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if ( rank+na->rank > mdai->n ) {
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na_realloc_mdai(mdai,((na->rank-1)/4+1)*4);
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}
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for ( j=na->rank, r=rank; j-- > 0 ; ++r ) {
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if ( mdai->item[r].shape < na->shape[j] )
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mdai->item[r].shape = na->shape[j];
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}
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}
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}
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}
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}
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if (len==0) return 1; /* this array is empty */
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if (mdai->item[rank-1].shape < len) {
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mdai->item[rank-1].shape = len;
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}
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return 0;
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}
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/* get index from multiple-index */
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static na_shape_t
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na_index_pos(struct NARRAY *ary, na_shape_t *idxs)
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{
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int i;
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na_shape_t idx, pos = 0;
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for ( i = ary->rank; (i--)>0; ) {
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idx = idxs[i];
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if (idx < 0 || ary->shape[i] <= idx) {
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abort();
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rb_raise(rb_eRuntimeError,
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"Subsctipt out of range: accessing shape[%i]=%zd with %zd",
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i, ary->shape[i], idx );
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}
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pos = pos * ary->shape[i] + idx;
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}
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return pos;
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}
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static void
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na_copy_nary_to_nary(VALUE obj, struct NARRAY *dst,
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int thisrank, na_shape_t *idx)
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{
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struct NARRAY *src;
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struct slice *s;
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int i, n;
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GetNArray(obj,src);
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n = thisrank - src->rank + 1;
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s = ALLOCA_N(struct slice, dst->rank+1);
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for (i=0; i < n; ++i) {
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s[i].n = 1;
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s[i].beg = 0;
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s[i].step = 0;
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s[i].idx = NULL;
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}
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for ( ; i <= thisrank; ++i) {
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s[i].n = src->shape[i-n];
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s[i].beg = 0;
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s[i].step = 1;
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s[i].idx = NULL;
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}
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for ( ; i < dst->rank; ++i) {
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s[i].n = 1;
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s[i].beg = idx[i];
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s[i].step = 0;
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s[i].idx = NULL;
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}
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na_aset_slice(dst,src,s);
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}
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/* copy Array to NArray */
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static void
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na_copy_ary_to_nary( VALUE ary, struct NARRAY *na,
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int thisrank, na_shape_t *idx, int type )
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{
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na_shape_t i, len, pos, start, step;
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int j, dir;
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VALUE v;
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if (thisrank==0) {
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for (i = idx[0] = 0; i < RARRAY_LEN(ary); ++i) {
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v = RARRAY_PTR(ary)[i];
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if (rb_obj_is_kind_of(v, rb_cRange)) {
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na_range_to_sequence(v,&len,&start,&dir);
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if (len>0) {
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pos = na_index_pos(na,idx);
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IndGenFuncs[type](len, NA_PTR(na,pos),na_sizeof[type], start, (na_shape_t)dir);
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idx[0] += len;
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}
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}
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else if (TYPE(v) != T_ARRAY) {
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/* NIL if empty */
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if (v != Qnil) {
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pos = na_index_pos(na,idx);
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SetFuncs[type][NA_ROBJ]( 1, NA_PTR(na,pos), 0, &v, 0 );
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/* copy here */
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}
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idx[0] ++;
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}
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}
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}
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else /* thisrank > 0 */
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{
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for (i = idx[thisrank] = 0; i < RARRAY_LEN(ary); ++i) {
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v = RARRAY_PTR(ary)[i];
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if (TYPE(v) == T_ARRAY) {
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na_copy_ary_to_nary(v,na,thisrank-1,idx,type);
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if (idx[thisrank-1]>0) ++idx[thisrank];
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}
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else if (IsNArray(v)) {
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na_copy_nary_to_nary(v,na,thisrank-1,idx);
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++idx[thisrank];
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}
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else {
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for (j=thisrank; j; ) idx[--j] = 0;
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if (rb_obj_is_kind_of(v, rb_cRange)) {
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na_range_to_sequence(v,&len,&start,&dir);
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if (len>0) {
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pos = na_index_pos(na,idx);
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++idx[thisrank];
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step = na_index_pos(na,idx)-pos;
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IndGenFuncs[type]( len, NA_PTR(na,pos), na_sizeof[type]*step,
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start, (na_shape_t)dir );
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idx[thisrank] += len-1;
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}
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}
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else {
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pos = na_index_pos(na,idx);
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SetFuncs[type][NA_ROBJ]( 1, NA_PTR(na,pos), 0, &(RARRAY_PTR(ary)[i]), 0 );
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++idx[thisrank];
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}
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/* copy here */
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}
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}
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}
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}
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static VALUE
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na_ary_to_nary_w_type(VALUE ary, int type_spec, VALUE klass)
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{
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int i, rank;
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int type = NA_BYTE;
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na_shape_t *shape;
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na_shape_t *idx;
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na_mdai_t *mdai;
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struct NARRAY *na;
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VALUE v;
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/* empty array */
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if (RARRAY_LEN(ary) < 1) {
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return na_make_empty( type, klass );
|
357
|
+
}
|
358
|
+
|
359
|
+
mdai = na_alloc_mdai(ary);
|
360
|
+
na_do_mdai(mdai,1);
|
361
|
+
shape = na_free_mdai(mdai,&rank,&type);
|
362
|
+
|
363
|
+
|
364
|
+
/*
|
365
|
+
printf("rank=%i\n", rank);
|
366
|
+
printf("type=%i\n", type);
|
367
|
+
for (i=0; i<rank; ++i) {
|
368
|
+
printf("shape[%i]=%zi\n", i, shape[i]);
|
369
|
+
}
|
370
|
+
*/
|
371
|
+
|
372
|
+
/* type specification */
|
373
|
+
if (type_spec!=NA_NONE)
|
374
|
+
type = type_spec;
|
375
|
+
|
376
|
+
/* empty array */
|
377
|
+
if (rank==0)
|
378
|
+
return na_make_empty( type, klass );
|
379
|
+
|
380
|
+
/* Create NArray */
|
381
|
+
v = na_make_object(type,rank,shape,klass);
|
382
|
+
xfree(shape);
|
383
|
+
|
384
|
+
GetNArray(v,na);
|
385
|
+
na_clear_data(na);
|
386
|
+
|
387
|
+
idx = ALLOCA_N(na_shape_t,rank);
|
388
|
+
for (i=0; i<rank; ++i) idx[i]=0;
|
389
|
+
|
390
|
+
na_copy_ary_to_nary( ary, na, rank-1, idx, type );
|
391
|
+
|
392
|
+
return v;
|
393
|
+
}
|
394
|
+
|
395
|
+
|
396
|
+
VALUE
|
397
|
+
na_ary_to_nary(VALUE ary, VALUE klass)
|
398
|
+
{
|
399
|
+
return na_ary_to_nary_w_type( ary, NA_NONE, klass );
|
400
|
+
}
|
401
|
+
|
402
|
+
|
403
|
+
/* obj.kind_of?(NArray) == true */
|
404
|
+
|
405
|
+
VALUE
|
406
|
+
na_dup_w_type(VALUE v2, int type)
|
407
|
+
{
|
408
|
+
VALUE v1;
|
409
|
+
struct NARRAY *a1, *a2;
|
410
|
+
|
411
|
+
GetNArray(v2,a2);
|
412
|
+
v1 = na_make_object(type, a2->rank, a2->shape, CLASS_OF(v2));
|
413
|
+
GetNArray(v1,a1);
|
414
|
+
na_copy_nary(a1,a2);
|
415
|
+
return v1;
|
416
|
+
}
|
417
|
+
|
418
|
+
|
419
|
+
VALUE
|
420
|
+
na_change_type(VALUE obj, int type)
|
421
|
+
{
|
422
|
+
struct NARRAY *a2;
|
423
|
+
|
424
|
+
GetNArray(obj,a2);
|
425
|
+
|
426
|
+
if (a2->type == type)
|
427
|
+
return obj;
|
428
|
+
|
429
|
+
return na_dup_w_type(obj, type);
|
430
|
+
}
|
431
|
+
|
432
|
+
|
433
|
+
VALUE
|
434
|
+
na_upcast_type(VALUE obj, int type) /* na_upcast_narray */
|
435
|
+
{
|
436
|
+
int newtype;
|
437
|
+
struct NARRAY *a2;
|
438
|
+
|
439
|
+
GetNArray(obj,a2);
|
440
|
+
newtype = na_upcast[a2->type][type];
|
441
|
+
|
442
|
+
if (newtype == a2->type)
|
443
|
+
return obj;
|
444
|
+
|
445
|
+
return na_dup_w_type(obj, newtype);
|
446
|
+
}
|
447
|
+
|
448
|
+
|
449
|
+
/* obj.kind_of?(Object) == true */
|
450
|
+
|
451
|
+
VALUE
|
452
|
+
na_cast_object(VALUE obj, int type) /* na_cast_certain */
|
453
|
+
{
|
454
|
+
if (IsNArray(obj)) {
|
455
|
+
return na_change_type(obj,type);
|
456
|
+
}
|
457
|
+
if (TYPE(obj) == T_ARRAY) {
|
458
|
+
return na_ary_to_nary_w_type(obj,type,cNArray);
|
459
|
+
}
|
460
|
+
return na_make_scalar(obj,type);
|
461
|
+
}
|
462
|
+
|
463
|
+
|
464
|
+
VALUE
|
465
|
+
na_cast_unless_narray(VALUE obj, int type)
|
466
|
+
{
|
467
|
+
if (IsNArray(obj)) {
|
468
|
+
return obj;
|
469
|
+
}
|
470
|
+
if (TYPE(obj) == T_ARRAY) {
|
471
|
+
return na_ary_to_nary_w_type(obj,type,cNArray);
|
472
|
+
}
|
473
|
+
return na_make_scalar(obj,type);
|
474
|
+
}
|
475
|
+
|
476
|
+
|
477
|
+
VALUE
|
478
|
+
na_cast_unless_array(VALUE obj, int type)
|
479
|
+
{
|
480
|
+
if (IsNArray(obj)) {
|
481
|
+
return obj;
|
482
|
+
}
|
483
|
+
if (TYPE(obj) == T_ARRAY) {
|
484
|
+
return na_ary_to_nary(obj,cNArray);
|
485
|
+
}
|
486
|
+
return na_make_scalar(obj,type);
|
487
|
+
}
|
488
|
+
|
489
|
+
|
490
|
+
VALUE
|
491
|
+
na_upcast_object(VALUE obj, int type)
|
492
|
+
{
|
493
|
+
if (IsNArray(obj)) {
|
494
|
+
return na_upcast_type(obj,type);
|
495
|
+
}
|
496
|
+
if (TYPE(obj) == T_ARRAY) {
|
497
|
+
return na_ary_to_nary_w_type(obj,type,cNArray);
|
498
|
+
}
|
499
|
+
return na_make_scalar(obj,type);
|
500
|
+
}
|
501
|
+
|
502
|
+
|
503
|
+
/* :nodoc: */
|
504
|
+
VALUE
|
505
|
+
na_to_narray(VALUE obj)
|
506
|
+
{
|
507
|
+
if (IsNArray(obj)) {
|
508
|
+
return obj;
|
509
|
+
}
|
510
|
+
if (TYPE(obj) == T_ARRAY) {
|
511
|
+
return na_ary_to_nary(obj,cNArray);
|
512
|
+
}
|
513
|
+
return na_make_scalar(obj,na_object_type(obj));
|
514
|
+
}
|
515
|
+
|
516
|
+
|
517
|
+
/* convert NArray to Array */
|
518
|
+
static VALUE
|
519
|
+
na_to_array0(struct NARRAY* na, na_shape_t *idx, int thisrank, void (*func)())
|
520
|
+
{
|
521
|
+
na_shape_t i;
|
522
|
+
int elmsz;
|
523
|
+
char *ptr;
|
524
|
+
VALUE ary, val;
|
525
|
+
|
526
|
+
/* Create New Array */
|
527
|
+
ary = rb_ary_new2(na->shape[thisrank]);
|
528
|
+
|
529
|
+
if (thisrank == 0) {
|
530
|
+
ptr = NA_PTR( na, na_index_pos(na,idx) );
|
531
|
+
elmsz = na_sizeof[na->type];
|
532
|
+
for (i = na->shape[0]; i; --i) {
|
533
|
+
(*func)( 1, &val, 0, ptr, 0 );
|
534
|
+
ptr += elmsz;
|
535
|
+
rb_ary_push( ary, val );
|
536
|
+
}
|
537
|
+
}
|
538
|
+
else {
|
539
|
+
for (i = 0; i < na->shape[thisrank]; ++i) {
|
540
|
+
idx[thisrank] = i;
|
541
|
+
rb_ary_push( ary, na_to_array0(na,idx,thisrank-1,func) );
|
542
|
+
}
|
543
|
+
}
|
544
|
+
return ary;
|
545
|
+
}
|
546
|
+
|
547
|
+
|
548
|
+
/* method: to_a -- convert itself to Array */
|
549
|
+
VALUE
|
550
|
+
na_to_array(VALUE obj)
|
551
|
+
{
|
552
|
+
struct NARRAY *na;
|
553
|
+
na_shape_t *idx;
|
554
|
+
int i;
|
555
|
+
|
556
|
+
GetNArray(obj,na);
|
557
|
+
|
558
|
+
if (na->rank<1)
|
559
|
+
return rb_ary_new();
|
560
|
+
|
561
|
+
idx = ALLOCA_N(na_shape_t,na->rank);
|
562
|
+
for (i = 0; i<na->rank; ++i) idx[i] = 0;
|
563
|
+
return na_to_array0(na,idx,na->rank-1,SetFuncs[NA_ROBJ][na->type]);
|
564
|
+
}
|
565
|
+
|
566
|
+
|
567
|
+
static VALUE
|
568
|
+
na_inspect_col( na_shape_t n, char *p2, int p2step, void (*tostr)(),
|
569
|
+
VALUE sep, int rank )
|
570
|
+
{
|
571
|
+
VALUE str=Qnil, tmp;
|
572
|
+
na_shape_t max_col = 77;
|
573
|
+
na_shape_t sep_len = RSTRING_LEN(sep);
|
574
|
+
|
575
|
+
if (n>0)
|
576
|
+
(*tostr)(&str,p2);
|
577
|
+
|
578
|
+
for (n--; n>0; --n) {
|
579
|
+
p2 += p2step;
|
580
|
+
(*tostr)(&tmp,p2);
|
581
|
+
|
582
|
+
if (!NIL_P(sep)) rb_str_concat(str, sep);
|
583
|
+
|
584
|
+
if (RSTRING_LEN(str) + RSTRING_LEN(tmp) + rank*4 + sep_len < max_col) {
|
585
|
+
rb_str_concat(str, tmp);
|
586
|
+
} else {
|
587
|
+
rb_str_cat(str,"...",3);
|
588
|
+
return str;
|
589
|
+
}
|
590
|
+
}
|
591
|
+
return str;
|
592
|
+
}
|
593
|
+
|
594
|
+
|
595
|
+
/*
|
596
|
+
* Create inspect string ... under construction
|
597
|
+
*/
|
598
|
+
|
599
|
+
VALUE
|
600
|
+
na_make_inspect(VALUE val)
|
601
|
+
{
|
602
|
+
int i, ii, rank, count_line=0, max_line=10;
|
603
|
+
na_shape_t *si;
|
604
|
+
struct NARRAY *ary;
|
605
|
+
struct slice *s1;
|
606
|
+
|
607
|
+
VALUE fs = rb_str_new(", ",2);
|
608
|
+
|
609
|
+
GetNArray(val,ary);
|
610
|
+
if (ary->total < 1) return rb_str_new(0, 0);
|
611
|
+
|
612
|
+
/* Allocate Structure */
|
613
|
+
rank = ary->rank;
|
614
|
+
s1 = ALLOCA_N(struct slice, rank+1);
|
615
|
+
si = ALLOCA_N(na_shape_t,rank);
|
616
|
+
na_set_slice_1obj(rank,s1,ary->shape);
|
617
|
+
|
618
|
+
/* Iteration */
|
619
|
+
na_init_slice(s1, rank, ary->shape, na_sizeof[ary->type]);
|
620
|
+
i = rank;
|
621
|
+
s1[i].p = ary->ptr;
|
622
|
+
val = rb_str_new(0,0);
|
623
|
+
for(;;) {
|
624
|
+
/* set pointers */
|
625
|
+
while (i > 0) {
|
626
|
+
--i;
|
627
|
+
rb_str_cat(val, "[ ", 2);
|
628
|
+
s1[i].p = s1[i].pbeg + s1[i+1].p;
|
629
|
+
si[i] = s1[i].n;
|
630
|
+
}
|
631
|
+
|
632
|
+
rb_str_concat(val, na_inspect_col( s1[0].n, s1[0].p, s1[0].pstep,
|
633
|
+
InspFuncs[ary->type], fs, rank ));
|
634
|
+
|
635
|
+
/* rank up */
|
636
|
+
do {
|
637
|
+
rb_str_cat(val, " ]", 2);
|
638
|
+
if ( ++i == rank ) return val;
|
639
|
+
} while ( --si[i] == 0 );
|
640
|
+
s1[i].p += s1[i].pstep;
|
641
|
+
|
642
|
+
rb_str_concat(val, fs);
|
643
|
+
rb_str_cat(val, "\n", 1);
|
644
|
+
|
645
|
+
/* count check */
|
646
|
+
if (++count_line>=max_line) {
|
647
|
+
rb_str_cat(val, " ...", 4);
|
648
|
+
return val;
|
649
|
+
}
|
650
|
+
/* indent */
|
651
|
+
for (ii=i; ii<rank; ++ii)
|
652
|
+
rb_str_cat(val, " ", 2);
|
653
|
+
}
|
654
|
+
}
|
655
|
+
|
656
|
+
|
657
|
+
void Init_na_array() {
|
658
|
+
rb_define_method(cNArray, "to_a", na_to_array,0); //
|
659
|
+
}
|