nmatrix-fftw 0.2.1
Sign up to get free protection for your applications and to get access to all the features.
- checksums.yaml +7 -0
- data/ext/nmatrix/data/complex.h +388 -0
- data/ext/nmatrix/data/data.h +652 -0
- data/ext/nmatrix/data/meta.h +64 -0
- data/ext/nmatrix/data/ruby_object.h +389 -0
- data/ext/nmatrix/math/asum.h +120 -0
- data/ext/nmatrix/math/cblas_enums.h +36 -0
- data/ext/nmatrix/math/cblas_templates_core.h +507 -0
- data/ext/nmatrix/math/gemm.h +241 -0
- data/ext/nmatrix/math/gemv.h +178 -0
- data/ext/nmatrix/math/getrf.h +255 -0
- data/ext/nmatrix/math/getrs.h +121 -0
- data/ext/nmatrix/math/imax.h +79 -0
- data/ext/nmatrix/math/laswp.h +165 -0
- data/ext/nmatrix/math/long_dtype.h +49 -0
- data/ext/nmatrix/math/math.h +745 -0
- data/ext/nmatrix/math/nrm2.h +160 -0
- data/ext/nmatrix/math/rot.h +117 -0
- data/ext/nmatrix/math/rotg.h +106 -0
- data/ext/nmatrix/math/scal.h +71 -0
- data/ext/nmatrix/math/trsm.h +332 -0
- data/ext/nmatrix/math/util.h +148 -0
- data/ext/nmatrix/nm_memory.h +60 -0
- data/ext/nmatrix/nmatrix.h +438 -0
- data/ext/nmatrix/ruby_constants.h +106 -0
- data/ext/nmatrix/storage/common.h +177 -0
- data/ext/nmatrix/storage/dense/dense.h +129 -0
- data/ext/nmatrix/storage/list/list.h +138 -0
- data/ext/nmatrix/storage/storage.h +99 -0
- data/ext/nmatrix/storage/yale/class.h +1139 -0
- data/ext/nmatrix/storage/yale/iterators/base.h +143 -0
- data/ext/nmatrix/storage/yale/iterators/iterator.h +131 -0
- data/ext/nmatrix/storage/yale/iterators/row.h +450 -0
- data/ext/nmatrix/storage/yale/iterators/row_stored.h +140 -0
- data/ext/nmatrix/storage/yale/iterators/row_stored_nd.h +169 -0
- data/ext/nmatrix/storage/yale/iterators/stored_diagonal.h +124 -0
- data/ext/nmatrix/storage/yale/math/transpose.h +110 -0
- data/ext/nmatrix/storage/yale/yale.h +203 -0
- data/ext/nmatrix/types.h +55 -0
- data/ext/nmatrix/util/io.h +115 -0
- data/ext/nmatrix/util/sl_list.h +144 -0
- data/ext/nmatrix/util/util.h +78 -0
- data/ext/nmatrix_fftw/extconf.rb +122 -0
- data/ext/nmatrix_fftw/nmatrix_fftw.cpp +274 -0
- data/lib/nmatrix/fftw.rb +343 -0
- data/spec/00_nmatrix_spec.rb +736 -0
- data/spec/01_enum_spec.rb +190 -0
- data/spec/02_slice_spec.rb +389 -0
- data/spec/03_nmatrix_monkeys_spec.rb +78 -0
- data/spec/2x2_dense_double.mat +0 -0
- data/spec/4x4_sparse.mat +0 -0
- data/spec/4x5_dense.mat +0 -0
- data/spec/blas_spec.rb +193 -0
- data/spec/elementwise_spec.rb +303 -0
- data/spec/homogeneous_spec.rb +99 -0
- data/spec/io/fortran_format_spec.rb +88 -0
- data/spec/io/harwell_boeing_spec.rb +98 -0
- data/spec/io/test.rua +9 -0
- data/spec/io_spec.rb +149 -0
- data/spec/lapack_core_spec.rb +482 -0
- data/spec/leakcheck.rb +16 -0
- data/spec/math_spec.rb +807 -0
- data/spec/nmatrix_yale_resize_test_associations.yaml +2802 -0
- data/spec/nmatrix_yale_spec.rb +286 -0
- data/spec/plugins/fftw/fftw_spec.rb +348 -0
- data/spec/rspec_monkeys.rb +56 -0
- data/spec/rspec_spec.rb +34 -0
- data/spec/shortcuts_spec.rb +310 -0
- data/spec/slice_set_spec.rb +157 -0
- data/spec/spec_helper.rb +149 -0
- data/spec/stat_spec.rb +203 -0
- data/spec/test.pcd +20 -0
- data/spec/utm5940.mtx +83844 -0
- metadata +151 -0
@@ -0,0 +1,143 @@
|
|
1
|
+
/////////////////////////////////////////////////////////////////////
|
2
|
+
// = NMatrix
|
3
|
+
//
|
4
|
+
// A linear algebra library for scientific computation in Ruby.
|
5
|
+
// NMatrix is part of SciRuby.
|
6
|
+
//
|
7
|
+
// NMatrix was originally inspired by and derived from NArray, by
|
8
|
+
// Masahiro Tanaka: http://narray.rubyforge.org
|
9
|
+
//
|
10
|
+
// == Copyright Information
|
11
|
+
//
|
12
|
+
// SciRuby is Copyright (c) 2010 - 2014, Ruby Science Foundation
|
13
|
+
// NMatrix is Copyright (c) 2012 - 2014, John Woods and the Ruby Science Foundation
|
14
|
+
//
|
15
|
+
// Please see LICENSE.txt for additional copyright notices.
|
16
|
+
//
|
17
|
+
// == Contributing
|
18
|
+
//
|
19
|
+
// By contributing source code to SciRuby, you agree to be bound by
|
20
|
+
// our Contributor Agreement:
|
21
|
+
//
|
22
|
+
// * https://github.com/SciRuby/sciruby/wiki/Contributor-Agreement
|
23
|
+
//
|
24
|
+
// == base.h
|
25
|
+
//
|
26
|
+
// Yale storage pure virtual basic_iterator class.
|
27
|
+
//
|
28
|
+
|
29
|
+
#ifndef YALE_ITERATORS_BASE_H
|
30
|
+
# define YALE_ITERATORS_BASE_H
|
31
|
+
|
32
|
+
#include <ruby.h>
|
33
|
+
#include <type_traits>
|
34
|
+
#include <typeinfo>
|
35
|
+
#include <stdexcept>
|
36
|
+
|
37
|
+
namespace nm {
|
38
|
+
|
39
|
+
template <typename D> class YaleStorage;
|
40
|
+
|
41
|
+
namespace yale_storage {
|
42
|
+
|
43
|
+
template <typename D>
|
44
|
+
VALUE nm_rb_dereference(D const& v) {
|
45
|
+
return nm::RubyObject(v).rval;
|
46
|
+
}
|
47
|
+
|
48
|
+
template <>
|
49
|
+
VALUE nm_rb_dereference<nm::RubyObject>(nm::RubyObject const& v) {
|
50
|
+
return v.rval;
|
51
|
+
}
|
52
|
+
|
53
|
+
/*
|
54
|
+
* Iterator base class (pure virtual).
|
55
|
+
*/
|
56
|
+
template <typename D,
|
57
|
+
typename RefType,
|
58
|
+
typename YaleRef = typename std::conditional<
|
59
|
+
std::is_const<RefType>::value,
|
60
|
+
const nm::YaleStorage<D>,
|
61
|
+
nm::YaleStorage<D>
|
62
|
+
>::type>
|
63
|
+
class basic_iterator_T {
|
64
|
+
|
65
|
+
protected:
|
66
|
+
YaleRef& y;
|
67
|
+
size_t i_;
|
68
|
+
size_t p_;
|
69
|
+
|
70
|
+
public:
|
71
|
+
size_t offset(size_t d) const { return y.offset(d); }
|
72
|
+
size_t shape(size_t d) const { return y.shape(d); }
|
73
|
+
size_t real_shape(size_t d) const { return y.real_shape(d); }
|
74
|
+
|
75
|
+
size_t dense_location() const {
|
76
|
+
return i()*shape(1) + j();
|
77
|
+
}
|
78
|
+
|
79
|
+
template <typename T = typename std::conditional<std::is_const<RefType>::value, const size_t, size_t>::type>
|
80
|
+
T& ija(size_t pp) const { return y.ija(pp); }
|
81
|
+
|
82
|
+
template <typename T = typename std::conditional<std::is_const<RefType>::value, const size_t, size_t>::type>
|
83
|
+
T& ija(size_t pp) { return y.ija(pp); }
|
84
|
+
|
85
|
+
virtual bool diag() const {
|
86
|
+
return p_ < std::min(y.real_shape(0), y.real_shape(1));
|
87
|
+
}
|
88
|
+
virtual bool done_with_diag() const {
|
89
|
+
return p_ == std::min(y.real_shape(0), y.real_shape(1));
|
90
|
+
}
|
91
|
+
virtual bool nondiag() const {
|
92
|
+
return p_ > std::min(y.real_shape(0), y.real_shape(1));
|
93
|
+
}
|
94
|
+
|
95
|
+
basic_iterator_T(YaleRef& obj, size_t ii = 0, size_t pp = 0) : y(obj), i_(ii), p_(pp) { }
|
96
|
+
|
97
|
+
basic_iterator_T<D,RefType,YaleRef>& operator=(const basic_iterator_T<D,RefType,YaleRef>& rhs) {
|
98
|
+
if (&y != &(rhs.y)) throw std::logic_error("can only be used on iterators with the same matrix");
|
99
|
+
i_ = rhs.i_;
|
100
|
+
p_ = rhs.p_;
|
101
|
+
return *this;
|
102
|
+
}
|
103
|
+
|
104
|
+
virtual inline size_t i() const { return i_; }
|
105
|
+
virtual size_t j() const = 0;
|
106
|
+
|
107
|
+
virtual inline VALUE rb_i() const { return LONG2NUM(i()); }
|
108
|
+
virtual inline VALUE rb_j() const { return LONG2NUM(j()); }
|
109
|
+
|
110
|
+
virtual size_t real_i() const { return offset(0) + i(); }
|
111
|
+
virtual size_t real_j() const { return offset(1) + j(); }
|
112
|
+
virtual size_t p() const { return p_; }
|
113
|
+
virtual bool real_ndnz_exists() const { return !y.real_row_empty(real_i()) && ija(p_) == real_j(); }
|
114
|
+
|
115
|
+
virtual RefType& operator*() = 0;
|
116
|
+
virtual RefType& operator*() const = 0;
|
117
|
+
|
118
|
+
|
119
|
+
// Ruby VALUE de-reference
|
120
|
+
inline VALUE operator~() const {
|
121
|
+
return nm_rb_dereference<D>(**this);
|
122
|
+
//virtual VALUE operator~() const {
|
123
|
+
// if (typeid(D) == typeid(RubyObject)) return (**this); // FIXME: return rval instead, faster;
|
124
|
+
// else return RubyObject(*(*this)).rval;
|
125
|
+
}
|
126
|
+
|
127
|
+
virtual bool operator==(const std::pair<size_t,size_t>& ij) {
|
128
|
+
if (p() >= ija(real_shape(0))) return false;
|
129
|
+
else return i() == ij.first && j() == ij.second;
|
130
|
+
}
|
131
|
+
|
132
|
+
virtual bool operator==(const basic_iterator_T<D,RefType,YaleRef>& rhs) const {
|
133
|
+
return i() == rhs.i() && j() == rhs.j();
|
134
|
+
}
|
135
|
+
virtual bool operator!=(const basic_iterator_T<D,RefType,YaleRef>& rhs) const {
|
136
|
+
return i() != rhs.i() || j() != rhs.j();
|
137
|
+
}
|
138
|
+
};
|
139
|
+
|
140
|
+
|
141
|
+
} } // end of namespace nm::yale_storage
|
142
|
+
|
143
|
+
#endif // YALE_ITERATORS_BASE_H
|
@@ -0,0 +1,131 @@
|
|
1
|
+
/////////////////////////////////////////////////////////////////////
|
2
|
+
// = NMatrix
|
3
|
+
//
|
4
|
+
// A linear algebra library for scientific computation in Ruby.
|
5
|
+
// NMatrix is part of SciRuby.
|
6
|
+
//
|
7
|
+
// NMatrix was originally inspired by and derived from NArray, by
|
8
|
+
// Masahiro Tanaka: http://narray.rubyforge.org
|
9
|
+
//
|
10
|
+
// == Copyright Information
|
11
|
+
//
|
12
|
+
// SciRuby is Copyright (c) 2010 - 2014, Ruby Science Foundation
|
13
|
+
// NMatrix is Copyright (c) 2012 - 2014, John Woods and the Ruby Science Foundation
|
14
|
+
//
|
15
|
+
// Please see LICENSE.txt for additional copyright notices.
|
16
|
+
//
|
17
|
+
// == Contributing
|
18
|
+
//
|
19
|
+
// By contributing source code to SciRuby, you agree to be bound by
|
20
|
+
// our Contributor Agreement:
|
21
|
+
//
|
22
|
+
// * https://github.com/SciRuby/sciruby/wiki/Contributor-Agreement
|
23
|
+
//
|
24
|
+
// == iterator.h
|
25
|
+
//
|
26
|
+
// Iterate over yale as if dense
|
27
|
+
//
|
28
|
+
|
29
|
+
#ifndef YALE_ITERATORS_ITERATOR_H
|
30
|
+
# define YALE_ITERATORS_ITERATOR_H
|
31
|
+
|
32
|
+
#include <ruby.h>
|
33
|
+
#include <type_traits>
|
34
|
+
#include <typeinfo>
|
35
|
+
|
36
|
+
namespace nm { namespace yale_storage {
|
37
|
+
|
38
|
+
/*
|
39
|
+
* Iterator for traversing matrix class as if it were dense (visits each entry in order).
|
40
|
+
*/
|
41
|
+
template <typename D,
|
42
|
+
typename RefType,
|
43
|
+
typename YaleRef = typename std::conditional<
|
44
|
+
std::is_const<RefType>::value,
|
45
|
+
const nm::YaleStorage<D>,
|
46
|
+
nm::YaleStorage<D>
|
47
|
+
>::type>
|
48
|
+
class iterator_T : public basic_iterator_T<D,RefType,YaleRef> {
|
49
|
+
using basic_iterator_T<D,RefType,YaleRef>::i_;
|
50
|
+
using basic_iterator_T<D,RefType,YaleRef>::p_;
|
51
|
+
using basic_iterator_T<D,RefType,YaleRef>::y;
|
52
|
+
using basic_iterator_T<D,RefType,YaleRef>::offset;
|
53
|
+
using basic_iterator_T<D,RefType,YaleRef>::shape;
|
54
|
+
using basic_iterator_T<D,RefType,YaleRef>::ija;
|
55
|
+
|
56
|
+
protected:
|
57
|
+
size_t j_; // These are relative to the slice.
|
58
|
+
|
59
|
+
public:
|
60
|
+
// Create an iterator. May select the row since this is O(1).
|
61
|
+
iterator_T(YaleRef& obj, size_t ii = 0)
|
62
|
+
: basic_iterator_T<D,RefType,YaleRef>(obj, ii, obj.ija(ii + obj.offset(0))), j_(0)
|
63
|
+
{
|
64
|
+
// advance to the beginning of the row
|
65
|
+
if (obj.offset(1) > 0)
|
66
|
+
p_ = y.find_pos_for_insertion(i_,j_);
|
67
|
+
}
|
68
|
+
|
69
|
+
// Prefix ++
|
70
|
+
iterator_T<D,RefType,YaleRef>& operator++() {
|
71
|
+
size_t prev_j = j_++;
|
72
|
+
if (j_ >= shape(1)) {
|
73
|
+
j_ = 0;
|
74
|
+
++i_;
|
75
|
+
|
76
|
+
// Do a binary search to find the beginning of the slice
|
77
|
+
p_ = offset(0) > 0 ? y.find_pos_for_insertion(i_,j_) : ija(i_);
|
78
|
+
} else {
|
79
|
+
// If the last j was actually stored in this row of the matrix, need to advance p.
|
80
|
+
|
81
|
+
if (!y.real_row_empty(i_ + offset(0)) && ija(p_) <= prev_j + offset(1)) ++p_; // this test is the same as real_ndnz_exists
|
82
|
+
}
|
83
|
+
|
84
|
+
return *this;
|
85
|
+
}
|
86
|
+
|
87
|
+
iterator_T<D,RefType,YaleRef> operator++(int dummy) const {
|
88
|
+
iterator_T<D,RefType,YaleRef> iter(*this);
|
89
|
+
return ++iter;
|
90
|
+
}
|
91
|
+
|
92
|
+
virtual bool operator!=(const iterator_T<D,RefType,YaleRef>& rhs) const {
|
93
|
+
return this->dense_location() != rhs.dense_location();
|
94
|
+
}
|
95
|
+
|
96
|
+
virtual bool operator==(const iterator_T<D,RefType,YaleRef>& rhs) const {
|
97
|
+
return this->dense_location() == rhs.dense_location();
|
98
|
+
}
|
99
|
+
|
100
|
+
bool operator<(const iterator_T<D,RefType,YaleRef>& rhs) const {
|
101
|
+
return this->dense_location() < rhs.dense_location();
|
102
|
+
}
|
103
|
+
|
104
|
+
bool operator>(const iterator_T<D,RefType,YaleRef>& rhs) const {
|
105
|
+
return this->dense_location() > rhs.dense_location();
|
106
|
+
}
|
107
|
+
|
108
|
+
virtual bool diag() const { return i_ + offset(0) == j_ + offset(1); }
|
109
|
+
|
110
|
+
// De-reference
|
111
|
+
RefType& operator*() {
|
112
|
+
if (diag()) return y.a( i_ + offset(0) );
|
113
|
+
else if (p_ >= ija(i_+offset(0)+1)) return y.const_default_obj();
|
114
|
+
else if (!y.real_row_empty(i_ + offset(0)) && ija(p_) == j_ + offset(1)) return y.a( p_ );
|
115
|
+
else return y.const_default_obj();
|
116
|
+
}
|
117
|
+
|
118
|
+
RefType& operator*() const {
|
119
|
+
if (diag()) return y.a( i_ + offset(0) );
|
120
|
+
else if (p_ >= ija(i_+offset(0)+1)) return y.const_default_obj();
|
121
|
+
else if (!y.real_row_empty(i_ + offset(0)) && ija(p_) == j_ + offset(1)) return y.a( p_ );
|
122
|
+
else return y.const_default_obj();
|
123
|
+
}
|
124
|
+
|
125
|
+
virtual size_t j() const { return j_; }
|
126
|
+
};
|
127
|
+
|
128
|
+
|
129
|
+
} } // end of namespace nm::yale_storage
|
130
|
+
|
131
|
+
#endif // YALE_ITERATORS_ITERATOR_H
|
@@ -0,0 +1,450 @@
|
|
1
|
+
/////////////////////////////////////////////////////////////////////
|
2
|
+
// = NMatrix
|
3
|
+
//
|
4
|
+
// A linear algebra library for scientific computation in Ruby.
|
5
|
+
// NMatrix is part of SciRuby.
|
6
|
+
//
|
7
|
+
// NMatrix was originally inspired by and derived from NArray, by
|
8
|
+
// Masahiro Tanaka: http://narray.rubyforge.org
|
9
|
+
//
|
10
|
+
// == Copyright Information
|
11
|
+
//
|
12
|
+
// SciRuby is Copyright (c) 2010 - 2014, Ruby Science Foundation
|
13
|
+
// NMatrix is Copyright (c) 2012 - 2014, John Woods and the Ruby Science Foundation
|
14
|
+
//
|
15
|
+
// Please see LICENSE.txt for additional copyright notices.
|
16
|
+
//
|
17
|
+
// == Contributing
|
18
|
+
//
|
19
|
+
// By contributing source code to SciRuby, you agree to be bound by
|
20
|
+
// our Contributor Agreement:
|
21
|
+
//
|
22
|
+
// * https://github.com/SciRuby/sciruby/wiki/Contributor-Agreement
|
23
|
+
//
|
24
|
+
// == row.h
|
25
|
+
//
|
26
|
+
// Iterator for traversing a matrix row by row. Includes an
|
27
|
+
// orthogonal iterator for visiting each stored entry in a row.
|
28
|
+
// This one cannot be de-referenced; you have to de-reference
|
29
|
+
// the column.
|
30
|
+
|
31
|
+
#ifndef YALE_ITERATORS_ROW_H
|
32
|
+
# define YALE_ITERATORS_ROW_H
|
33
|
+
|
34
|
+
#include <ruby.h>
|
35
|
+
#include <stdexcept>
|
36
|
+
|
37
|
+
namespace nm { namespace yale_storage {
|
38
|
+
|
39
|
+
template <typename D,
|
40
|
+
typename RefType,
|
41
|
+
typename YaleRef = typename std::conditional<
|
42
|
+
std::is_const<RefType>::value,
|
43
|
+
const nm::YaleStorage<D>,
|
44
|
+
nm::YaleStorage<D>
|
45
|
+
>::type>
|
46
|
+
class row_iterator_T {
|
47
|
+
|
48
|
+
protected:
|
49
|
+
YaleRef& y;
|
50
|
+
size_t i_;
|
51
|
+
size_t p_first, p_last; // first and last IJA positions in the row
|
52
|
+
|
53
|
+
|
54
|
+
/*
|
55
|
+
* Update the row positions -- use to ensure a row stays valid after an insert operation. Also
|
56
|
+
* used to initialize a row iterator at a different row index.
|
57
|
+
*/
|
58
|
+
void update() {
|
59
|
+
if (i_ < y.shape(0)) {
|
60
|
+
p_first = p_real_first();
|
61
|
+
p_last = p_real_last();
|
62
|
+
if (!nd_empty()) {
|
63
|
+
// try to find new p_first
|
64
|
+
p_first = y.real_find_left_boundary_pos(p_first, p_last, y.offset(1));
|
65
|
+
if (!nd_empty()) {
|
66
|
+
// also try to find new p_last
|
67
|
+
p_last = y.real_find_left_boundary_pos(p_first, p_last, y.offset(1) + y.shape(1) - 1);
|
68
|
+
if (y.ija(p_last) - y.offset(1) >= shape(1)) --p_last; // searched too far.
|
69
|
+
}
|
70
|
+
}
|
71
|
+
} else { // invalid row -- this is an end iterator.
|
72
|
+
p_first = y.ija(y.real_shape(0));
|
73
|
+
p_last = y.ija(y.real_shape(0))-1; // mark as empty
|
74
|
+
}
|
75
|
+
}
|
76
|
+
|
77
|
+
/*
|
78
|
+
* Indicate to the row iterator that p_first and p_last have moved by some amount. Only
|
79
|
+
* defined for row_iterator, not const_row_iterator. This is a lightweight form of update().
|
80
|
+
*/
|
81
|
+
//template <typename = typename std::enable_if<!std::is_const<RefType>::value>::type>
|
82
|
+
void shift(int amount) {
|
83
|
+
p_first += amount;
|
84
|
+
p_last += amount;
|
85
|
+
}
|
86
|
+
|
87
|
+
|
88
|
+
/*
|
89
|
+
* Enlarge the row by amount by moving p_last over. This is a lightweight form of update().
|
90
|
+
*/
|
91
|
+
//template <typename = typename std::enable_if<!std::is_const<RefType>::value>::type>
|
92
|
+
void adjust_length(int amount) {
|
93
|
+
p_last += amount;
|
94
|
+
}
|
95
|
+
|
96
|
+
public:
|
97
|
+
/* typedef row_stored_iterator_T<D,RefType,YaleRef> row_stored_iterator;
|
98
|
+
typedef row_stored_nd_iterator_T<D,RefType,YaleRef> row_stored_nd_iterator;
|
99
|
+
typedef row_stored_iterator_T<D,const RefType,const YaleRef> const_row_stored_iterator;
|
100
|
+
typedef row_stored_nd_iterator_T<D,const RefType,const YaleRef> const_row_stored_nd_iterator;*/
|
101
|
+
typedef row_stored_iterator_T<D,RefType,YaleRef, row_iterator_T<D,RefType,YaleRef> > row_stored_iterator;
|
102
|
+
typedef row_stored_nd_iterator_T<D,RefType,YaleRef, row_iterator_T<D,RefType,YaleRef> > row_stored_nd_iterator;
|
103
|
+
template <typename E, typename ERefType, typename EYaleRef> friend class row_iterator_T;
|
104
|
+
friend class row_stored_iterator_T<D,RefType,YaleRef, row_iterator_T<D,RefType,YaleRef> >;
|
105
|
+
friend class row_stored_nd_iterator_T<D,RefType,YaleRef, row_iterator_T<D,RefType,YaleRef> >;//row_stored_iterator;
|
106
|
+
friend class row_stored_iterator_T<D,RefType,YaleRef, const row_iterator_T<D,RefType,YaleRef> >;
|
107
|
+
friend class row_stored_nd_iterator_T<D,RefType,YaleRef, const row_iterator_T<D,RefType,YaleRef> >;//row_stored_iterator;
|
108
|
+
friend class nm::YaleStorage<D>;
|
109
|
+
|
110
|
+
//friend row_stored_nd_iterator;
|
111
|
+
|
112
|
+
inline size_t ija(size_t pp) const { return y.ija(pp); }
|
113
|
+
inline size_t& ija(size_t pp) { return y.ija(pp); }
|
114
|
+
inline RefType& a(size_t p) const { return y.a_p()[p]; }
|
115
|
+
inline RefType& a(size_t p) { return y.a_p()[p]; }
|
116
|
+
|
117
|
+
|
118
|
+
|
119
|
+
row_iterator_T(YaleRef& obj, size_t ii = 0)
|
120
|
+
: y(obj), i_(ii)
|
121
|
+
{
|
122
|
+
update();
|
123
|
+
}
|
124
|
+
|
125
|
+
|
126
|
+
template <typename E, typename ERefType = typename std::conditional<std::is_const<RefType>::value, const E, E>::type>
|
127
|
+
bool operator!=(const row_iterator_T<E,ERefType>& rhs) const {
|
128
|
+
return i_ != rhs.i_;
|
129
|
+
}
|
130
|
+
|
131
|
+
template <typename E, typename ERefType = typename std::conditional<std::is_const<RefType>::value, const E, E>::type>
|
132
|
+
bool operator==(const row_iterator_T<E,ERefType>& rhs) const {
|
133
|
+
return i_ == rhs.i_;
|
134
|
+
}
|
135
|
+
|
136
|
+
template <typename E, typename ERefType = typename std::conditional<std::is_const<RefType>::value, const E, E>::type>
|
137
|
+
bool operator<(const row_iterator_T<E,ERefType>& rhs) const {
|
138
|
+
return i_ < rhs.i_;
|
139
|
+
}
|
140
|
+
|
141
|
+
template <typename E, typename ERefType = typename std::conditional<std::is_const<RefType>::value, const E, E>::type>
|
142
|
+
bool operator>(const row_iterator_T<E,ERefType>& rhs) const {
|
143
|
+
return i_ > rhs.i_;
|
144
|
+
}
|
145
|
+
|
146
|
+
row_iterator_T<D,RefType,YaleRef>& operator++() {
|
147
|
+
if (is_end()) throw std::out_of_range("attempted to iterate past end of slice (vertically)");
|
148
|
+
++i_;
|
149
|
+
update();
|
150
|
+
return *this;
|
151
|
+
}
|
152
|
+
|
153
|
+
row_iterator_T<D,RefType,YaleRef> operator++(int dummy) const {
|
154
|
+
row_iterator_T<D,RefType,YaleRef> next(*this);
|
155
|
+
return ++next;
|
156
|
+
}
|
157
|
+
|
158
|
+
bool is_end() const {
|
159
|
+
return i_ == y.shape(0) && p_first == y.ija(y.real_shape(0));
|
160
|
+
}
|
161
|
+
|
162
|
+
size_t real_i() const {
|
163
|
+
return i_ + y.offset(0);
|
164
|
+
}
|
165
|
+
|
166
|
+
size_t i() const {
|
167
|
+
return i_;
|
168
|
+
}
|
169
|
+
|
170
|
+
// last element of the real row
|
171
|
+
size_t p_real_last() const {
|
172
|
+
return y.ija(real_i()+1)-1;
|
173
|
+
}
|
174
|
+
|
175
|
+
// first element of the real row
|
176
|
+
size_t p_real_first() const {
|
177
|
+
return y.ija(real_i());
|
178
|
+
}
|
179
|
+
|
180
|
+
// Is the real row of the original matrix totally empty of NDs?
|
181
|
+
bool real_nd_empty() const {
|
182
|
+
return p_real_last() < p_real_first();
|
183
|
+
}
|
184
|
+
|
185
|
+
bool nd_empty() const {
|
186
|
+
return p_last < p_first;
|
187
|
+
}
|
188
|
+
|
189
|
+
// slice j coord of the diag.
|
190
|
+
size_t diag_j() const {
|
191
|
+
if (!has_diag())
|
192
|
+
throw std::out_of_range("don't call diag_j unless you've checked for one");
|
193
|
+
return real_i() - y.offset(1);
|
194
|
+
}
|
195
|
+
|
196
|
+
// return the actual position of the diagonal element for this real row, regardless of whether
|
197
|
+
// it's in range or not.
|
198
|
+
size_t p_diag() const {
|
199
|
+
return real_i();
|
200
|
+
}
|
201
|
+
|
202
|
+
// Checks to see if there is a diagonal within the slice
|
203
|
+
bool has_diag() const {
|
204
|
+
// real position of diag is real_i == real_j. Is it in range?
|
205
|
+
return (p_diag() >= y.offset(1) && p_diag() - y.offset(1) < y.shape(1));
|
206
|
+
}
|
207
|
+
|
208
|
+
// Checks to see if the diagonal is the first entry in the slice.
|
209
|
+
bool is_diag_first() const {
|
210
|
+
if (!has_diag()) return false;
|
211
|
+
if (nd_empty()) return true;
|
212
|
+
return diag_j() < y.ija(p_first) - y.offset(1);
|
213
|
+
}
|
214
|
+
|
215
|
+
// Checks to see if the diagonal is the last entry in the slice.
|
216
|
+
bool is_diag_last() const {
|
217
|
+
if (!has_diag()) return false;
|
218
|
+
if (nd_empty()) return true;
|
219
|
+
return diag_j() > y.ija(p_last);
|
220
|
+
}
|
221
|
+
|
222
|
+
// Is the row of the slice totally empty of NDs and Ds?
|
223
|
+
// We can only determine that it's empty of Ds if the diagonal
|
224
|
+
// is not a part of the sliced portion of the row.
|
225
|
+
bool empty() const {
|
226
|
+
return nd_empty() && has_diag();
|
227
|
+
}
|
228
|
+
|
229
|
+
|
230
|
+
size_t shape(size_t pp) const {
|
231
|
+
return y.shape(pp);
|
232
|
+
}
|
233
|
+
|
234
|
+
size_t offset(size_t pp) const {
|
235
|
+
return y.offset(pp);
|
236
|
+
}
|
237
|
+
|
238
|
+
inline VALUE rb_i() const { return LONG2NUM(i()); }
|
239
|
+
|
240
|
+
row_stored_iterator_T<D,RefType,YaleRef> begin() { return row_stored_iterator_T<D,RefType,YaleRef>(*this, p_first); }
|
241
|
+
row_stored_nd_iterator_T<D,RefType,YaleRef> ndbegin() { return row_stored_nd_iterator_T<D,RefType,YaleRef>(*this, p_first); }
|
242
|
+
row_stored_iterator_T<D,RefType,YaleRef> end() { return row_stored_iterator_T<D,RefType,YaleRef>(*this, p_last+1, true); }
|
243
|
+
row_stored_nd_iterator_T<D,RefType,YaleRef> ndend() { return row_stored_nd_iterator_T<D,RefType,YaleRef>(*this, p_last+1); }
|
244
|
+
|
245
|
+
row_stored_iterator_T<D,RefType,YaleRef> begin() const { return row_stored_iterator_T<D,RefType,YaleRef>(*this, p_first); }
|
246
|
+
row_stored_nd_iterator_T<D,RefType,YaleRef> ndbegin() const { return row_stored_nd_iterator_T<D,RefType,YaleRef>(*this, p_first); }
|
247
|
+
row_stored_iterator_T<D,RefType,YaleRef> end() const { return row_stored_iterator_T<D,RefType,YaleRef>(*this, p_last+1, true); }
|
248
|
+
row_stored_nd_iterator_T<D,RefType,YaleRef> ndend() const { return row_stored_nd_iterator_T<D,RefType,YaleRef>(*this, p_last+1); }
|
249
|
+
|
250
|
+
|
251
|
+
row_stored_nd_iterator_T<D,RefType,YaleRef> lower_bound(const size_t& j) const {
|
252
|
+
row_stored_nd_iterator_T<D,RefType,YaleRef>(*this, y.real_find_left_boundary_pos(p_first, p_last, y.offset(1)));
|
253
|
+
}
|
254
|
+
|
255
|
+
row_stored_nd_iterator_T<D,RefType,YaleRef> ndfind(size_t j) {
|
256
|
+
if (j == 0) return ndbegin();
|
257
|
+
size_t p = p_first > p_last ? p_first : y.real_find_left_boundary_pos(p_first, p_last, j + y.offset(1));
|
258
|
+
row_stored_nd_iterator iter = row_stored_nd_iterator_T<D,RefType,YaleRef>(*this, p);
|
259
|
+
return iter;
|
260
|
+
}
|
261
|
+
|
262
|
+
row_stored_iterator_T<D,RefType,YaleRef> find(size_t j) {
|
263
|
+
if (j == 0) return begin(); // may or may not be on the diagonal
|
264
|
+
else return row_stored_iterator_T<D,RefType,YaleRef>(*this, ndfind(j).p(), false); // is on the diagonal, definitely
|
265
|
+
}
|
266
|
+
|
267
|
+
/*
|
268
|
+
* Remove an entry from an already found non-diagonal position. Adjust this row appropriately so we can continue to
|
269
|
+
* use it.
|
270
|
+
*/
|
271
|
+
//template <typename = typename std::enable_if<!std::is_const<RefType>::value>::type>
|
272
|
+
row_stored_nd_iterator erase(row_stored_nd_iterator position) {
|
273
|
+
size_t sz = y.size();
|
274
|
+
if (sz - 1 <= y.capacity() / nm::yale_storage::GROWTH_CONSTANT) {
|
275
|
+
y.update_resize_move(position, real_i(), -1);
|
276
|
+
} else {
|
277
|
+
y.move_left(position, 1);
|
278
|
+
y.update_real_row_sizes_from(real_i(), -1);
|
279
|
+
}
|
280
|
+
adjust_length(-1);
|
281
|
+
return row_stored_nd_iterator(*this, position.p()-1);
|
282
|
+
}
|
283
|
+
|
284
|
+
/*
|
285
|
+
* Remove an entry from the matrix at the already-located position. If diagonal, just sets to default; otherwise,
|
286
|
+
* actually removes the entry.
|
287
|
+
*/
|
288
|
+
//template <typename = typename std::enable_if<!std::is_const<RefType>::value>::type>
|
289
|
+
row_stored_nd_iterator erase(const row_stored_iterator& jt) {
|
290
|
+
if (jt.diag()) {
|
291
|
+
*jt = y.const_default_obj(); // diagonal is the easy case -- no movement.
|
292
|
+
return row_stored_nd_iterator(*this, jt.p());
|
293
|
+
} else {
|
294
|
+
return erase(row_stored_nd_iterator(*this, jt.p()));
|
295
|
+
}
|
296
|
+
}
|
297
|
+
|
298
|
+
|
299
|
+
|
300
|
+
//template <typename = typename std::enable_if<!std::is_const<RefType>::value>::type>
|
301
|
+
row_stored_nd_iterator insert(row_stored_nd_iterator position, size_t jj, const D& val) {
|
302
|
+
size_t sz = y.size();
|
303
|
+
while (!position.end() && position.j() < jj) ++position; // position is just a hint. (This loop ideally only has to happen once.)
|
304
|
+
|
305
|
+
if (!position.end() && position.j() == jj) {
|
306
|
+
*position = val; // replace existing
|
307
|
+
} else {
|
308
|
+
|
309
|
+
if (sz + 1 > y.capacity()) {
|
310
|
+
y.update_resize_move(position, real_i(), 1);
|
311
|
+
} else {
|
312
|
+
y.move_right(position, 1);
|
313
|
+
y.update_real_row_sizes_from(real_i(), 1);
|
314
|
+
}
|
315
|
+
ija(position.p()) = jj + y.offset(1); // set column ID
|
316
|
+
a(position.p()) = val;
|
317
|
+
adjust_length(1);
|
318
|
+
}
|
319
|
+
|
320
|
+
return position++;
|
321
|
+
}
|
322
|
+
|
323
|
+
|
324
|
+
/*
|
325
|
+
* This version of insert doesn't return anything. Why, when the others do?
|
326
|
+
*
|
327
|
+
* Well, mainly because j here can be a diagonal entry. Most of the inserters return the *next* element following
|
328
|
+
* the insertion, but to do that, we have to create a row_stored_nd_iterator, which requires at least one binary
|
329
|
+
* search for the location following the diagonal (and as of the writing of this, two binary searches). There's no
|
330
|
+
* reason to do that when we never actually *use* the return value. So instead we just have void.
|
331
|
+
*/
|
332
|
+
//template <typename = typename std::enable_if<!std::is_const<RefType>::value>::type>
|
333
|
+
void insert(size_t j, const D& val) {
|
334
|
+
if (j + y.offset(1) == real_i()) a(real_i()) = val;
|
335
|
+
else {
|
336
|
+
row_stored_nd_iterator jt = ndfind(j);
|
337
|
+
if (!jt.end() && jt.j() == j) {
|
338
|
+
if (val == y.const_default_obj()) erase(jt); // erase
|
339
|
+
else insert(jt, j, val); // replace
|
340
|
+
} else { // only insert if it's not the default
|
341
|
+
if (val != y.const_default_obj()) insert(jt, j, val);
|
342
|
+
}
|
343
|
+
}
|
344
|
+
}
|
345
|
+
|
346
|
+
|
347
|
+
/*
|
348
|
+
* Determines a plan for inserting a single row. Returns an integer giving the amount of the row change.
|
349
|
+
*/
|
350
|
+
int single_row_insertion_plan(row_stored_nd_iterator position, size_t jj, size_t length, D const* v, size_t v_size, size_t& v_offset) {
|
351
|
+
int nd_change = 0;
|
352
|
+
|
353
|
+
for (size_t jc = jj; jc < jj + length; ++jc, ++v_offset) {
|
354
|
+
if (v_offset >= v_size) v_offset %= v_size; // reset v position.
|
355
|
+
|
356
|
+
if (jc + y.offset(1) != real_i()) { // diagonal -- no nd_change here
|
357
|
+
if (position.end()) {
|
358
|
+
if (v[v_offset] != y.const_default_obj()) nd_change++; // insert
|
359
|
+
} else if (position.j() != jc) { // not present -- do we need to add it?
|
360
|
+
if (v[v_offset] != y.const_default_obj()) nd_change++;
|
361
|
+
} else { // position.j() == jc
|
362
|
+
if (v[v_offset] == y.const_default_obj()) nd_change--;
|
363
|
+
++position; // move iterator forward.
|
364
|
+
}
|
365
|
+
}
|
366
|
+
}
|
367
|
+
return nd_change;
|
368
|
+
}
|
369
|
+
|
370
|
+
/*
|
371
|
+
* Determine a plan for inserting a single row -- finds the position first. Returns the position and
|
372
|
+
* the change amount. Don't use this one if you can help it because it requires a binary search of
|
373
|
+
* the row.
|
374
|
+
*/
|
375
|
+
std::pair<int,size_t> single_row_insertion_plan(size_t jj, size_t length, D const* v, size_t v_size, size_t& v_offset) {
|
376
|
+
std::pair<int,size_t> result;
|
377
|
+
row_stored_nd_iterator pos = ndfind(jj);
|
378
|
+
result.first = single_row_insertion_plan(pos, jj, length, v, v_size, v_offset);
|
379
|
+
result.second = pos.p();
|
380
|
+
return result;
|
381
|
+
}
|
382
|
+
|
383
|
+
/*
|
384
|
+
* Insert elements into a single row. Returns an iterator to the end of the insertion range.
|
385
|
+
*/
|
386
|
+
row_stored_nd_iterator insert(row_stored_nd_iterator position, size_t jj, size_t length, D const* v, size_t v_size, size_t& v_offset) {
|
387
|
+
size_t tmp_v_offset = v_offset;
|
388
|
+
int nd_change = single_row_insertion_plan(position, jj, length, v, v_size, tmp_v_offset);
|
389
|
+
|
390
|
+
// First record the position, just in case our iterator becomes invalid.
|
391
|
+
size_t pp = position.p();
|
392
|
+
|
393
|
+
// Resize the array as necessary, or move entries after the insertion point to make room.
|
394
|
+
size_t sz = y.size();
|
395
|
+
if (sz + nd_change > y.capacity() || sz + nd_change <= y.capacity() / nm::yale_storage::GROWTH_CONSTANT)
|
396
|
+
y.update_resize_move(position, real_i(), nd_change);
|
397
|
+
else if (nd_change != 0) {
|
398
|
+
if (nd_change < 0) y.move_left(position, -nd_change);
|
399
|
+
else if (nd_change > 0) y.move_right(position, nd_change);
|
400
|
+
y.update_real_row_sizes_from(real_i(), nd_change);
|
401
|
+
}
|
402
|
+
|
403
|
+
for (size_t jc = jj; jc < jj + length; ++jc, ++v_offset) {
|
404
|
+
if (v_offset >= v_size) v_offset %= v_size; // reset v position.
|
405
|
+
|
406
|
+
if (jc + y.offset(1) == real_i()) {
|
407
|
+
y.a(real_i()) = v[v_offset]; // modify diagonal
|
408
|
+
} else if (v[v_offset] != y.const_default_obj()) {
|
409
|
+
y.ija(pp) = jc; // modify non-diagonal
|
410
|
+
y.a(pp) = v[v_offset];
|
411
|
+
++pp;
|
412
|
+
}
|
413
|
+
}
|
414
|
+
|
415
|
+
// Update this row.
|
416
|
+
adjust_length(nd_change);
|
417
|
+
|
418
|
+
return row_stored_nd_iterator(*this, pp);
|
419
|
+
}
|
420
|
+
|
421
|
+
/*
|
422
|
+
* For when we don't need to worry about the offset, does the same thing as the insert above.
|
423
|
+
*/
|
424
|
+
row_stored_nd_iterator insert(const row_stored_nd_iterator& position, size_t jj, size_t length, D const* v, size_t v_size) {
|
425
|
+
size_t v_offset = 0;
|
426
|
+
return insert(position, jj, length, v, v_size, v_offset);
|
427
|
+
}
|
428
|
+
|
429
|
+
|
430
|
+
/*
|
431
|
+
* Merges elements offered for insertion with existing elements in the row.
|
432
|
+
*/
|
433
|
+
row_stored_nd_iterator insert(size_t jj, size_t length, D const* v, size_t v_size, size_t& v_offset) {
|
434
|
+
return insert(ndfind(jj), jj, length, v, v_size, v_offset);
|
435
|
+
}
|
436
|
+
|
437
|
+
/*
|
438
|
+
* Merges elements offered for insertion with existing elements in the row.
|
439
|
+
*/
|
440
|
+
row_stored_nd_iterator insert(size_t jj, size_t length, D const* v, size_t v_size) {
|
441
|
+
size_t v_offset = 0;
|
442
|
+
return insert(ndfind(jj), jj, length, v, v_size, v_offset);
|
443
|
+
}
|
444
|
+
|
445
|
+
|
446
|
+
};
|
447
|
+
|
448
|
+
} } // end of nm::yale_storage namespace
|
449
|
+
|
450
|
+
#endif // YALE_ITERATORS_ROW_H
|