nmatrix-atlas 0.2.0
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- checksums.yaml +7 -0
- data/ext/nmatrix/data/complex.h +364 -0
- data/ext/nmatrix/data/data.h +638 -0
- data/ext/nmatrix/data/meta.h +64 -0
- data/ext/nmatrix/data/ruby_object.h +389 -0
- data/ext/nmatrix/math/asum.h +120 -0
- data/ext/nmatrix/math/cblas_enums.h +36 -0
- data/ext/nmatrix/math/cblas_templates_core.h +507 -0
- data/ext/nmatrix/math/gemm.h +241 -0
- data/ext/nmatrix/math/gemv.h +178 -0
- data/ext/nmatrix/math/getrf.h +255 -0
- data/ext/nmatrix/math/getrs.h +121 -0
- data/ext/nmatrix/math/imax.h +79 -0
- data/ext/nmatrix/math/laswp.h +165 -0
- data/ext/nmatrix/math/long_dtype.h +49 -0
- data/ext/nmatrix/math/math.h +744 -0
- data/ext/nmatrix/math/nrm2.h +160 -0
- data/ext/nmatrix/math/rot.h +117 -0
- data/ext/nmatrix/math/rotg.h +106 -0
- data/ext/nmatrix/math/scal.h +71 -0
- data/ext/nmatrix/math/trsm.h +332 -0
- data/ext/nmatrix/math/util.h +148 -0
- data/ext/nmatrix/nm_memory.h +60 -0
- data/ext/nmatrix/nmatrix.h +408 -0
- data/ext/nmatrix/ruby_constants.h +106 -0
- data/ext/nmatrix/storage/common.h +176 -0
- data/ext/nmatrix/storage/dense/dense.h +128 -0
- data/ext/nmatrix/storage/list/list.h +137 -0
- data/ext/nmatrix/storage/storage.h +98 -0
- data/ext/nmatrix/storage/yale/class.h +1139 -0
- data/ext/nmatrix/storage/yale/iterators/base.h +142 -0
- data/ext/nmatrix/storage/yale/iterators/iterator.h +130 -0
- data/ext/nmatrix/storage/yale/iterators/row.h +449 -0
- data/ext/nmatrix/storage/yale/iterators/row_stored.h +139 -0
- data/ext/nmatrix/storage/yale/iterators/row_stored_nd.h +168 -0
- data/ext/nmatrix/storage/yale/iterators/stored_diagonal.h +123 -0
- data/ext/nmatrix/storage/yale/math/transpose.h +110 -0
- data/ext/nmatrix/storage/yale/yale.h +202 -0
- data/ext/nmatrix/types.h +54 -0
- data/ext/nmatrix/util/io.h +115 -0
- data/ext/nmatrix/util/sl_list.h +143 -0
- data/ext/nmatrix/util/util.h +78 -0
- data/ext/nmatrix_atlas/extconf.rb +250 -0
- data/ext/nmatrix_atlas/math_atlas.cpp +1206 -0
- data/ext/nmatrix_atlas/math_atlas/cblas_templates_atlas.h +72 -0
- data/ext/nmatrix_atlas/math_atlas/clapack_templates.h +332 -0
- data/ext/nmatrix_atlas/math_atlas/geev.h +82 -0
- data/ext/nmatrix_atlas/math_atlas/gesdd.h +83 -0
- data/ext/nmatrix_atlas/math_atlas/gesvd.h +81 -0
- data/ext/nmatrix_atlas/math_atlas/inc.h +47 -0
- data/ext/nmatrix_atlas/nmatrix_atlas.cpp +44 -0
- data/lib/nmatrix/atlas.rb +213 -0
- data/lib/nmatrix/lapack_ext_common.rb +69 -0
- data/spec/00_nmatrix_spec.rb +730 -0
- data/spec/01_enum_spec.rb +190 -0
- data/spec/02_slice_spec.rb +389 -0
- data/spec/03_nmatrix_monkeys_spec.rb +78 -0
- data/spec/2x2_dense_double.mat +0 -0
- data/spec/4x4_sparse.mat +0 -0
- data/spec/4x5_dense.mat +0 -0
- data/spec/blas_spec.rb +193 -0
- data/spec/elementwise_spec.rb +303 -0
- data/spec/homogeneous_spec.rb +99 -0
- data/spec/io/fortran_format_spec.rb +88 -0
- data/spec/io/harwell_boeing_spec.rb +98 -0
- data/spec/io/test.rua +9 -0
- data/spec/io_spec.rb +149 -0
- data/spec/lapack_core_spec.rb +482 -0
- data/spec/leakcheck.rb +16 -0
- data/spec/math_spec.rb +730 -0
- data/spec/nmatrix_yale_resize_test_associations.yaml +2802 -0
- data/spec/nmatrix_yale_spec.rb +286 -0
- data/spec/plugins/atlas/atlas_spec.rb +242 -0
- data/spec/rspec_monkeys.rb +56 -0
- data/spec/rspec_spec.rb +34 -0
- data/spec/shortcuts_spec.rb +310 -0
- data/spec/slice_set_spec.rb +157 -0
- data/spec/spec_helper.rb +140 -0
- data/spec/stat_spec.rb +203 -0
- data/spec/test.pcd +20 -0
- data/spec/utm5940.mtx +83844 -0
- metadata +159 -0
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/////////////////////////////////////////////////////////////////////
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// = NMatrix
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//
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// A linear algebra library for scientific computation in Ruby.
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// NMatrix is part of SciRuby.
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//
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// NMatrix was originally inspired by and derived from NArray, by
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// Masahiro Tanaka: http://narray.rubyforge.org
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//
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// == Copyright Information
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//
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// SciRuby is Copyright (c) 2010 - 2014, Ruby Science Foundation
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// NMatrix is Copyright (c) 2012 - 2014, John Woods and the Ruby Science Foundation
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//
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// Please see LICENSE.txt for additional copyright notices.
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//
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// == Contributing
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//
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// By contributing source code to SciRuby, you agree to be bound by
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// our Contributor Agreement:
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//
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// * https://github.com/SciRuby/sciruby/wiki/Contributor-Agreement
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//
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// == gemm.h
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//
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// Header file for interface with ATLAS's CBLAS gemm functions and
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// native templated version of LAPACK's gemm function.
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//
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#ifndef GEMM_H
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# define GEMM_H
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#include "cblas_enums.h"
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#include "math/long_dtype.h"
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namespace nm { namespace math {
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/*
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* GEneral Matrix Multiplication: based on dgemm.f from Netlib.
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*
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* This is an extremely inefficient algorithm. Recommend using ATLAS' version instead.
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*
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* Template parameters: LT -- long version of type T. Type T is the matrix dtype.
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*
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* This version throws no errors. Use gemm<DType> instead for error checking.
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*/
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template <typename DType>
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inline void gemm_nothrow(const enum CBLAS_TRANSPOSE TransA, const enum CBLAS_TRANSPOSE TransB, const int M, const int N, const int K,
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const DType* alpha, const DType* A, const int lda, const DType* B, const int ldb, const DType* beta, DType* C, const int ldc)
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{
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typename LongDType<DType>::type temp;
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// Quick return if possible
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if (!M or !N or ((*alpha == 0 or !K) and *beta == 1)) return;
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// For alpha = 0
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if (*alpha == 0) {
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if (*beta == 0) {
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for (int j = 0; j < N; ++j)
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for (int i = 0; i < M; ++i) {
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C[i+j*ldc] = 0;
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}
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} else {
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for (int j = 0; j < N; ++j)
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for (int i = 0; i < M; ++i) {
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C[i+j*ldc] *= *beta;
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}
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}
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return;
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}
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// Start the operations
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if (TransB == CblasNoTrans) {
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if (TransA == CblasNoTrans) {
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// C = alpha*A*B+beta*C
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for (int j = 0; j < N; ++j) {
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if (*beta == 0) {
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for (int i = 0; i < M; ++i) {
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C[i+j*ldc] = 0;
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}
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} else if (*beta != 1) {
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for (int i = 0; i < M; ++i) {
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C[i+j*ldc] *= *beta;
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}
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}
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for (int l = 0; l < K; ++l) {
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if (B[l+j*ldb] != 0) {
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temp = *alpha * B[l+j*ldb];
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for (int i = 0; i < M; ++i) {
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C[i+j*ldc] += A[i+l*lda] * temp;
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}
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}
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}
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}
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} else {
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// C = alpha*A**DType*B + beta*C
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for (int j = 0; j < N; ++j) {
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for (int i = 0; i < M; ++i) {
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temp = 0;
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for (int l = 0; l < K; ++l) {
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temp += A[l+i*lda] * B[l+j*ldb];
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}
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if (*beta == 0) {
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C[i+j*ldc] = *alpha*temp;
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} else {
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C[i+j*ldc] = *alpha*temp + *beta*C[i+j*ldc];
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}
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}
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}
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}
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} else if (TransA == CblasNoTrans) {
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// C = alpha*A*B**T + beta*C
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for (int j = 0; j < N; ++j) {
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if (*beta == 0) {
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for (int i = 0; i < M; ++i) {
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C[i+j*ldc] = 0;
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}
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} else if (*beta != 1) {
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for (int i = 0; i < M; ++i) {
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C[i+j*ldc] *= *beta;
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}
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}
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for (int l = 0; l < K; ++l) {
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if (B[j+l*ldb] != 0) {
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temp = *alpha * B[j+l*ldb];
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for (int i = 0; i < M; ++i) {
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C[i+j*ldc] += A[i+l*lda] * temp;
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}
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}
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}
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}
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} else {
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// C = alpha*A**DType*B**T + beta*C
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for (int j = 0; j < N; ++j) {
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for (int i = 0; i < M; ++i) {
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temp = 0;
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for (int l = 0; l < K; ++l) {
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temp += A[l+i*lda] * B[j+l*ldb];
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}
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if (*beta == 0) {
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C[i+j*ldc] = *alpha*temp;
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} else {
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C[i+j*ldc] = *alpha*temp + *beta*C[i+j*ldc];
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}
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}
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}
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}
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return;
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}
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template <typename DType>
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inline void gemm(const enum CBLAS_ORDER Order, const enum CBLAS_TRANSPOSE TransA, const enum CBLAS_TRANSPOSE TransB, const int M, const int N, const int K,
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const DType* alpha, const DType* A, const int lda, const DType* B, const int ldb, const DType* beta, DType* C, const int ldc)
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{
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if (Order == CblasRowMajor) {
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if (TransA == CblasNoTrans) {
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if (lda < std::max(K,1)) {
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rb_raise(rb_eArgError, "lda must be >= MAX(K,1): lda=%d K=%d", lda, K);
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}
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} else {
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if (lda < std::max(M,1)) { // && TransA == CblasTrans
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rb_raise(rb_eArgError, "lda must be >= MAX(M,1): lda=%d M=%d", lda, M);
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}
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}
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if (TransB == CblasNoTrans) {
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if (ldb < std::max(N,1)) {
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rb_raise(rb_eArgError, "ldb must be >= MAX(N,1): ldb=%d N=%d", ldb, N);
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}
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} else {
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if (ldb < std::max(K,1)) {
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rb_raise(rb_eArgError, "ldb must be >= MAX(K,1): ldb=%d K=%d", ldb, K);
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}
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}
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if (ldc < std::max(N,1)) {
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rb_raise(rb_eArgError, "ldc must be >= MAX(N,1): ldc=%d N=%d", ldc, N);
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}
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} else { // CblasColMajor
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if (TransA == CblasNoTrans) {
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if (lda < std::max(M,1)) {
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rb_raise(rb_eArgError, "lda must be >= MAX(M,1): lda=%d M=%d", lda, M);
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}
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} else {
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if (lda < std::max(K,1)) { // && TransA == CblasTrans
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rb_raise(rb_eArgError, "lda must be >= MAX(K,1): lda=%d K=%d", lda, K);
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}
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}
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if (TransB == CblasNoTrans) {
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if (ldb < std::max(K,1)) {
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rb_raise(rb_eArgError, "ldb must be >= MAX(K,1): ldb=%d N=%d", ldb, K);
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}
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} else {
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if (ldb < std::max(N,1)) { // NOTE: This error message is actually wrong in the ATLAS source currently. Or are we wrong?
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rb_raise(rb_eArgError, "ldb must be >= MAX(N,1): ldb=%d N=%d", ldb, N);
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}
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}
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if (ldc < std::max(M,1)) {
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rb_raise(rb_eArgError, "ldc must be >= MAX(M,1): ldc=%d N=%d", ldc, M);
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}
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}
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/*
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* Call SYRK when that's what the user is actually asking for; just handle beta=0, because beta=X requires
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* we copy C and then subtract to preserve asymmetry.
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*/
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if (A == B && M == N && TransA != TransB && lda == ldb && beta == 0) {
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rb_raise(rb_eNotImpError, "syrk and syreflect not implemented");
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/*syrk<DType>(CblasUpper, (Order == CblasColMajor) ? TransA : TransB, N, K, alpha, A, lda, beta, C, ldc);
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syreflect(CblasUpper, N, C, ldc);
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*/
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}
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if (Order == CblasRowMajor) gemm_nothrow<DType>(TransB, TransA, N, M, K, alpha, B, ldb, A, lda, beta, C, ldc);
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else gemm_nothrow<DType>(TransA, TransB, M, N, K, alpha, A, lda, B, ldb, beta, C, ldc);
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}
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}} // end of namespace nm::math
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#endif // GEMM_H
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/////////////////////////////////////////////////////////////////////
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// = NMatrix
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//
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4
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// A linear algebra library for scientific computation in Ruby.
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5
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// NMatrix is part of SciRuby.
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6
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+
//
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7
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// NMatrix was originally inspired by and derived from NArray, by
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8
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// Masahiro Tanaka: http://narray.rubyforge.org
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//
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// == Copyright Information
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//
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// SciRuby is Copyright (c) 2010 - 2014, Ruby Science Foundation
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// NMatrix is Copyright (c) 2012 - 2014, John Woods and the Ruby Science Foundation
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//
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// Please see LICENSE.txt for additional copyright notices.
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//
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// == Contributing
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//
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// By contributing source code to SciRuby, you agree to be bound by
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// our Contributor Agreement:
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//
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// * https://github.com/SciRuby/sciruby/wiki/Contributor-Agreement
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//
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// == gemv.h
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//
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// Header file for interface with ATLAS's CBLAS gemv functions and
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// native templated version of LAPACK's gemv function.
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//
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#ifndef GEMV_H
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# define GEMV_H
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#include "math/long_dtype.h"
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namespace nm { namespace math {
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/*
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* GEneral Matrix-Vector multiplication: based on dgemv.f from Netlib.
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*
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* This is an extremely inefficient algorithm. Recommend using ATLAS' version instead.
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*
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* Template parameters: LT -- long version of type T. Type T is the matrix dtype.
|
43
|
+
*/
|
44
|
+
template <typename DType>
|
45
|
+
inline bool gemv(const enum CBLAS_TRANSPOSE Trans, const int M, const int N, const DType* alpha, const DType* A, const int lda,
|
46
|
+
const DType* X, const int incX, const DType* beta, DType* Y, const int incY) {
|
47
|
+
int lenX, lenY, i, j;
|
48
|
+
int kx, ky, iy, jx, jy, ix;
|
49
|
+
|
50
|
+
typename LongDType<DType>::type temp;
|
51
|
+
|
52
|
+
// Test the input parameters
|
53
|
+
if (Trans < 111 || Trans > 113) {
|
54
|
+
rb_raise(rb_eArgError, "GEMV: TransA must be CblasNoTrans, CblasTrans, or CblasConjTrans");
|
55
|
+
return false;
|
56
|
+
} else if (lda < std::max(1, N)) {
|
57
|
+
fprintf(stderr, "GEMV: N = %d; got lda=%d", N, lda);
|
58
|
+
rb_raise(rb_eArgError, "GEMV: Expected lda >= max(1, N)");
|
59
|
+
return false;
|
60
|
+
} else if (incX == 0) {
|
61
|
+
rb_raise(rb_eArgError, "GEMV: Expected incX != 0\n");
|
62
|
+
return false;
|
63
|
+
} else if (incY == 0) {
|
64
|
+
rb_raise(rb_eArgError, "GEMV: Expected incY != 0\n");
|
65
|
+
return false;
|
66
|
+
}
|
67
|
+
|
68
|
+
// Quick return if possible
|
69
|
+
if (!M or !N or (*alpha == 0 and *beta == 1)) return true;
|
70
|
+
|
71
|
+
if (Trans == CblasNoTrans) {
|
72
|
+
lenX = N;
|
73
|
+
lenY = M;
|
74
|
+
} else {
|
75
|
+
lenX = M;
|
76
|
+
lenY = N;
|
77
|
+
}
|
78
|
+
|
79
|
+
if (incX > 0) kx = 0;
|
80
|
+
else kx = (lenX - 1) * -incX;
|
81
|
+
|
82
|
+
if (incY > 0) ky = 0;
|
83
|
+
else ky = (lenY - 1) * -incY;
|
84
|
+
|
85
|
+
// Start the operations. In this version, the elements of A are accessed sequentially with one pass through A.
|
86
|
+
if (*beta != 1) {
|
87
|
+
if (incY == 1) {
|
88
|
+
if (*beta == 0) {
|
89
|
+
for (i = 0; i < lenY; ++i) {
|
90
|
+
Y[i] = 0;
|
91
|
+
}
|
92
|
+
} else {
|
93
|
+
for (i = 0; i < lenY; ++i) {
|
94
|
+
Y[i] *= *beta;
|
95
|
+
}
|
96
|
+
}
|
97
|
+
} else {
|
98
|
+
iy = ky;
|
99
|
+
if (*beta == 0) {
|
100
|
+
for (i = 0; i < lenY; ++i) {
|
101
|
+
Y[iy] = 0;
|
102
|
+
iy += incY;
|
103
|
+
}
|
104
|
+
} else {
|
105
|
+
for (i = 0; i < lenY; ++i) {
|
106
|
+
Y[iy] *= *beta;
|
107
|
+
iy += incY;
|
108
|
+
}
|
109
|
+
}
|
110
|
+
}
|
111
|
+
}
|
112
|
+
|
113
|
+
if (*alpha == 0) return false;
|
114
|
+
|
115
|
+
if (Trans == CblasNoTrans) {
|
116
|
+
|
117
|
+
// Form y := alpha*A*x + y.
|
118
|
+
jx = kx;
|
119
|
+
if (incY == 1) {
|
120
|
+
for (j = 0; j < N; ++j) {
|
121
|
+
if (X[jx] != 0) {
|
122
|
+
temp = *alpha * X[jx];
|
123
|
+
for (i = 0; i < M; ++i) {
|
124
|
+
Y[i] += A[j+i*lda] * temp;
|
125
|
+
}
|
126
|
+
}
|
127
|
+
jx += incX;
|
128
|
+
}
|
129
|
+
} else {
|
130
|
+
for (j = 0; j < N; ++j) {
|
131
|
+
if (X[jx] != 0) {
|
132
|
+
temp = *alpha * X[jx];
|
133
|
+
iy = ky;
|
134
|
+
for (i = 0; i < M; ++i) {
|
135
|
+
Y[iy] += A[j+i*lda] * temp;
|
136
|
+
iy += incY;
|
137
|
+
}
|
138
|
+
}
|
139
|
+
jx += incX;
|
140
|
+
}
|
141
|
+
}
|
142
|
+
|
143
|
+
} else { // TODO: Check that indices are correct! They're switched for C.
|
144
|
+
|
145
|
+
// Form y := alpha*A**DType*x + y.
|
146
|
+
jy = ky;
|
147
|
+
|
148
|
+
if (incX == 1) {
|
149
|
+
for (j = 0; j < N; ++j) {
|
150
|
+
temp = 0;
|
151
|
+
for (i = 0; i < M; ++i) {
|
152
|
+
temp += A[j+i*lda]*X[j];
|
153
|
+
}
|
154
|
+
Y[jy] += *alpha * temp;
|
155
|
+
jy += incY;
|
156
|
+
}
|
157
|
+
} else {
|
158
|
+
for (j = 0; j < N; ++j) {
|
159
|
+
temp = 0;
|
160
|
+
ix = kx;
|
161
|
+
for (i = 0; i < M; ++i) {
|
162
|
+
temp += A[j+i*lda] * X[ix];
|
163
|
+
ix += incX;
|
164
|
+
}
|
165
|
+
|
166
|
+
Y[jy] += *alpha * temp;
|
167
|
+
jy += incY;
|
168
|
+
}
|
169
|
+
}
|
170
|
+
}
|
171
|
+
|
172
|
+
return true;
|
173
|
+
} // end of GEMV
|
174
|
+
|
175
|
+
|
176
|
+
}} // end of namespace nm::math
|
177
|
+
|
178
|
+
#endif // GEMM_H
|
@@ -0,0 +1,255 @@
|
|
1
|
+
/////////////////////////////////////////////////////////////////////
|
2
|
+
// = NMatrix
|
3
|
+
//
|
4
|
+
// A linear algebra library for scientific computation in Ruby.
|
5
|
+
// NMatrix is part of SciRuby.
|
6
|
+
//
|
7
|
+
// NMatrix was originally inspired by and derived from NArray, by
|
8
|
+
// Masahiro Tanaka: http://narray.rubyforge.org
|
9
|
+
//
|
10
|
+
// == Copyright Information
|
11
|
+
//
|
12
|
+
// SciRuby is Copyright (c) 2010 - 2014, Ruby Science Foundation
|
13
|
+
// NMatrix is Copyright (c) 2012 - 2014, John Woods and the Ruby Science Foundation
|
14
|
+
//
|
15
|
+
// Please see LICENSE.txt for additional copyright notices.
|
16
|
+
//
|
17
|
+
// == Contributing
|
18
|
+
//
|
19
|
+
// By contributing source code to SciRuby, you agree to be bound by
|
20
|
+
// our Contributor Agreement:
|
21
|
+
//
|
22
|
+
// * https://github.com/SciRuby/sciruby/wiki/Contributor-Agreement
|
23
|
+
//
|
24
|
+
// == getrf.h
|
25
|
+
//
|
26
|
+
// getrf function in native C++.
|
27
|
+
//
|
28
|
+
|
29
|
+
/*
|
30
|
+
* Automatically Tuned Linear Algebra Software v3.8.4
|
31
|
+
* (C) Copyright 1999 R. Clint Whaley
|
32
|
+
*
|
33
|
+
* Redistribution and use in source and binary forms, with or without
|
34
|
+
* modification, are permitted provided that the following conditions
|
35
|
+
* are met:
|
36
|
+
* 1. Redistributions of source code must retain the above copyright
|
37
|
+
* notice, this list of conditions and the following disclaimer.
|
38
|
+
* 2. Redistributions in binary form must reproduce the above copyright
|
39
|
+
* notice, this list of conditions, and the following disclaimer in the
|
40
|
+
* documentation and/or other materials provided with the distribution.
|
41
|
+
* 3. The name of the ATLAS group or the names of its contributers may
|
42
|
+
* not be used to endorse or promote products derived from this
|
43
|
+
* software without specific written permission.
|
44
|
+
*
|
45
|
+
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
|
46
|
+
* ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED
|
47
|
+
* TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
|
48
|
+
* PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE ATLAS GROUP OR ITS CONTRIBUTORS
|
49
|
+
* BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
|
50
|
+
* CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
|
51
|
+
* SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
|
52
|
+
* INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
|
53
|
+
* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
|
54
|
+
* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
|
55
|
+
* POSSIBILITY OF SUCH DAMAGE.
|
56
|
+
*
|
57
|
+
*/
|
58
|
+
|
59
|
+
#ifndef GETRF_H
|
60
|
+
#define GETRF_H
|
61
|
+
|
62
|
+
#include "math/laswp.h"
|
63
|
+
#include "math/math.h"
|
64
|
+
#include "math/trsm.h"
|
65
|
+
#include "math/gemm.h"
|
66
|
+
#include "math/imax.h"
|
67
|
+
#include "math/scal.h"
|
68
|
+
|
69
|
+
namespace nm { namespace math {
|
70
|
+
|
71
|
+
/* Numeric inverse -- usually just 1 / f, but a little more complicated for complex. */
|
72
|
+
template <typename DType>
|
73
|
+
inline DType numeric_inverse(const DType& n) {
|
74
|
+
return n.inverse();
|
75
|
+
}
|
76
|
+
template <> inline float numeric_inverse(const float& n) { return 1 / n; }
|
77
|
+
template <> inline double numeric_inverse(const double& n) { return 1 / n; }
|
78
|
+
|
79
|
+
/*
|
80
|
+
* Templated version of row-order and column-order getrf, derived from ATL_getrfR.c (from ATLAS 3.8.0).
|
81
|
+
*
|
82
|
+
* 1. Row-major factorization of form
|
83
|
+
* A = L * U * P
|
84
|
+
* where P is a column-permutation matrix, L is lower triangular (lower
|
85
|
+
* trapazoidal if M > N), and U is upper triangular with unit diagonals (upper
|
86
|
+
* trapazoidal if M < N). This is the recursive Level 3 BLAS version.
|
87
|
+
*
|
88
|
+
* 2. Column-major factorization of form
|
89
|
+
* A = P * L * U
|
90
|
+
* where P is a row-permutation matrix, L is lower triangular with unit diagonal
|
91
|
+
* elements (lower trapazoidal if M > N), and U is upper triangular (upper
|
92
|
+
* trapazoidal if M < N). This is the recursive Level 3 BLAS version.
|
93
|
+
*
|
94
|
+
* Template argument determines whether 1 or 2 is utilized.
|
95
|
+
*/
|
96
|
+
template <bool RowMajor, typename DType>
|
97
|
+
inline int getrf_nothrow(const int M, const int N, DType* A, const int lda, int* ipiv) {
|
98
|
+
const int MN = std::min(M, N);
|
99
|
+
int ierr = 0;
|
100
|
+
|
101
|
+
// Symbols used by ATLAS in the several versions of this function:
|
102
|
+
// Row Col Us
|
103
|
+
// Nup Nleft N_ul
|
104
|
+
// Ndown Nright N_dr
|
105
|
+
// We're going to use N_ul, N_dr
|
106
|
+
|
107
|
+
DType neg_one = -1, one = 1;
|
108
|
+
|
109
|
+
if (MN > 1) {
|
110
|
+
int N_ul = MN >> 1;
|
111
|
+
|
112
|
+
// FIXME: Figure out how ATLAS #defines NB
|
113
|
+
#ifdef NB
|
114
|
+
if (N_ul > NB) N_ul = ATL_MulByNB(ATL_DivByNB(N_ul));
|
115
|
+
#endif
|
116
|
+
|
117
|
+
int N_dr;
|
118
|
+
if (RowMajor) {
|
119
|
+
N_dr = M - N_ul;
|
120
|
+
} else {
|
121
|
+
N_dr = N - N_ul;
|
122
|
+
}
|
123
|
+
|
124
|
+
int i = RowMajor ? getrf_nothrow<true,DType>(N_ul, N, A, lda, ipiv) : getrf_nothrow<false,DType>(M, N_ul, A, lda, ipiv);
|
125
|
+
|
126
|
+
if (i) if (!ierr) ierr = i;
|
127
|
+
|
128
|
+
DType *Ar, *Ac, *An;
|
129
|
+
if (RowMajor) {
|
130
|
+
Ar = &(A[N_ul * lda]),
|
131
|
+
Ac = &(A[N_ul]);
|
132
|
+
An = &(Ar[N_ul]);
|
133
|
+
|
134
|
+
nm::math::laswp<DType>(N_dr, Ar, lda, 0, N_ul, ipiv, 1);
|
135
|
+
|
136
|
+
nm::math::trsm<DType>(CblasRowMajor, CblasRight, CblasUpper, CblasNoTrans, CblasUnit, N_dr, N_ul, one, A, lda, Ar, lda);
|
137
|
+
nm::math::gemm<DType>(CblasRowMajor, CblasNoTrans, CblasNoTrans, N_dr, N-N_ul, N_ul, &neg_one, Ar, lda, Ac, lda, &one, An, lda);
|
138
|
+
|
139
|
+
i = getrf_nothrow<true,DType>(N_dr, N-N_ul, An, lda, ipiv+N_ul);
|
140
|
+
} else {
|
141
|
+
Ar = NULL;
|
142
|
+
Ac = &(A[N_ul * lda]);
|
143
|
+
An = &(Ac[N_ul]);
|
144
|
+
|
145
|
+
nm::math::laswp<DType>(N_dr, Ac, lda, 0, N_ul, ipiv, 1);
|
146
|
+
|
147
|
+
nm::math::trsm<DType>(CblasColMajor, CblasLeft, CblasLower, CblasNoTrans, CblasUnit, N_ul, N_dr, one, A, lda, Ac, lda);
|
148
|
+
nm::math::gemm<DType>(CblasColMajor, CblasNoTrans, CblasNoTrans, M-N_ul, N_dr, N_ul, &neg_one, &(A[N_ul]), lda, Ac, lda, &one, An, lda);
|
149
|
+
|
150
|
+
i = getrf_nothrow<false,DType>(M-N_ul, N_dr, An, lda, ipiv+N_ul);
|
151
|
+
}
|
152
|
+
|
153
|
+
if (i) if (!ierr) ierr = N_ul + i;
|
154
|
+
|
155
|
+
for (i = N_ul; i != MN; i++) {
|
156
|
+
ipiv[i] += N_ul;
|
157
|
+
}
|
158
|
+
|
159
|
+
nm::math::laswp<DType>(N_ul, A, lda, N_ul, MN, ipiv, 1); /* apply pivots */
|
160
|
+
|
161
|
+
} else if (MN == 1) { // there's another case for the colmajor version, but it doesn't seem to be necessary.
|
162
|
+
|
163
|
+
int i;
|
164
|
+
if (RowMajor) {
|
165
|
+
i = *ipiv = nm::math::imax<DType>(N, A, 1); // cblas_iamax(N, A, 1);
|
166
|
+
} else {
|
167
|
+
i = *ipiv = nm::math::imax<DType>(M, A, 1);
|
168
|
+
}
|
169
|
+
|
170
|
+
DType tmp = A[i];
|
171
|
+
if (tmp != 0) {
|
172
|
+
|
173
|
+
nm::math::scal<DType>((RowMajor ? N : M), nm::math::numeric_inverse(tmp), A, 1);
|
174
|
+
A[i] = *A;
|
175
|
+
*A = tmp;
|
176
|
+
|
177
|
+
} else ierr = 1;
|
178
|
+
|
179
|
+
}
|
180
|
+
return(ierr);
|
181
|
+
}
|
182
|
+
|
183
|
+
|
184
|
+
/*
|
185
|
+
* From ATLAS 3.8.0:
|
186
|
+
*
|
187
|
+
* Computes one of two LU factorizations based on the setting of the Order
|
188
|
+
* parameter, as follows:
|
189
|
+
* ----------------------------------------------------------------------------
|
190
|
+
* Order == CblasColMajor
|
191
|
+
* Column-major factorization of form
|
192
|
+
* A = P * L * U
|
193
|
+
* where P is a row-permutation matrix, L is lower triangular with unit
|
194
|
+
* diagonal elements (lower trapazoidal if M > N), and U is upper triangular
|
195
|
+
* (upper trapazoidal if M < N).
|
196
|
+
*
|
197
|
+
* ----------------------------------------------------------------------------
|
198
|
+
* Order == CblasRowMajor
|
199
|
+
* Row-major factorization of form
|
200
|
+
* A = P * L * U
|
201
|
+
* where P is a column-permutation matrix, L is lower triangular (lower
|
202
|
+
* trapazoidal if M > N), and U is upper triangular with unit diagonals (upper
|
203
|
+
* trapazoidal if M < N).
|
204
|
+
*
|
205
|
+
* ============================================================================
|
206
|
+
* Let IERR be the return value of the function:
|
207
|
+
* If IERR == 0, successful exit.
|
208
|
+
* If (IERR < 0) the -IERR argument had an illegal value
|
209
|
+
* If (IERR > 0 && Order == CblasColMajor)
|
210
|
+
* U(i-1,i-1) is exactly zero. The factorization has been completed,
|
211
|
+
* but the factor U is exactly singular, and division by zero will
|
212
|
+
* occur if it is used to solve a system of equations.
|
213
|
+
* If (IERR > 0 && Order == CblasRowMajor)
|
214
|
+
* L(i-1,i-1) is exactly zero. The factorization has been completed,
|
215
|
+
* but the factor L is exactly singular, and division by zero will
|
216
|
+
* occur if it is used to solve a system of equations.
|
217
|
+
*/
|
218
|
+
template <typename DType>
|
219
|
+
inline int getrf(const enum CBLAS_ORDER Order, const int M, const int N, DType* A, int lda, int* ipiv) {
|
220
|
+
if (Order == CblasRowMajor) {
|
221
|
+
if (lda < std::max(1,N)) {
|
222
|
+
rb_raise(rb_eArgError, "GETRF: lda must be >= MAX(N,1): lda=%d N=%d", lda, N);
|
223
|
+
return -6;
|
224
|
+
}
|
225
|
+
|
226
|
+
return getrf_nothrow<true,DType>(M, N, A, lda, ipiv);
|
227
|
+
} else {
|
228
|
+
if (lda < std::max(1,M)) {
|
229
|
+
rb_raise(rb_eArgError, "GETRF: lda must be >= MAX(M,1): lda=%d M=%d", lda, M);
|
230
|
+
return -6;
|
231
|
+
}
|
232
|
+
|
233
|
+
return getrf_nothrow<false,DType>(M, N, A, lda, ipiv);
|
234
|
+
//rb_raise(rb_eNotImpError, "column major getrf not implemented");
|
235
|
+
}
|
236
|
+
}
|
237
|
+
|
238
|
+
|
239
|
+
|
240
|
+
/*
|
241
|
+
* Function signature conversion for calling LAPACK's getrf functions as directly as possible.
|
242
|
+
*
|
243
|
+
* For documentation: http://www.netlib.org/lapack/double/dgetrf.f
|
244
|
+
*
|
245
|
+
* This function should normally go in math.cpp, but we need it to be available to nmatrix.cpp.
|
246
|
+
*/
|
247
|
+
template <typename DType>
|
248
|
+
inline int clapack_getrf(const enum CBLAS_ORDER order, const int m, const int n, void* a, const int lda, int* ipiv) {
|
249
|
+
return getrf<DType>(order, m, n, reinterpret_cast<DType*>(a), lda, ipiv);
|
250
|
+
}
|
251
|
+
|
252
|
+
|
253
|
+
} } // end nm::math
|
254
|
+
|
255
|
+
#endif
|