niso-jats 0.1.1

data/lib/niso/jats/front_stub.rb

@@ -0,0 +1,108 @@
+# frozen_string_literal: true
+
+module Niso
+  module Jats
+    class FrontStub < Lutaml::Model::Serializable
+      attribute :id, :string
+      attribute :article_id, ArticleId, collection: true
+      attribute :article_version, ArticleVersion
+      attribute :article_version_alternatives, ArticleVersionAlternatives
+      attribute :article_categories, ArticleCategories
+      attribute :title_group, TitleGroup
+      attribute :contrib_group, ContribGroup, collection: true
+      attribute :aff, Aff, collection: true
+      attribute :aff_alternatives, AffAlternatives, collection: true
+      attribute :author_notes, AuthorNotes
+      attribute :pub_date, PubDate, collection: true
+      attribute :pub_date_not_available, PubDateNotAvailable
+      attribute :volume, Volume, collection: true
+      attribute :volume_id, VolumeId, collection: true
+      attribute :volume_series, VolumeSeries
+      attribute :issue, Issue, collection: true
+      attribute :issue_id, IssueId, collection: true
+      attribute :issue_title, IssueTitle, collection: true
+      attribute :issue_title_group, IssueTitleGroup, collection: true
+      attribute :issue_sponsor, IssueSponsor, collection: true
+      attribute :issue_part, IssuePart
+      attribute :volume_issue_group, VolumeIssueGroup, collection: true
+      attribute :isbn, Isbn, collection: true
+      attribute :supplement, Supplement
+      attribute :fpage, Fpage
+      attribute :lpage, Lpage
+      attribute :page_range, PageRange
+      attribute :elocation_id, ElocationId
+      attribute :email, Email, collection: true
+      attribute :ext_link, ExtLink, collection: true
+      attribute :uri, Uri, collection: true
+      attribute :product, Product, collection: true
+      attribute :supplementary_material, SupplementaryMaterial, collection: true
+      attribute :history, History
+      attribute :pub_history, PubHistory
+      attribute :permissions, Permissions
+      attribute :self_uri, SelfUri, collection: true
+      attribute :related_article, RelatedArticle, collection: true
+      attribute :related_object, RelatedObject, collection: true
+      attribute :abstract, Abstract, collection: true
+      attribute :trans_abstract, TransAbstract, collection: true
+      attribute :kwd_group, KwdGroup, collection: true
+      attribute :funding_group, FundingGroup, collection: true
+      attribute :support_group, SupportGroup, collection: true
+      attribute :conference, Conference, collection: true
+      attribute :counts, Counts
+      attribute :custom_meta_group, CustomMetaGroup
+
+      xml do
+        root "front-stub"
+
+        map_attribute "id", to: :id
+        map_element "article-id", to: :article_id
+        map_element "article-version", to: :article_version
+        map_element "article-version-alternatives",
+                    to: :article_version_alternatives
+        map_element "article-categories", to: :article_categories
+        map_element "title-group", to: :title_group
+        map_element "contrib-group", to: :contrib_group
+        map_element "aff", to: :aff
+        map_element "aff-alternatives", to: :aff_alternatives
+        map_element "author-notes", to: :author_notes
+        map_element "pub-date", to: :pub_date
+        map_element "pub-date-not-available", to: :pub_date_not_available
+        map_element "volume", to: :volume
+        map_element "volume-id", to: :volume_id
+        map_element "volume-series", to: :volume_series
+        map_element "issue", to: :issue
+        map_element "issue-id", to: :issue_id
+        map_element "issue-title", to: :issue_title
+        map_element "issue-title-group", to: :issue_title_group
+        map_element "issue-sponsor", to: :issue_sponsor
+        map_element "issue-part", to: :issue_part
+        map_element "volume-issue-group", to: :volume_issue_group
+        map_element "isbn", to: :isbn
+        map_element "supplement", to: :supplement
+        map_element "fpage", to: :fpage
+        map_element "lpage", to: :lpage
+        map_element "page-range", to: :page_range
+        map_element "elocation-id", to: :elocation_id
+        map_element "email", to: :email
+        map_element "ext-link", to: :ext_link
+        map_element "uri", to: :uri
+        map_element "product", to: :product
+        map_element "supplementary-material", to: :supplementary_material
+        map_element "history", to: :history
+        map_element "pub-history", to: :pub_history
+        map_element "permissions", to: :permissions
+        map_element "self-uri", to: :self_uri
+        map_element "related-article", to: :related_article
+        map_element "related-object", to: :related_object
+        map_element "abstract", to: :abstract
+        map_element "trans-abstract", to: :trans_abstract
+        map_element "kwd-group", to: :kwd_group
+        map_element "funding-group", to: :funding_group
+        map_element "support-group", to: :support_group
+        map_element "conference", to: :conference
+        map_element "counts", to: :counts
+        map_element "custom-meta-group", to: :custom_meta_group
+      end
+    end
+  end
+end

data/lib/niso/jats/funding_group.rb

@@ -0,0 +1,25 @@
+# frozen_string_literal: true
+
+module Niso
+  module Jats
+    class FundingGroup < Lutaml::Model::Serializable
+      attribute :id, :string
+      attribute :specific_use, :string
+      attribute :lang, :string
+      attribute :award_group, AwardGroup, collection: true
+      attribute :funding_statement, FundingStatement, collection: true
+      attribute :open_access, OpenAccess, collection: true
+
+      xml do
+        root "funding-group"
+
+        map_attribute "id", to: :id
+        map_attribute "specific-use", to: :specific_use
+        map_attribute "lang", to: :lang, namespace: "http://www.w3.org/XML/1998/namespace", prefix: "xml"
+        map_element "award-group", to: :award_group
+        map_element "funding-statement", to: :funding_statement
+        map_element "open-access", to: :open_access
+      end
+    end
+  end
+end

data/lib/niso/jats/funding_source.rb

@@ -0,0 +1,85 @@
+# frozen_string_literal: true
+
+module Niso
+  module Jats
+    class FundingSource < Lutaml::Model::Serializable
+      attribute :content, :string
+      attribute :country, :string
+      attribute :hreflang, :string
+      attribute :id, :string
+      attribute :rid, :string
+      attribute :source_type, :string
+      attribute :specific_use, :string
+      attribute :lang, :string
+      attribute :bold, Bold, collection: true
+      attribute :fixed_case, FixedCase, collection: true
+      attribute :italic, Italic, collection: true
+      attribute :monospace, Monospace, collection: true
+      attribute :overline, Overline, collection: true
+      attribute :roman, Roman, collection: true
+      attribute :sans_serif, SansSerif, collection: true
+      attribute :sc, Sc, collection: true
+      attribute :strike, Strike, collection: true
+      attribute :underline, Underline, collection: true
+      attribute :ruby, Ruby, collection: true
+      attribute :alternatives, Alternatives, collection: true
+      attribute :inline_graphic, InlineGraphic, collection: true
+      attribute :inline_media, InlineMedia, collection: true
+      attribute :private_char, PrivateChar, collection: true
+      attribute :chem_struct, ChemStruct, collection: true
+      attribute :inline_formula, InlineFormula, collection: true
+      attribute :abbrev, Abbrev, collection: true
+      attribute :index_term, IndexTerm, collection: true
+      attribute :index_term_range_end, IndexTermRangeEnd, collection: true
+      attribute :milestone_end, MilestoneEnd, collection: true
+      attribute :milestone_start, MilestoneStart, collection: true
+      attribute :named_content, NamedContent, collection: true
+      attribute :styled_content, StyledContent, collection: true
+      attribute :sub, Sub, collection: true
+      attribute :sup, Sup, collection: true
+      attribute :institution, Institution, collection: true
+      attribute :institution_wrap, InstitutionWrap, collection: true
+
+      xml do
+        root "funding-source", mixed: true
+
+        map_content to: :content
+        map_attribute "country", to: :country
+        map_attribute "hreflang", to: :hreflang
+        map_attribute "id", to: :id
+        map_attribute "rid", to: :rid
+        map_attribute "source-type", to: :source_type
+        map_attribute "specific-use", to: :specific_use
+        map_attribute "lang", to: :lang, namespace: "http://www.w3.org/XML/1998/namespace", prefix: "xml"
+        map_element "bold", to: :bold
+        map_element "fixed-case", to: :fixed_case
+        map_element "italic", to: :italic
+        map_element "monospace", to: :monospace
+        map_element "overline", to: :overline
+        map_element "roman", to: :roman
+        map_element "sans-serif", to: :sans_serif
+        map_element "sc", to: :sc
+        map_element "strike", to: :strike
+        map_element "underline", to: :underline
+        map_element "ruby", to: :ruby
+        map_element "alternatives", to: :alternatives
+        map_element "inline-graphic", to: :inline_graphic
+        map_element "inline-media", to: :inline_media
+        map_element "private-char", to: :private_char
+        map_element "chem-struct", to: :chem_struct
+        map_element "inline-formula", to: :inline_formula
+        map_element "abbrev", to: :abbrev
+        map_element "index-term", to: :index_term
+        map_element "index-term-range-end", to: :index_term_range_end
+        map_element "milestone-end", to: :milestone_end
+        map_element "milestone-start", to: :milestone_start
+        map_element "named-content", to: :named_content
+        map_element "styled-content", to: :styled_content
+        map_element "sub", to: :sub
+        map_element "sup", to: :sup
+        map_element "institution", to: :institution
+        map_element "institution-wrap", to: :institution_wrap
+      end
+    end
+  end
+end

data/lib/niso/jats/funding_statement.rb

@@ -0,0 +1,59 @@
+# frozen_string_literal: true
+
+module Niso
+  module Jats
+    class FundingStatement < Lutaml::Model::Serializable
+      attribute :content, :string
+      attribute :id, :string
+      attribute :rid, :string
+      attribute :specific_use, :string
+      attribute :lang, :string
+      attribute :email, Email, collection: true
+      attribute :ext_link, ExtLink, collection: true
+      attribute :uri, Uri, collection: true
+      attribute :bold, Bold, collection: true
+      attribute :fixed_case, FixedCase, collection: true
+      attribute :italic, Italic, collection: true
+      attribute :monospace, Monospace, collection: true
+      attribute :overline, Overline, collection: true
+      attribute :roman, Roman, collection: true
+      attribute :sans_serif, SansSerif, collection: true
+      attribute :sc, Sc, collection: true
+      attribute :strike, Strike, collection: true
+      attribute :underline, Underline, collection: true
+      attribute :ruby, Ruby, collection: true
+      attribute :named_content, NamedContent, collection: true
+      attribute :styled_content, StyledContent, collection: true
+      attribute :sub, Sub, collection: true
+      attribute :sup, Sup, collection: true
+
+      xml do
+        root "funding-statement"
+
+        map_content to: :content
+        map_attribute "id", to: :id
+        map_attribute "rid", to: :rid
+        map_attribute "specific-use", to: :specific_use
+        map_attribute "lang", to: :lang, namespace: "http://www.w3.org/XML/1998/namespace", prefix: "xml"
+        map_element "email", to: :email
+        map_element "ext-link", to: :ext_link
+        map_element "uri", to: :uri
+        map_element "bold", to: :bold
+        map_element "fixed-case", to: :fixed_case
+        map_element "italic", to: :italic
+        map_element "monospace", to: :monospace
+        map_element "overline", to: :overline
+        map_element "roman", to: :roman
+        map_element "sans-serif", to: :sans_serif
+        map_element "sc", to: :sc
+        map_element "strike", to: :strike
+        map_element "underline", to: :underline
+        map_element "ruby", to: :ruby
+        map_element "named-content", to: :named_content
+        map_element "styled-content", to: :styled_content
+        map_element "sub", to: :sub
+        map_element "sup", to: :sup
+      end
+    end
+  end
+end

data/lib/niso/jats/given_names.rb

@@ -0,0 +1,19 @@
+# frozen_string_literal: true
+
+module Niso
+  module Jats
+    class GivenNames < Lutaml::Model::Serializable
+      attribute :content, :string
+      attribute :id, :string
+      attribute :initials, :string
+
+      xml do
+        root "given-names"
+
+        map_content to: :content
+        map_attribute "id", to: :id
+        map_attribute "initials", to: :initials
+      end
+    end
+  end
+end

data/lib/niso/jats/glossary.rb

@@ -0,0 +1,97 @@
+# frozen_string_literal: true
+
+module Niso
+  module Jats
+    class Glossary < Lutaml::Model::Serializable
+      attribute :content_type, :string
+      attribute :id, :string
+      attribute :specific_use, :string
+      attribute :lang, :string
+      attribute :object_id, ObjectId, collection: true
+      attribute :label, Label
+      attribute :title, Title
+      attribute :address, Address, collection: true
+      attribute :alternatives, Alternatives, collection: true
+      attribute :answer, Answer, collection: true
+      attribute :answer_set, AnswerSet, collection: true
+      attribute :array, Array, collection: true
+      attribute :block_alternatives, BlockAlternatives, collection: true
+      attribute :boxed_text, BoxedText, collection: true
+      attribute :chem_struct_wrap, ChemStructWrap, collection: true
+      attribute :code, Code, collection: true
+      attribute :explanation, Explanation, collection: true
+      attribute :fig, Fig, collection: true
+      attribute :fig_group, FigGroup, collection: true
+      attribute :graphic, Graphic, collection: true
+      attribute :media, Media, collection: true
+      attribute :preformat, Preformat, collection: true
+      attribute :question, Question, collection: true
+      attribute :question_wrap, QuestionWrap, collection: true
+      attribute :question_wrap_group, QuestionWrapGroup, collection: true
+      attribute :supplementary_material, SupplementaryMaterial, collection: true
+      attribute :table_wrap, TableWrap, collection: true
+      attribute :table_wrap_group, TableWrapGroup, collection: true
+      attribute :disp_formula, DispFormula, collection: true
+      attribute :disp_formula_group, DispFormulaGroup, collection: true
+      attribute :def_list, DefList, collection: true
+      attribute :list, List, collection: true
+      attribute :tex_math, TexMath, collection: true
+      attribute :mml_math, :string, collection: true
+      attribute :p, Paragraph, collection: true
+      attribute :related_article, RelatedArticle, collection: true
+      attribute :related_object, RelatedObject, collection: true
+      attribute :disp_quote, DispQuote, collection: true
+      attribute :speech, Speech, collection: true
+      attribute :statement, Statement, collection: true
+      attribute :verse_group, VerseGroup, collection: true
+      attribute :glossary, Glossary, collection: true
+
+      xml do
+        root "glossary"
+
+        map_attribute "content-type", to: :content_type
+        map_attribute "id", to: :id
+        map_attribute "specific-use", to: :specific_use
+        map_attribute "lang", to: :lang, namespace: "http://www.w3.org/XML/1998/namespace", prefix: "xml"
+        map_element "object-id", to: :object_id
+        map_element "label", to: :label
+        map_element "title", to: :title
+        map_element "address", to: :address
+        map_element "alternatives", to: :alternatives
+        map_element "answer", to: :answer
+        map_element "answer-set", to: :answer_set
+        map_element "array", to: :array
+        map_element "block-alternatives", to: :block_alternatives
+        map_element "boxed-text", to: :boxed_text
+        map_element "chem-struct-wrap", to: :chem_struct_wrap
+        map_element "code", to: :code
+        map_element "explanation", to: :explanation
+        map_element "fig", to: :fig
+        map_element "fig-group", to: :fig_group
+        map_element "graphic", to: :graphic
+        map_element "media", to: :media
+        map_element "preformat", to: :preformat
+        map_element "question", to: :question
+        map_element "question-wrap", to: :question_wrap
+        map_element "question-wrap-group", to: :question_wrap_group
+        map_element "supplementary-material", to: :supplementary_material
+        map_element "table-wrap", to: :table_wrap
+        map_element "table-wrap-group", to: :table_wrap_group
+        map_element "disp-formula", to: :disp_formula
+        map_element "disp-formula-group", to: :disp_formula_group
+        map_element "def-list", to: :def_list
+        map_element "list", to: :list
+        map_element "tex-math", to: :tex_math
+        map_element "mml-math", to: :mml_math
+        map_element "p", to: :p
+        map_element "related-article", to: :related_article
+        map_element "related-object", to: :related_object
+        map_element "disp-quote", to: :disp_quote
+        map_element "speech", to: :speech
+        map_element "statement", to: :statement
+        map_element "verse-group", to: :verse_group
+        map_element "glossary", to: :glossary
+      end
+    end
+  end
+end

data/lib/niso/jats/glyph_data.rb

@@ -0,0 +1,29 @@
+# frozen_string_literal: true
+
+module Niso
+  module Jats
+    class GlyphData < Lutaml::Model::Serializable
+      attribute :content, :string
+      attribute :fontchar, :string
+      attribute :fontname, :string
+      attribute :format, :string
+      attribute :id, :string
+      attribute :resolution, :string
+      attribute :x_size, :string
+      attribute :y_size, :string
+
+      xml do
+        root "glyph-data"
+
+        map_content to: :content
+        map_attribute "fontchar", to: :fontchar
+        map_attribute "fontname", to: :fontname
+        map_attribute "format", to: :format
+        map_attribute "id", to: :id
+        map_attribute "resolution", to: :resolution
+        map_attribute "x-size", to: :x_size
+        map_attribute "y-size", to: :y_size
+      end
+    end
+  end
+end

data/lib/niso/jats/glyph_ref.rb

@@ -0,0 +1,17 @@
+# frozen_string_literal: true
+
+module Niso
+  module Jats
+    class GlyphRef < Lutaml::Model::Serializable
+      attribute :glyph_data, :string
+      attribute :id, :string
+
+      xml do
+        root "glyph-ref"
+
+        map_attribute "glyph-data", to: :glyph_data
+        map_attribute "id", to: :id
+      end
+    end
+  end
+end

data/lib/niso/jats/gov.rb

@@ -0,0 +1,53 @@
+# frozen_string_literal: true
+
+module Niso
+  module Jats
+    class Gov < Lutaml::Model::Serializable
+      attribute :content, :string
+      attribute :content_type, :string
+      attribute :id, :string
+      attribute :specific_use, :string
+      attribute :lang, :string
+      attribute :bold, Bold, collection: true
+      attribute :fixed_case, FixedCase, collection: true
+      attribute :italic, Italic, collection: true
+      attribute :monospace, Monospace, collection: true
+      attribute :overline, Overline, collection: true
+      attribute :roman, Roman, collection: true
+      attribute :sans_serif, SansSerif, collection: true
+      attribute :sc, Sc, collection: true
+      attribute :strike, Strike, collection: true
+      attribute :underline, Underline, collection: true
+      attribute :ruby, Ruby, collection: true
+      attribute :sub, Sub, collection: true
+      attribute :sup, Sup, collection: true
+      attribute :named_content, NamedContent, collection: true
+      attribute :styled_content, StyledContent, collection: true
+
+      xml do
+        root "gov"
+
+        map_content to: :content
+        map_attribute "content-type", to: :content_type
+        map_attribute "id", to: :id
+        map_attribute "specific-use", to: :specific_use
+        map_attribute "lang", to: :lang, namespace: "http://www.w3.org/XML/1998/namespace", prefix: "xml"
+        map_element "bold", to: :bold
+        map_element "fixed-case", to: :fixed_case
+        map_element "italic", to: :italic
+        map_element "monospace", to: :monospace
+        map_element "overline", to: :overline
+        map_element "roman", to: :roman
+        map_element "sans-serif", to: :sans_serif
+        map_element "sc", to: :sc
+        map_element "strike", to: :strike
+        map_element "underline", to: :underline
+        map_element "ruby", to: :ruby
+        map_element "sub", to: :sub
+        map_element "sup", to: :sup
+        map_element "named-content", to: :named_content
+        map_element "styled-content", to: :styled_content
+      end
+    end
+  end
+end

data/lib/niso/jats/graphic.rb

@@ -0,0 +1,61 @@
+# frozen_string_literal: true
+
+module Niso
+  module Jats
+    class Graphic < Lutaml::Model::Serializable
+      attribute :content_type, :string
+      attribute :href, :string
+      attribute :hreflang, :string
+      attribute :id, :string
+      attribute :mime_subtype, :string
+      attribute :mimetype, :string
+      attribute :orientation, :string, default: -> { "portrait" }
+      attribute :position, :string, default: -> { "float" }
+      attribute :specific_use, :string
+      attribute :lang, :string
+      attribute :alt_text, AltText, collection: true
+      attribute :long_desc, LongDesc, collection: true
+      attribute :abstract, Abstract, collection: true
+      attribute :email, Email, collection: true
+      attribute :ext_link, ExtLink, collection: true
+      attribute :uri, Uri, collection: true
+      attribute :caption, Caption, collection: true
+      attribute :attrib, Attrib, collection: true
+      attribute :permissions, Permissions, collection: true
+      attribute :object_id, ObjectId, collection: true
+      attribute :label, Label, collection: true
+      attribute :kwd_group, KwdGroup, collection: true
+      attribute :subj_group, SubjGroup, collection: true
+      attribute :xref, Xref, collection: true
+
+      xml do
+        root "graphic"
+
+        map_attribute "content-type", to: :content_type
+        map_attribute "href", to: :href, namespace: "http://www.w3.org/1999/xlink"
+        map_attribute "hreflang", to: :hreflang
+        map_attribute "id", to: :id
+        map_attribute "mime-subtype", to: :mime_subtype
+        map_attribute "mimetype", to: :mimetype
+        map_attribute "orientation", to: :orientation
+        map_attribute "position", to: :position
+        map_attribute "specific-use", to: :specific_use
+        map_attribute "lang", to: :lang, namespace: "http://www.w3.org/XML/1998/namespace", prefix: "xml"
+        map_element "alt-text", to: :alt_text
+        map_element "long-desc", to: :long_desc
+        map_element "abstract", to: :abstract
+        map_element "email", to: :email
+        map_element "ext-link", to: :ext_link
+        map_element "uri", to: :uri
+        map_element "caption", to: :caption
+        map_element "attrib", to: :attrib
+        map_element "permissions", to: :permissions
+        map_element "object-id", to: :object_id
+        map_element "label", to: :label
+        map_element "kwd-group", to: :kwd_group
+        map_element "subj-group", to: :subj_group
+        map_element "xref", to: :xref
+      end
+    end
+  end
+end

data/lib/niso/jats/history.rb

@@ -0,0 +1,17 @@
+# frozen_string_literal: true
+
+module Niso
+  module Jats
+    class History < Lutaml::Model::Serializable
+      attribute :id, :string
+      attribute :date, Date, collection: true
+
+      xml do
+        root "history"
+
+        map_attribute "id", to: :id
+        map_element "date", to: :date
+      end
+    end
+  end
+end

data/lib/niso/jats/hr.rb

@@ -0,0 +1,15 @@
+# frozen_string_literal: true
+
+module Niso
+  module Jats
+    class Hr < Lutaml::Model::Serializable
+      attribute :id, :string
+
+      xml do
+        root "hr"
+
+        map_attribute "id", to: :id
+      end
+    end
+  end
+end

data/lib/niso/jats/index_term.rb

@@ -0,0 +1,39 @@
+# frozen_string_literal: true
+
+module Niso
+  module Jats
+    class IndexTerm < Lutaml::Model::Serializable
+      attribute :content_type, :string
+      attribute :id, :string
+      attribute :index_type, :string
+      attribute :specific_use, :string
+      attribute :vocab, :string
+      attribute :vocab_identifier, :string
+      attribute :vocab_term, :string
+      attribute :vocab_term_identifier, :string
+      attribute :lang, :string
+      attribute :term, Term
+      attribute :index_term, IndexTerm
+      attribute :see, See, collection: true
+      attribute :see_also, SeeAlso, collection: true
+
+      xml do
+        root "index-term"
+
+        map_attribute "content-type", to: :content_type
+        map_attribute "id", to: :id
+        map_attribute "index-type", to: :index_type
+        map_attribute "specific-use", to: :specific_use
+        map_attribute "vocab", to: :vocab
+        map_attribute "vocab-identifier", to: :vocab_identifier
+        map_attribute "vocab-term", to: :vocab_term
+        map_attribute "vocab-term-identifier", to: :vocab_term_identifier
+        map_attribute "lang", to: :lang, namespace: "http://www.w3.org/XML/1998/namespace", prefix: "xml"
+        map_element "term", to: :term
+        map_element "index-term", to: :index_term
+        map_element "see", to: :see
+        map_element "see-also", to: :see_also
+      end
+    end
+  end
+end

data/lib/niso/jats/index_term_range_end.rb

@@ -0,0 +1,17 @@
+# frozen_string_literal: true
+
+module Niso
+  module Jats
+    class IndexTermRangeEnd < Lutaml::Model::Serializable
+      attribute :id, :string
+      attribute :rid, :string
+
+      xml do
+        root "index-term-range-end"
+
+        map_attribute "id", to: :id
+        map_attribute "rid", to: :rid
+      end
+    end
+  end
+end