neptune 0.1.4 → 0.2.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/README +4 -0
- data/bin/neptune +7 -0
- data/doc/AppControllerClient.html +113 -22
- data/doc/{Kernel.html → AppControllerException.html} +23 -55
- data/doc/BabelHelper.html +707 -0
- data/doc/BadConfigurationException.html +142 -0
- data/doc/CommonFunctions.html +121 -33
- data/doc/FileNotFoundException.html +142 -0
- data/doc/NeptuneHelper.html +1102 -0
- data/doc/Object.html +94 -749
- data/doc/bin/neptune.html +3 -1
- data/doc/created.rid +7 -5
- data/doc/index.html +73 -25
- data/doc/lib/app_controller_client_rb.html +1 -1
- data/doc/lib/babel_rb.html +68 -0
- data/doc/lib/common_functions_rb.html +3 -1
- data/doc/lib/custom_exceptions_rb.html +54 -0
- data/doc/lib/neptune_rb.html +3 -1
- data/lib/app_controller_client.rb +28 -10
- data/lib/babel.rb +260 -0
- data/lib/common_functions.rb +42 -28
- data/lib/custom_exceptions.rb +10 -0
- data/lib/neptune.rb +371 -304
- data/test/unit/test_app_controller_client.rb +9 -9
- data/test/unit/test_babel.rb +154 -0
- data/test/unit/test_common_functions.rb +39 -75
- data/test/unit/test_neptune.rb +168 -76
- data/test/unit/ts_all.rb +5 -0
- metadata +32 -8
data/doc/bin/neptune.html
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<div id="metadata">
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<dl>
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<dt class="modified-date">Last Modified</dt>
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<dd class="modified-date">Fri Feb 10 19:53:13 -0800 2012</dd>
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<dt class="requires">Requires</dt>
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<ul>
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<li>babel</li>
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<li>neptune</li>
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</ul>
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data/doc/created.rid
CHANGED
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bin/neptune
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lib/
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lib/
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lib/
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Sat, 11 Feb 2012 13:24:19 -0800
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bin/neptune Fri, 10 Feb 2012 19:53:13 -0800
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lib/babel.rb Sat, 11 Feb 2012 13:20:56 -0800
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lib/neptune.rb Sat, 11 Feb 2012 11:16:25 -0800
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lib/custom_exceptions.rb Sat, 31 Dec 2011 13:13:50 -0800
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lib/app_controller_client.rb Wed, 25 Jan 2012 12:07:13 -0800
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lib/common_functions.rb Sat, 11 Feb 2012 13:20:31 -0800
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data/doc/index.html
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<li class="class"><a href="AppControllerClient.html">AppControllerClient</a></li>
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<li class="class"><a href="AppControllerException.html">AppControllerException</a></li>
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<li class="module"><a href="BabelHelper.html">BabelHelper</a></li>
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<li class="class"><a href="BadConfigurationException.html">BadConfigurationException</a></li>
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<li class="class"><a href="FileNotFoundException.html">FileNotFoundException</a></li>
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<h2 id="methods">Methods</h2>
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<li><a href="NeptuneHelper.html#method-c-compile_code">::compile_code — NeptuneHelper</a></li>
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<li><a href="BabelHelper.html#method-c-convert_from_neptune_params">::convert_from_neptune_params — BabelHelper</a></li>
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<li><a href="BabelHelper.html#method-c-convert_to_neptune_params">::convert_to_neptune_params — BabelHelper</a></li>
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<li><a href="NeptuneHelper.html#method-c-do_preprocessing">::do_preprocessing — NeptuneHelper</a></li>
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<li><a href="BabelHelper.html#method-c-ensure_output_does_not_exist">::ensure_output_does_not_exist — BabelHelper</a></li>
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<li><a href="BabelHelper.html#method-c-generate_output_location">::generate_output_location — BabelHelper</a></li>
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<li><a href="BabelHelper.html#method-c-get_appcontroller">::get_appcontroller — BabelHelper</a></li>
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<li><a href="BabelHelper.html#method-c-get_bucket_for_local_data">::get_bucket_for_local_data — BabelHelper</a></li>
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<li><a href="CommonFunctions.html#method-c-get_from_yaml">::get_from_yaml — CommonFunctions</a></li>
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<li><a href="NeptuneHelper.html#method-c-get_input">::get_input — NeptuneHelper</a></li>
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<li><a href="NeptuneHelper.html#method-c-get_job_data">::get_job_data — NeptuneHelper</a></li>
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<li><a href="CommonFunctions.html#method-c-get_random_alphanumeric">::get_random_alphanumeric — CommonFunctions</a></li>
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<li><a href="CommonFunctions.html#method-c-get_secret_key">::get_secret_key — CommonFunctions</a></li>
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<li><a href="NeptuneHelper.html#method-c-get_std_out_and_err">::get_std_out_and_err — NeptuneHelper</a></li>
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<li><a href="AppControllerClient.html#method-c-new">::new — AppControllerClient</a></li>
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<li><a href="NeptuneHelper.html#method-c-preprocess_babel">::preprocess_babel — NeptuneHelper</a></li>
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<li><a href="NeptuneHelper.html#method-c-preprocess_compile">::preprocess_compile — NeptuneHelper</a></li>
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<li><a href="NeptuneHelper.html#method-c-preprocess_erlang">::preprocess_erlang — NeptuneHelper</a></li>
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<li><a href="NeptuneHelper.html#method-c-preprocess_mpi">::preprocess_mpi — NeptuneHelper</a></li>
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<li><a href="NeptuneHelper.html#method-c-preprocess_ssa">::preprocess_ssa — NeptuneHelper</a></li>
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<li><a href="NeptuneHelper.html#method-c-require_file_to_exist">::require_file_to_exist — NeptuneHelper</a></li>
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<li><a href="BabelHelper.html#method-c-run_job">::run_job — BabelHelper</a></li>
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<li><a href="CommonFunctions.html#method-c-shell">::shell — CommonFunctions</a></li>
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<li><a href="NeptuneHelper.html#method-c-upload_app_for_cicero">::upload_app_for_cicero — NeptuneHelper</a></li>
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<li><a href="BabelHelper.html#method-c-validate_inputs">::validate_inputs — BabelHelper</a></li>
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<dd class="modified-date">Sat Feb 11 13:20:56 -0800 2012</dd>
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</dl>
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<div class="description">
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<h2>Description</h2>
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<p>Programmer: Chris Bunch (cgb@cs.ucsb.edu)</p>
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<script src="../js/thickbox-compressed.js" type="text/javascript"
|
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16
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+
charset="utf-8"></script>
|
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17
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+
<script src="../js/quicksearch.js" type="text/javascript"
|
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18
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+
charset="utf-8"></script>
|
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19
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+
<script src="../js/darkfish.js" type="text/javascript"
|
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20
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+
charset="utf-8"></script>
|
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21
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+
</head>
|
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22
|
+
|
|
23
|
+
<body class="file file-popup">
|
|
24
|
+
<div id="metadata">
|
|
25
|
+
<dl>
|
|
26
|
+
<dt class="modified-date">Last Modified</dt>
|
|
27
|
+
<dd class="modified-date">Sat Dec 31 13:13:50 -0800 2011</dd>
|
|
28
|
+
|
|
29
|
+
|
|
30
|
+
<dt class="requires">Requires</dt>
|
|
31
|
+
<dd class="requires">
|
|
32
|
+
<ul>
|
|
33
|
+
|
|
34
|
+
</ul>
|
|
35
|
+
</dd>
|
|
36
|
+
|
|
37
|
+
|
|
38
|
+
|
|
39
|
+
</dl>
|
|
40
|
+
</div>
|
|
41
|
+
|
|
42
|
+
<div id="documentation">
|
|
43
|
+
|
|
44
|
+
<div class="description">
|
|
45
|
+
<h2>Description</h2>
|
|
46
|
+
|
|
47
|
+
<p>Programmer: Chris Bunch</p>
|
|
48
|
+
|
|
49
|
+
</div>
|
|
50
|
+
|
|
51
|
+
</div>
|
|
52
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+
</body>
|
|
53
|
+
</html>
|
|
54
|
+
|
data/doc/lib/neptune_rb.html
CHANGED
|
@@ -24,7 +24,7 @@
|
|
|
24
24
|
<div id="metadata">
|
|
25
25
|
<dl>
|
|
26
26
|
<dt class="modified-date">Last Modified</dt>
|
|
27
|
-
<dd class="modified-date">
|
|
27
|
+
<dd class="modified-date">Sat Feb 11 11:16:25 -0800 2012</dd>
|
|
28
28
|
|
|
29
29
|
|
|
30
30
|
<dt class="requires">Requires</dt>
|
|
@@ -35,6 +35,8 @@
|
|
|
35
35
|
|
|
36
36
|
<li>common_functions</li>
|
|
37
37
|
|
|
38
|
+
<li>custom_exceptions</li>
|
|
39
|
+
|
|
38
40
|
</ul>
|
|
39
41
|
</dd>
|
|
40
42
|
|
|
@@ -34,6 +34,8 @@ class AppControllerClient
|
|
|
34
34
|
@conn.add_method("neptune_get_acl", "job_data", "secret")
|
|
35
35
|
@conn.add_method("neptune_set_acl", "job_data", "secret")
|
|
36
36
|
@conn.add_method("neptune_compile_code", "job_data", "secret")
|
|
37
|
+
@conn.add_method("neptune_get_supported_babel_engines", "job_data", "secret")
|
|
38
|
+
@conn.add_method("neptune_does_file_exist", "file", "job_data", "secret")
|
|
37
39
|
end
|
|
38
40
|
|
|
39
41
|
# A helper method to make SOAP calls for us. This method is mainly here to
|
|
@@ -58,7 +60,7 @@ class AppControllerClient
|
|
|
58
60
|
if retry_on_except
|
|
59
61
|
retry
|
|
60
62
|
else
|
|
61
|
-
|
|
63
|
+
raise AppControllerException.new("Connection was refused. Is the AppController running?")
|
|
62
64
|
end
|
|
63
65
|
rescue OpenSSL::SSL::SSLError, NotImplementedError, Timeout::Error
|
|
64
66
|
retry
|
|
@@ -66,7 +68,7 @@ class AppControllerClient
|
|
|
66
68
|
if retry_on_except
|
|
67
69
|
retry
|
|
68
70
|
else
|
|
69
|
-
|
|
71
|
+
raise AppControllerException.new("We saw an unexpected error of the type #{except.class} with the following message:\n#{except}.")
|
|
70
72
|
end
|
|
71
73
|
end
|
|
72
74
|
end
|
|
@@ -75,7 +77,7 @@ class AppControllerClient
|
|
|
75
77
|
# or MapReduce), or a scaling job (e.g., for AppScale itself). This method
|
|
76
78
|
# should not be used for retrieving the output of a job or getting / setting
|
|
77
79
|
# output ACLs, but just for starting new HPC / scaling jobs. This method
|
|
78
|
-
# takes a hash containing the parameters of the job to run, and can
|
|
80
|
+
# takes a hash containing the parameters of the job to run, and can raise AppControllerException.new if
|
|
79
81
|
# the AppController it calls returns an error (e.g., if a bad secret is used
|
|
80
82
|
# or the machine isn't running). Otherwise, the return value of this method
|
|
81
83
|
# is the result returned from the AppController.
|
|
@@ -84,7 +86,7 @@ class AppControllerClient
|
|
|
84
86
|
make_call(NO_TIMEOUT, false) {
|
|
85
87
|
result = conn.neptune_start_job(job_data, @secret)
|
|
86
88
|
}
|
|
87
|
-
|
|
89
|
+
raise AppControllerException.new(result) if result =~ /Error:/
|
|
88
90
|
return result
|
|
89
91
|
end
|
|
90
92
|
|
|
@@ -98,7 +100,7 @@ class AppControllerClient
|
|
|
98
100
|
make_call(NO_TIMEOUT, false) {
|
|
99
101
|
result = conn.neptune_put_input(job_data, @secret)
|
|
100
102
|
}
|
|
101
|
-
|
|
103
|
+
raise AppControllerException.new(result) if result =~ /Error:/
|
|
102
104
|
return result
|
|
103
105
|
end
|
|
104
106
|
|
|
@@ -111,13 +113,13 @@ class AppControllerClient
|
|
|
111
113
|
# for non-trivial output jobs, the next version of Neptune will add an
|
|
112
114
|
# additional call to directly copy the output to a file on the local
|
|
113
115
|
# filesystem. See start_neptune_job for conditions by which this method
|
|
114
|
-
# can
|
|
116
|
+
# can raise AppControllerException.new as well as the input format used for job_data.
|
|
115
117
|
def get_output(job_data)
|
|
116
118
|
result = ""
|
|
117
119
|
make_call(NO_TIMEOUT, false) {
|
|
118
120
|
result = conn.neptune_get_output(job_data, @secret)
|
|
119
121
|
}
|
|
120
|
-
|
|
122
|
+
raise AppControllerException.new(result) if result =~ /Error:/
|
|
121
123
|
return result
|
|
122
124
|
end
|
|
123
125
|
|
|
@@ -131,7 +133,7 @@ class AppControllerClient
|
|
|
131
133
|
make_call(NO_TIMEOUT, false) {
|
|
132
134
|
result = conn.neptune_get_acl(job_data, @secret)
|
|
133
135
|
}
|
|
134
|
-
|
|
136
|
+
raise AppControllerException.new(result) if result =~ /Error:/
|
|
135
137
|
return result
|
|
136
138
|
end
|
|
137
139
|
|
|
@@ -145,7 +147,7 @@ class AppControllerClient
|
|
|
145
147
|
make_call(NO_TIMEOUT, false) {
|
|
146
148
|
result = conn.neptune_set_acl(job_data, @secret)
|
|
147
149
|
}
|
|
148
|
-
|
|
150
|
+
raise AppControllerException.new(result) if result =~ /Error:/
|
|
149
151
|
return result
|
|
150
152
|
end
|
|
151
153
|
|
|
@@ -154,7 +156,23 @@ class AppControllerClient
|
|
|
154
156
|
make_call(NO_TIMEOUT, false) {
|
|
155
157
|
result = conn.neptune_compile_code(job_data, @secret)
|
|
156
158
|
}
|
|
157
|
-
|
|
159
|
+
raise AppControllerException.new(result) if result =~ /Error:/
|
|
160
|
+
return result
|
|
161
|
+
end
|
|
162
|
+
|
|
163
|
+
def get_supported_babel_engines(job_data)
|
|
164
|
+
result = []
|
|
165
|
+
make_call(NO_TIMEOUT, false) {
|
|
166
|
+
result = conn.neptune_get_supported_babel_engines(job_data, @secret)
|
|
167
|
+
}
|
|
168
|
+
return result
|
|
169
|
+
end
|
|
170
|
+
|
|
171
|
+
def does_file_exist?(file, job_data)
|
|
172
|
+
result = false
|
|
173
|
+
make_call(NO_TIMEOUT, false) {
|
|
174
|
+
result = conn.neptune_does_file_exist(file, job_data, @secret)
|
|
175
|
+
}
|
|
158
176
|
return result
|
|
159
177
|
end
|
|
160
178
|
end
|