neptune 0.1.4 → 0.2.0
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- data/README +4 -0
- data/bin/neptune +7 -0
- data/doc/AppControllerClient.html +113 -22
- data/doc/{Kernel.html → AppControllerException.html} +23 -55
- data/doc/BabelHelper.html +707 -0
- data/doc/BadConfigurationException.html +142 -0
- data/doc/CommonFunctions.html +121 -33
- data/doc/FileNotFoundException.html +142 -0
- data/doc/NeptuneHelper.html +1102 -0
- data/doc/Object.html +94 -749
- data/doc/bin/neptune.html +3 -1
- data/doc/created.rid +7 -5
- data/doc/index.html +73 -25
- data/doc/lib/app_controller_client_rb.html +1 -1
- data/doc/lib/babel_rb.html +68 -0
- data/doc/lib/common_functions_rb.html +3 -1
- data/doc/lib/custom_exceptions_rb.html +54 -0
- data/doc/lib/neptune_rb.html +3 -1
- data/lib/app_controller_client.rb +28 -10
- data/lib/babel.rb +260 -0
- data/lib/common_functions.rb +42 -28
- data/lib/custom_exceptions.rb +10 -0
- data/lib/neptune.rb +371 -304
- data/test/unit/test_app_controller_client.rb +9 -9
- data/test/unit/test_babel.rb +154 -0
- data/test/unit/test_common_functions.rb +39 -75
- data/test/unit/test_neptune.rb +168 -76
- data/test/unit/ts_all.rb +5 -0
- metadata +32 -8
data/doc/Object.html
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<h3 class="section-header">Methods</h3>
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<li><a href="./NeptuneHelper.html">NeptuneHelper</a></li>
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use long calls unless necessary.</p></dd>
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<dt><a name="NEEDS_BUCKET_INFO">NEEDS_BUCKET_INFO</a></dt>
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<dd class="description"><p>If the user doesn’t give us enough info to infer what bucket we should
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place their code in, this message is displayed and execution aborts.</p></dd>
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<dt><a name="DOES_NOT_EXIST">DOES_NOT_EXIST</a></dt>
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<dd class="description"><p>The constant string that a Neptune output job returns if the output does
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not yet exist.</p></dd>
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<dt><a name="SLEEP_TIME">SLEEP_TIME</a></dt>
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<dd class="description"><p>The initial amount of time, in seconds, to sleep between output job
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requests. An exponential backoff is used with this value as the starting
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sleep time.</p></dd>
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<dt><a name="MAX_SLEEP_TIME">MAX_SLEEP_TIME</a></dt>
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<dd class="description"><p>The maximum amount of time that we should sleep to, when waiting for output
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job requests.</p></dd>
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<dt><a name="ALLOWED_JOB_TYPES">ALLOWED_JOB_TYPES</a></dt>
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<dd class="description"><p>A list of all the Neptune job types that we support</p></dd>
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<dt><a name="JOB_TYPE_NOT_ALLOWED">JOB_TYPE_NOT_ALLOWED</a></dt>
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<dd class="description"><p>The string to display for disallowed job types.</p></dd>
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<dt><a name="NO_NODES_NEEDED">NO_NODES_NEEDED</a></dt>
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<h3 class="section-header">Public Instance Methods</h3>
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<div class="method-heading">
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class="method-args">(job_data, ssh_args, shadow_ip, shell=Kernel.method(:`))</span>
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<p>This method sends out a request to compile code, waits for it to finish,
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and gets the standard out and error returned from the compilation. This
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method returns a hash containing the standard out, error, and a result that
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indicates whether or not the compilation was successful.</p>
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wait_for_compilation_to_finish(ssh_args, shadow_ip, compiled_location)
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scp_command = "scp -r #{ssh_args} root@#{shadow_ip}:#{compiled_location} #{copy_to} 2>&1"
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code = job_data[<span class="ruby-string">"@code"</span>]
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[remote_dir, compiled_location].each { |remote_files|
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ssh_command = "ssh #{ssh_args} root@#{shadow_ip} 'rm -rf #{remote_files}' 2>&1"
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puts ssh_command
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}
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return get_std_out_and_err(copy_to)
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end</pre>
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class="method-args">(job_data)</span>
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(e.g., copying input data or code over). This method dispatches the right
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method to use based on the type of the job that the user has asked to run.</p>
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return
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end
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preprocess = "preprocess_#{job_type}".to_sym
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send(preprocess, job_data)
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end</pre>
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class="method-args">(job_data, ssh_args, shadow_ip, controller, file=File, shell=Kernel.method(:`))</span>
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result = {:result => :success}
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reason = "the file you specified to copy, #{local_file}, doesn't exist." +
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remote = "/tmp/neptune-input-#{rand(100000)}"
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job_data[<span class="ruby-string">"@local"</span>] = remote
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if response
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end</pre>
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<p>Babel provides a nice wrapper around Neptune jobs. Instead of making users
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|
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|
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|
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|
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|
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|
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|
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|
|
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not the job completed successfully (success = no errors).</p>
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<div class="method-source-code"
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id="get_std_out_and_err-source">
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|
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|
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|
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|
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|
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|
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|
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end
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|
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|
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|
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|
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|
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}
|
|
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|
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|
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|
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|
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@@ -512,7 +312,7 @@ end</pre>
|
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|
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|
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|
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<p>This method is the heart of Neptune - here, we take blocks of code that the
|
|
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|
-
user has written and convert them into HPC job requests. At a high level,
|
|
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user has written and convert them into HPC job requests. At a high level,
|
|
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|
the user can request to run a job, retrieve a job’s output, or modify the
|
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|
access policy (ACL) for the output of a job. By default, job data is
|
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private, but a Neptune job can be used to set it to public later (and
|
|
@@ -523,15 +323,14 @@ vice-versa).</p>
|
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|
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|
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|
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|
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|
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|
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<span class="ruby-comment"># File lib/neptune.rb, line
|
|
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|
|
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327
|
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|
|
528
|
-
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|
|
529
|
-
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|
|
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|
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|
|
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|
+
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|
|
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330
|
|
|
531
|
-
job_data = get_job_data(params)
|
|
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|
-
validate_storage_params(job_data)
|
|
533
|
-
puts "job data = #{job_data.inspect}"
|
|
534
|
-
do_preprocessing(job_data)
|
|
331
|
+
job_data = <span class="ruby-constant">NeptuneHelper</span>.get_job_data(params)
|
|
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|
+
<span class="ruby-constant">NeptuneHelper</span>.validate_storage_params(job_data)
|
|
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|
+
<span class="ruby-constant">Kernel</span>.puts "job data = #{job_data.inspect}"
|
|
535
334
|
keyname = job_data[<span class="ruby-string">"@keyname"</span>]
|
|
536
335
|
|
|
537
336
|
shadow_ip = <span class="ruby-constant">CommonFunctions</span>.get_from_yaml(keyname, :shadow)
|
|
@@ -539,463 +338,9 @@ def neptune(params)
|
|
|
539
338
|
ssh_key = <span class="ruby-constant">File</span>.expand_path("~/.appscale/#{keyname}.key")
|
|
540
339
|
ssh_args = "-i ~/.appscale/#{keyname}.key -o StrictHostkeyChecking=no "
|
|
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|
|
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|
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|
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|
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</div>
|
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|
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|
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|
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|
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|
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|
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|
|
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|
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|
|
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|
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|
|
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|
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|
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|
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|
|
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|
-
class="method-args">(job_data, shell=Kernel.method(:`))</span>
|
|
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|
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<span class="method-click-advice">click to toggle source</span>
|
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|
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</div>
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|
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|
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<div class="method-description">
|
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|
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|
|
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|
-
<p>This preprocessing method copies over the user’s code to the Shadow node
|
|
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|
-
so that it can be compiled there. A future version of this method may also
|
|
569
|
-
copy over libraries as well.</p>
|
|
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|
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|
|
571
|
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|
|
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|
-
|
|
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|
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<div class="method-source-code"
|
|
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|
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id="preprocess_compile-source">
|
|
575
|
-
<pre>
|
|
576
|
-
<span class="ruby-comment"># File lib/neptune.rb, line 65</span>
|
|
577
|
-
def preprocess_compile(job_data, shell=<span class="ruby-constant">Kernel</span>.method(:`))
|
|
578
|
-
code = <span class="ruby-constant">File</span>.expand_path(job_data[<span class="ruby-string">"@code"</span>])
|
|
579
|
-
if !<span class="ruby-constant">File</span>.exists?(code)
|
|
580
|
-
abort("The source file #{code} does not exist.")
|
|
581
|
-
end
|
|
582
|
-
|
|
583
|
-
suffix = code.split(<span class="ruby-string">'/'</span>)[-1]
|
|
584
|
-
dest = "/tmp/#{suffix}"
|
|
585
|
-
keyname = job_data[<span class="ruby-string">"@keyname"</span>]
|
|
586
|
-
shadow_ip = <span class="ruby-constant">CommonFunctions</span>.get_from_yaml(keyname, :shadow)
|
|
587
|
-
|
|
588
|
-
ssh_args = "-i ~/.appscale/#{keyname}.key -o StrictHostkeyChecking=no root@#{shadow_ip}"
|
|
589
|
-
remove_dir = "ssh #{ssh_args} 'rm -rf #{dest}' 2>&1"
|
|
590
|
-
puts remove_dir
|
|
591
|
-
shell.call(remove_dir)
|
|
592
|
-
|
|
593
|
-
<span class="ruby-constant">CommonFunctions</span>.scp_to_shadow(code, dest, keyname, is_dir=true)
|
|
594
|
-
|
|
595
|
-
job_data[<span class="ruby-string">"@code"</span>] = dest
|
|
596
|
-
end</pre>
|
|
597
|
-
</div>
|
|
598
|
-
|
|
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|
-
</div>
|
|
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|
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|
|
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|
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|
|
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|
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|
|
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|
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|
|
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|
-
</div>
|
|
605
|
-
|
|
606
|
-
|
|
607
|
-
<div id="preprocess_erlang-method" class="method-detail ">
|
|
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|
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<a name="method-i-preprocess_erlang"></a>
|
|
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|
-
|
|
610
|
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|
|
611
|
-
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|
|
612
|
-
<span class="method-name">preprocess_erlang</span><span
|
|
613
|
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class="method-args">(job_data, file=File, common_functions=CommonFunctions)</span>
|
|
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|
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|
|
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</div>
|
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|
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<div class="method-source-code"
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|
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id="preprocess_erlang-source">
|
|
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|
-
<pre>
|
|
627
|
-
<span class="ruby-comment"># File lib/neptune.rb, line 86</span>
|
|
628
|
-
def preprocess_erlang(job_data, file=<span class="ruby-constant">File</span>, common_functions=<span class="ruby-constant">CommonFunctions</span>)
|
|
629
|
-
if !job_data[<span class="ruby-string">"@code"</span>]
|
|
630
|
-
abort(<span class="ruby-string">"When running Erlang jobs, :code must be specified."</span>)
|
|
631
|
-
end
|
|
632
|
-
|
|
633
|
-
source_code = file.expand_path(job_data[<span class="ruby-string">"@code"</span>])
|
|
634
|
-
if !file.exists?(source_code)
|
|
635
|
-
abort("The specified code, #{job_data['@code']}," +
|
|
636
|
-
<span class="ruby-string">" didn't exist. Please specify one that exists and try again"</span>)
|
|
637
|
-
end
|
|
638
|
-
dest_code = <span class="ruby-string">"/tmp/"</span>
|
|
639
|
-
|
|
640
|
-
keyname = job_data[<span class="ruby-string">"@keyname"</span>]
|
|
641
|
-
common_functions.scp_to_shadow(source_code, dest_code, keyname)
|
|
642
|
-
end</pre>
|
|
643
|
-
</div>
|
|
644
|
-
|
|
645
|
-
</div>
|
|
646
|
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|
|
647
|
-
|
|
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|
-
|
|
649
|
-
|
|
650
|
-
</div>
|
|
651
|
-
|
|
652
|
-
|
|
653
|
-
<div id="preprocess_mpi-method" class="method-detail ">
|
|
654
|
-
<a name="method-i-preprocess_mpi"></a>
|
|
655
|
-
|
|
656
|
-
|
|
657
|
-
<div class="method-heading">
|
|
658
|
-
<span class="method-name">preprocess_mpi</span><span
|
|
659
|
-
class="method-args">(job_data)</span>
|
|
660
|
-
<span class="method-click-advice">click to toggle source</span>
|
|
661
|
-
</div>
|
|
662
|
-
|
|
663
|
-
|
|
664
|
-
<div class="method-description">
|
|
665
|
-
|
|
666
|
-
<p>This preprocessing method verifies that the user specified the number of
|
|
667
|
-
nodes to use. If they also specified the number of processes to use, we
|
|
668
|
-
also verify that this value is at least as many as the number of nodes
|
|
669
|
-
(that is, nodes can’t be underprovisioned in MPI).</p>
|
|
670
|
-
|
|
671
|
-
|
|
672
|
-
|
|
673
|
-
<div class="method-source-code"
|
|
674
|
-
id="preprocess_mpi-source">
|
|
675
|
-
<pre>
|
|
676
|
-
<span class="ruby-comment"># File lib/neptune.rb, line 106</span>
|
|
677
|
-
def preprocess_mpi(job_data)
|
|
678
|
-
if !job_data[<span class="ruby-string">"@nodes_to_use"</span>]
|
|
679
|
-
abort(<span class="ruby-string">"When running MPI jobs, :nodes_to_use must be specified."</span>)
|
|
680
|
-
end
|
|
681
|
-
|
|
682
|
-
if !job_data[<span class="ruby-string">"@procs_to_use"</span>]
|
|
683
|
-
abort(<span class="ruby-string">"When running MPI jobs, :procs_to_use must be specified."</span>)
|
|
684
|
-
end
|
|
685
|
-
|
|
686
|
-
if job_data[<span class="ruby-string">"@procs_to_use"</span>]
|
|
687
|
-
p = job_data[<span class="ruby-string">"@procs_to_use"</span>]
|
|
688
|
-
n = job_data[<span class="ruby-string">"@nodes_to_use"</span>]
|
|
689
|
-
if p < n
|
|
690
|
-
abort(<span class="ruby-string">"When specifying both :procs_to_use and :nodes_to_use"</span> +
|
|
691
|
-
<span class="ruby-string">", :procs_to_use must be at least as large as :nodes_to_use. Please "</span> +
|
|
692
|
-
"change this and try again. You specified :procs_to_use = #{p} and" +
|
|
693
|
-
":nodes_to_use = #{n}.")
|
|
694
|
-
end
|
|
695
|
-
end
|
|
696
|
-
|
|
697
|
-
if job_data[<span class="ruby-string">"@argv"</span>]
|
|
698
|
-
argv = job_data[<span class="ruby-string">"@argv"</span>]
|
|
699
|
-
if argv.class != <span class="ruby-constant">String</span> and argv.class != <span class="ruby-constant">Array</span>
|
|
700
|
-
abort(<span class="ruby-string">"The value specified for :argv must be either a String or Array"</span>)
|
|
701
|
-
end
|
|
702
|
-
|
|
703
|
-
if argv.class == <span class="ruby-constant">Array</span>
|
|
704
|
-
job_data[<span class="ruby-string">"@argv"</span>] = argv.join(<span class="ruby-string">' '</span>)
|
|
705
|
-
end
|
|
706
|
-
end
|
|
707
|
-
|
|
708
|
-
return job_data
|
|
709
|
-
end</pre>
|
|
710
|
-
</div>
|
|
711
|
-
|
|
712
|
-
</div>
|
|
713
|
-
|
|
714
|
-
|
|
715
|
-
|
|
716
|
-
|
|
717
|
-
</div>
|
|
718
|
-
|
|
719
|
-
|
|
720
|
-
<div id="preprocess_ssa-method" class="method-detail ">
|
|
721
|
-
<a name="method-i-preprocess_ssa"></a>
|
|
722
|
-
|
|
723
|
-
|
|
724
|
-
<div class="method-heading">
|
|
725
|
-
<span class="method-name">preprocess_ssa</span><span
|
|
726
|
-
class="method-args">(job_data)</span>
|
|
727
|
-
<span class="method-click-advice">click to toggle source</span>
|
|
728
|
-
</div>
|
|
729
|
-
|
|
730
|
-
|
|
731
|
-
<div class="method-description">
|
|
732
|
-
|
|
733
|
-
<p>This preprocessing method verifies that the user specified the number of
|
|
734
|
-
trajectories to run, via either :trajectories or :simulations. Both should
|
|
735
|
-
not be specified - only one or the other, and regardless of which they
|
|
736
|
-
specify, convert it to be :trajectories.</p>
|
|
737
|
-
|
|
738
|
-
|
|
739
|
-
|
|
740
|
-
<div class="method-source-code"
|
|
741
|
-
id="preprocess_ssa-source">
|
|
742
|
-
<pre>
|
|
743
|
-
<span class="ruby-comment"># File lib/neptune.rb, line 144</span>
|
|
744
|
-
def preprocess_ssa(job_data)
|
|
745
|
-
if job_data[<span class="ruby-string">"@simulations"</span>] and job_data[<span class="ruby-string">"@trajectories"</span>]
|
|
746
|
-
abort(<span class="ruby-string">"Both :simulations and :trajectories cannot be specified - use one"</span> +
|
|
747
|
-
<span class="ruby-string">" or the other."</span>)
|
|
748
|
-
end
|
|
749
|
-
|
|
750
|
-
if job_data[<span class="ruby-string">"@simulations"</span>]
|
|
751
|
-
job_data[<span class="ruby-string">"@trajectories"</span>] = job_data[<span class="ruby-string">"@simulations"</span>]
|
|
752
|
-
job_data.delete(<span class="ruby-string">"@simulations"</span>)
|
|
753
|
-
end
|
|
754
|
-
|
|
755
|
-
if !job_data[<span class="ruby-string">"@trajectories"</span>]
|
|
756
|
-
abort(<span class="ruby-string">":trajectories needs to be specified when running ssa jobs"</span>)
|
|
757
|
-
end
|
|
758
|
-
|
|
759
|
-
return job_data
|
|
760
|
-
end</pre>
|
|
761
|
-
</div>
|
|
762
|
-
|
|
763
|
-
</div>
|
|
764
|
-
|
|
765
|
-
|
|
766
|
-
|
|
767
|
-
|
|
768
|
-
</div>
|
|
769
|
-
|
|
770
|
-
|
|
771
|
-
<div id="run_job-method" class="method-detail ">
|
|
772
|
-
<a name="method-i-run_job"></a>
|
|
773
|
-
|
|
774
|
-
|
|
775
|
-
<div class="method-heading">
|
|
776
|
-
<span class="method-name">run_job</span><span
|
|
777
|
-
class="method-args">(job_data, ssh_args, shadow_ip, secret, controller=AppControllerClient, file=File)</span>
|
|
778
|
-
<span class="method-click-advice">click to toggle source</span>
|
|
779
|
-
</div>
|
|
780
|
-
|
|
781
|
-
|
|
782
|
-
<div class="method-description">
|
|
783
|
-
|
|
784
|
-
<p>This method actually runs the Neptune job, given information about the job
|
|
785
|
-
as well as information about the node to send the request to.</p>
|
|
786
|
-
|
|
787
|
-
|
|
788
|
-
|
|
789
|
-
<div class="method-source-code"
|
|
790
|
-
id="run_job-source">
|
|
791
|
-
<pre>
|
|
792
|
-
<span class="ruby-comment"># File lib/neptune.rb, line 376</span>
|
|
793
|
-
def run_job(job_data, ssh_args, shadow_ip, secret,
|
|
794
|
-
controller=<span class="ruby-constant">AppControllerClient</span>, file=<span class="ruby-constant">File</span>)
|
|
795
|
-
controller = controller.new(shadow_ip, secret)
|
|
796
|
-
|
|
797
|
-
<span class="ruby-comment"># TODO - right now the job is assumed to succeed in many cases</span>
|
|
798
|
-
<span class="ruby-comment"># need to investigate the various failure scenarios</span>
|
|
799
|
-
result = { :result => :success }
|
|
800
|
-
|
|
801
|
-
case job_data[<span class="ruby-string">"@type"</span>]
|
|
802
|
-
when <span class="ruby-string">"input"</span>
|
|
803
|
-
result = get_input(job_data, ssh_args, shadow_ip, controller, file)
|
|
804
|
-
when <span class="ruby-string">"output"</span>
|
|
805
|
-
result[:output] = controller.get_output(job_data)
|
|
806
|
-
when <span class="ruby-string">"get-acl"</span>
|
|
807
|
-
job_data[<span class="ruby-string">"@type"</span>] = <span class="ruby-string">"acl"</span>
|
|
808
|
-
result[:acl] = controller.get_acl(job_data)
|
|
809
|
-
when <span class="ruby-string">"set-acl"</span>
|
|
810
|
-
job_data[<span class="ruby-string">"@type"</span>] = <span class="ruby-string">"acl"</span>
|
|
811
|
-
result[:acl] = controller.set_acl(job_data)
|
|
812
|
-
when <span class="ruby-string">"compile"</span>
|
|
813
|
-
result = compile_code(job_data, ssh_args, shadow_ip)
|
|
814
|
-
when <span class="ruby-string">"cicero"</span>
|
|
815
|
-
upload_app_for_cicero(job_data)
|
|
816
|
-
msg = controller.start_neptune_job(job_data)
|
|
817
|
-
result[:msg] = msg
|
|
818
|
-
result[:result] = :failure if result[:msg] !~ <span class="ruby-regexp">/job is now running\Z/</span>
|
|
819
|
-
else
|
|
820
|
-
msg = controller.start_neptune_job(job_data)
|
|
821
|
-
result[:msg] = msg
|
|
822
|
-
result[:result] = :failure if result[:msg] !~ <span class="ruby-regexp">/job is now running\Z/</span>
|
|
823
|
-
end
|
|
824
|
-
|
|
825
|
-
return result
|
|
826
|
-
end</pre>
|
|
827
|
-
</div>
|
|
828
|
-
|
|
829
|
-
</div>
|
|
830
|
-
|
|
831
|
-
|
|
832
|
-
|
|
833
|
-
|
|
834
|
-
</div>
|
|
835
|
-
|
|
836
|
-
|
|
837
|
-
<div id="upload_app_for_cicero-method" class="method-detail ">
|
|
838
|
-
<a name="method-i-upload_app_for_cicero"></a>
|
|
839
|
-
|
|
840
|
-
|
|
841
|
-
<div class="method-heading">
|
|
842
|
-
<span class="method-name">upload_app_for_cicero</span><span
|
|
843
|
-
class="method-args">(job_data)</span>
|
|
844
|
-
<span class="method-click-advice">click to toggle source</span>
|
|
845
|
-
</div>
|
|
846
|
-
|
|
847
|
-
|
|
848
|
-
<div class="method-description">
|
|
849
|
-
|
|
850
|
-
|
|
851
|
-
|
|
852
|
-
|
|
853
|
-
|
|
854
|
-
<div class="method-source-code"
|
|
855
|
-
id="upload_app_for_cicero-source">
|
|
856
|
-
<pre>
|
|
857
|
-
<span class="ruby-comment"># File lib/neptune.rb, line 348</span>
|
|
858
|
-
def upload_app_for_cicero(job_data)
|
|
859
|
-
if !job_data[<span class="ruby-string">"@app"</span>]
|
|
860
|
-
puts <span class="ruby-string">"No app specified, not uploading..."</span>
|
|
861
|
-
return
|
|
862
|
-
end
|
|
863
|
-
|
|
864
|
-
app_location = <span class="ruby-constant">File</span>.expand_path(job_data[<span class="ruby-string">"@app"</span>])
|
|
865
|
-
if !<span class="ruby-constant">File</span>.exists?(app_location)
|
|
866
|
-
abort("The app you specified, #{app_location}, does not exist." +
|
|
867
|
-
<span class="ruby-string">"Please specify one that does and try again."</span>)
|
|
868
|
-
end
|
|
869
|
-
|
|
870
|
-
keyname = job_data[<span class="ruby-string">"@keyname"</span>] || <span class="ruby-string">"appscale"</span>
|
|
871
|
-
if job_data[<span class="ruby-string">"@appscale_tools"</span>]
|
|
872
|
-
upload_app = <span class="ruby-constant">File</span>.expand_path(job_data[<span class="ruby-string">"@appscale_tools"</span>]) +
|
|
873
|
-
<span class="ruby-constant">File</span>::<span class="ruby-constant">SEPARATOR</span> + <span class="ruby-string">"bin"</span> + <span class="ruby-constant">File</span>::<span class="ruby-constant">SEPARATOR</span> + <span class="ruby-string">"appscale-upload-app"</span>
|
|
874
|
-
else
|
|
875
|
-
upload_app = <span class="ruby-string">"appscale-upload-app"</span>
|
|
876
|
-
end
|
|
877
|
-
|
|
878
|
-
puts "Uploading AppEngine app at #{app_location}"
|
|
879
|
-
upload_command = "#{upload_app} --file #{app_location} --test --keyname #{keyname}"
|
|
880
|
-
puts upload_command
|
|
881
|
-
puts `#{upload_command}`
|
|
882
|
-
end</pre>
|
|
883
|
-
</div>
|
|
884
|
-
|
|
885
|
-
</div>
|
|
886
|
-
|
|
887
|
-
|
|
888
|
-
|
|
889
|
-
|
|
890
|
-
</div>
|
|
891
|
-
|
|
892
|
-
|
|
893
|
-
<div id="validate_storage_params-method" class="method-detail ">
|
|
894
|
-
<a name="method-i-validate_storage_params"></a>
|
|
895
|
-
|
|
896
|
-
|
|
897
|
-
<div class="method-heading">
|
|
898
|
-
<span class="method-name">validate_storage_params</span><span
|
|
899
|
-
class="method-args">(job_data)</span>
|
|
900
|
-
<span class="method-click-advice">click to toggle source</span>
|
|
901
|
-
</div>
|
|
902
|
-
|
|
903
|
-
|
|
904
|
-
<div class="method-description">
|
|
905
|
-
|
|
906
|
-
|
|
907
|
-
|
|
908
|
-
|
|
909
|
-
|
|
910
|
-
<div class="method-source-code"
|
|
911
|
-
id="validate_storage_params-source">
|
|
912
|
-
<pre>
|
|
913
|
-
<span class="ruby-comment"># File lib/neptune.rb, line 206</span>
|
|
914
|
-
def validate_storage_params(job_data)
|
|
915
|
-
if !job_data[<span class="ruby-string">"@storage"</span>]
|
|
916
|
-
job_data[<span class="ruby-string">"@storage"</span>] = <span class="ruby-string">"appdb"</span>
|
|
917
|
-
end
|
|
918
|
-
|
|
919
|
-
storage = job_data[<span class="ruby-string">"@storage"</span>]
|
|
920
|
-
if !<span class="ruby-constant">ALLOWED_STORAGE_TYPES</span>.include?(storage)
|
|
921
|
-
abort("Supported storage types are #{ALLOWED_STORAGE_TYPES.join(', ')}" +
|
|
922
|
-
" - we do not support #{storage}.")
|
|
923
|
-
end
|
|
924
|
-
|
|
925
|
-
<span class="ruby-comment"># Our implementation for storing / retrieving via Google Storage</span>
|
|
926
|
-
<span class="ruby-comment"># and Walrus uses</span>
|
|
927
|
-
<span class="ruby-comment"># the same library as we do for S3 - so just tell it that it's S3</span>
|
|
928
|
-
if storage == <span class="ruby-string">"gstorage"</span> or storage == <span class="ruby-string">"walrus"</span>
|
|
929
|
-
storage = <span class="ruby-string">"s3"</span>
|
|
930
|
-
job_data[<span class="ruby-string">"@storage"</span>] = <span class="ruby-string">"s3"</span>
|
|
931
|
-
end
|
|
932
|
-
|
|
933
|
-
if storage == <span class="ruby-string">"s3"</span>
|
|
934
|
-
[<span class="ruby-string">"EC2_ACCESS_KEY"</span>, <span class="ruby-string">"EC2_SECRET_KEY"</span>, <span class="ruby-string">"S3_URL"</span>].each { |item|
|
|
935
|
-
if job_data["@#{item}"]
|
|
936
|
-
puts "Using specified #{item}"
|
|
937
|
-
else
|
|
938
|
-
if <span class="ruby-constant">ENV</span>[item]
|
|
939
|
-
puts "Using #{item} from environment"
|
|
940
|
-
job_data["@#{item}"] = <span class="ruby-constant">ENV</span>[item]
|
|
941
|
-
else
|
|
942
|
-
abort("When storing data to S3, #{item} must be specified or be in " +
|
|
943
|
-
<span class="ruby-string">"your environment. Please do so and try again."</span>)
|
|
944
|
-
end
|
|
945
|
-
end
|
|
946
|
-
}
|
|
947
|
-
end
|
|
948
|
-
|
|
949
|
-
return job_data
|
|
950
|
-
end</pre>
|
|
951
|
-
</div>
|
|
952
|
-
|
|
953
|
-
</div>
|
|
954
|
-
|
|
955
|
-
|
|
956
|
-
|
|
957
|
-
|
|
958
|
-
</div>
|
|
959
|
-
|
|
960
|
-
|
|
961
|
-
<div id="wait_for_compilation_to_finish-method" class="method-detail ">
|
|
962
|
-
<a name="method-i-wait_for_compilation_to_finish"></a>
|
|
963
|
-
|
|
964
|
-
|
|
965
|
-
<div class="method-heading">
|
|
966
|
-
<span class="method-name">wait_for_compilation_to_finish</span><span
|
|
967
|
-
class="method-args">(ssh_args, shadow_ip, compiled_location, shell=Kernel.method(:`))</span>
|
|
968
|
-
<span class="method-click-advice">click to toggle source</span>
|
|
969
|
-
</div>
|
|
970
|
-
|
|
971
|
-
|
|
972
|
-
<div class="method-description">
|
|
973
|
-
|
|
974
|
-
<p>This method waits for AppScale to finish compiling the user’s code,
|
|
975
|
-
indicated by AppScale copying the finished code to a pre-determined
|
|
976
|
-
location.</p>
|
|
977
|
-
|
|
978
|
-
|
|
979
|
-
|
|
980
|
-
<div class="method-source-code"
|
|
981
|
-
id="wait_for_compilation_to_finish-source">
|
|
982
|
-
<pre>
|
|
983
|
-
<span class="ruby-comment"># File lib/neptune.rb, line 280</span>
|
|
984
|
-
def wait_for_compilation_to_finish(ssh_args, shadow_ip, compiled_location,
|
|
985
|
-
shell=<span class="ruby-constant">Kernel</span>.method(:`))
|
|
986
|
-
loop {
|
|
987
|
-
ssh_command = "ssh #{ssh_args} root@#{shadow_ip} 'ls #{compiled_location}' 2>&1"
|
|
988
|
-
puts ssh_command
|
|
989
|
-
ssh_result = shell.call(ssh_command)
|
|
990
|
-
puts "result was [#{ssh_result}]"
|
|
991
|
-
if ssh_result =~ <span class="ruby-regexp">/No such file or directory/</span>
|
|
992
|
-
puts <span class="ruby-string">"Still waiting for code to be compiled..."</span>
|
|
993
|
-
else
|
|
994
|
-
puts "compilation complete! Copying compiled code to #{copy_to}"
|
|
995
|
-
return
|
|
996
|
-
end
|
|
997
|
-
sleep(5)
|
|
998
|
-
}
|
|
341
|
+
controller = <span class="ruby-constant">AppControllerClient</span>.new(shadow_ip, secret)
|
|
342
|
+
<span class="ruby-constant">NeptuneHelper</span>.do_preprocessing(job_data, controller)
|
|
343
|
+
return <span class="ruby-constant">NeptuneHelper</span>.run_job(job_data, ssh_args, shadow_ip, secret)
|
|
999
344
|
end</pre>
|
|
1000
345
|
</div>
|
|
1001
346
|
|