myexperiment-rest 0.2.8 → 0.3.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/CHANGES +13 -0
- data/README +3 -3
- data/Rakefile +4 -9
- data/bin/get_workflow_data.rb +27 -9
- data/doc/rdoc/CHANGES.html +30 -4
- data/doc/rdoc/LICENSE.html +8 -4
- data/doc/rdoc/MyExperimentREST.html +101 -10
- data/doc/rdoc/MyExperimentREST/{TavernaIOData.html → MyExperimentIOData.html} +76 -14
- data/doc/rdoc/MyExperimentREST/{TavernaUser.html → MyExperimentUser.html} +122 -22
- data/doc/rdoc/MyExperimentREST/{TavernaWorkflow.html → MyExperimentWorkflow.html} +87 -62
- data/doc/rdoc/MyExperimentREST/Urls.html +168 -0
- data/doc/rdoc/MyExperimentREST/User.html +260 -0
- data/doc/rdoc/MyExperimentREST/{Workflows.html → Workflow.html} +72 -61
- data/doc/rdoc/README.html +12 -7
- data/doc/rdoc/created.rid +7 -5
- data/doc/rdoc/index.html +30 -11
- data/doc/rdoc/lib/myexperiment-rest/constants_rb.html +52 -0
- data/doc/rdoc/lib/myexperiment-rest/{myexperiment_rest_rb.html → user_rb.html} +2 -8
- data/doc/rdoc/lib/myexperiment-rest/workflow_rb.html +54 -0
- data/doc/rdoc/lib/myexperiment-rest_rb.html +10 -2
- data/lib/myexperiment-rest.rb +42 -1
- data/lib/myexperiment-rest/constants.rb +11 -0
- data/lib/myexperiment-rest/user.rb +83 -0
- data/lib/myexperiment-rest/workflow.rb +145 -0
- metadata +21 -15
- data/lib/myexperiment-rest/myexperiment_rest.rb +0 -190
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title="show/hide quicksearch" /></span></h3>
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<ul class="link-list">
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<li><a href="../MyExperimentREST.html">MyExperimentREST</a></li>
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<li><a href="../MyExperimentREST/MyExperimentIOData.html">MyExperimentREST::MyExperimentIOData</a></li>
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<li><a href="../MyExperimentREST/MyExperimentUser.html">MyExperimentREST::MyExperimentUser</a></li>
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<li><a href="../MyExperimentREST/MyExperimentWorkflow.html">MyExperimentREST::MyExperimentWorkflow</a></li>
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<li><a href="../MyExperimentREST/Urls.html">MyExperimentREST::Urls</a></li>
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<li><a href="../MyExperimentREST/User.html">MyExperimentREST::User</a></li>
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<li><a href="../MyExperimentREST/Workflow.html">MyExperimentREST::Workflow</a></li>
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<div id="documentation">
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<h1 class="class">MyExperimentREST::User</h1>
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<div id="description" class="description">
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<p>Connects to myExperiment REST API and creates a <em><a
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href="MyExperimentUser.html">MyExperimentUser</a></em> object.</p>
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<h3 class="section-header">Public Class Methods</h3>
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<div class="method-heading">
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<span class="method-name">from_id</span><span
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class="method-args">(user_id)</span>
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<div class="method-description">
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<p>Returns a <em><a href="MyExperimentUser.html">MyExperimentUser</a></em>
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object given a myExperiment id for that user.</p>
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<div class="method-source-code" id="from_id-source">
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<pre>
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<span class="ruby-comment"># File lib/myexperiment-rest/user.rb, line 31</span>
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<span class="ruby-keyword">def</span> <span class="ruby-keyword">self</span>.<span class="ruby-identifier">from_id</span>(<span class="ruby-identifier">user_id</span>)
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<span class="ruby-comment"># Get user resource information</span>
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<span class="ruby-identifier">xml</span> = <span class="ruby-constant">MyExperimentREST</span>.<span class="ruby-identifier">get_myexperiment_data</span>(<span class="ruby-constant">Urls</span><span class="ruby-operator">::</span><span class="ruby-constant">USER_URL</span>, <span class="ruby-value">:id</span> =<span class="ruby-operator">></span> <span class="ruby-identifier">user_id</span>)
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<span class="ruby-constant">MyExperimentUser</span>.<span class="ruby-identifier">parse</span>(<span class="ruby-identifier">xml</span>)
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<span class="ruby-keyword">end</span></pre>
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<a name="method-c-from_uri"></a>
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<p>Returns a <em><a href="MyExperimentUser.html">MyExperimentUser</a></em>
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object given a URI of the user in the repository as a String.</p>
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<pre>
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<span class="ruby-comment"># File lib/myexperiment-rest/user.rb, line 11</span>
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<span class="ruby-keyword">def</span> <span class="ruby-keyword">self</span>.<span class="ruby-identifier">from_uri</span>(<span class="ruby-identifier">uri</span>)
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<span class="ruby-identifier">user_id</span> = <span class="ruby-string">''</span>
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<span class="ruby-comment"># Get user id - will match both user/74 and users.xml?id=74</span>
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<span class="ruby-identifier">uri_id</span> = <span class="ruby-identifier">uri</span>.<span class="ruby-identifier">match</span>(<span class="ruby-regexp">/user.*[\/?](id=)?(\d+)/</span>)
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<span class="ruby-keyword">if</span> <span class="ruby-identifier">uri_id</span> <span class="ruby-operator">!=</span> <span class="ruby-keyword">nil</span>
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<span class="ruby-identifier">user_id</span> = <span class="ruby-identifier">uri_id</span>[<span class="ruby-value">2</span>]
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<span class="ruby-keyword">end</span>
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<span class="ruby-comment"># Get user resource information</span>
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<span class="ruby-identifier">xml</span> = <span class="ruby-constant">MyExperimentREST</span>.<span class="ruby-identifier">get_myexperiment_data</span>(<span class="ruby-constant">Urls</span><span class="ruby-operator">::</span><span class="ruby-constant">USER_URL</span>, <span class="ruby-value">:id</span> =<span class="ruby-operator">></span> <span class="ruby-identifier">user_id</span>)
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<span class="ruby-constant">MyExperimentUser</span>.<span class="ruby-identifier">parse</span>(<span class="ruby-identifier">xml</span>)
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<span class="ruby-keyword">end</span></pre>
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<p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
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<p><small>Generated with the <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish
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Rdoc Generator</a> 2</small>.</p>
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<p>Returns a <em><a
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a myExperiment id and version for that workflow.</p>
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<pre>
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<span class="ruby-comment"># File lib/myexperiment-rest/workflow.rb, line 38</span>
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<span class="ruby-keyword">def</span> <span class="ruby-keyword">self</span>.<span class="ruby-identifier">from_id_and_version</span>(<span class="ruby-identifier">id</span>, <span class="ruby-identifier">version</span>=<span class="ruby-string">''</span>)
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<span class="ruby-comment"># Get workflow resource information</span>
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<span class="ruby-identifier">xml</span> = <span class="ruby-constant">MyExperimentREST</span>.<span class="ruby-identifier">get_myexperiment_data</span>(<span class="ruby-constant">Urls</span><span class="ruby-operator">::</span><span class="ruby-constant">WORKFLOW_URL</span>, <span class="ruby-value">:id</span> =<span class="ruby-operator">></span> <span class="ruby-identifier">id</span>, <span class="ruby-value">:version</span> =<span class="ruby-operator">></span> <span class="ruby-identifier">version</span>)
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<span class="ruby-constant">MyExperimentWorkflow</span>.<span class="ruby-identifier">parse</span>(<span class="ruby-identifier">xml</span>)
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<span class="ruby-keyword">end</span></pre>
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a URI of the workflow in the repository as a String.</p>
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<span class="ruby-identifier">workflow_id</span> = <span class="ruby-string">''</span>
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<span class="ruby-identifier">uri_id</span> = <span class="ruby-identifier">uri</span>.<span class="ruby-identifier">match</span>(<span class="ruby-regexp">/workflow.*[\/?](id=)?(\d+)/</span>)
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<span class="ruby-identifier">xml</span> = <span class="ruby-constant">MyExperimentREST</span>.<span class="ruby-identifier">get_myexperiment_data</span>(<span class="ruby-constant">Urls</span><span class="ruby-operator">::</span><span class="ruby-constant">WORKFLOW_URL</span>, <span class="ruby-value">:id</span> =<span class="ruby-operator">></span> <span class="ruby-identifier">workflow_id</span>, <span class="ruby-value">:version</span> =<span class="ruby-operator">></span> <span class="ruby-identifier">workflow_version</span>)
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