myexperiment-rest 0.2.8 → 0.3.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (26) hide show
  1. data/CHANGES +13 -0
  2. data/README +3 -3
  3. data/Rakefile +4 -9
  4. data/bin/get_workflow_data.rb +27 -9
  5. data/doc/rdoc/CHANGES.html +30 -4
  6. data/doc/rdoc/LICENSE.html +8 -4
  7. data/doc/rdoc/MyExperimentREST.html +101 -10
  8. data/doc/rdoc/MyExperimentREST/{TavernaIOData.html → MyExperimentIOData.html} +76 -14
  9. data/doc/rdoc/MyExperimentREST/{TavernaUser.html → MyExperimentUser.html} +122 -22
  10. data/doc/rdoc/MyExperimentREST/{TavernaWorkflow.html → MyExperimentWorkflow.html} +87 -62
  11. data/doc/rdoc/MyExperimentREST/Urls.html +168 -0
  12. data/doc/rdoc/MyExperimentREST/User.html +260 -0
  13. data/doc/rdoc/MyExperimentREST/{Workflows.html → Workflow.html} +72 -61
  14. data/doc/rdoc/README.html +12 -7
  15. data/doc/rdoc/created.rid +7 -5
  16. data/doc/rdoc/index.html +30 -11
  17. data/doc/rdoc/lib/myexperiment-rest/constants_rb.html +52 -0
  18. data/doc/rdoc/lib/myexperiment-rest/{myexperiment_rest_rb.html → user_rb.html} +2 -8
  19. data/doc/rdoc/lib/myexperiment-rest/workflow_rb.html +54 -0
  20. data/doc/rdoc/lib/myexperiment-rest_rb.html +10 -2
  21. data/lib/myexperiment-rest.rb +42 -1
  22. data/lib/myexperiment-rest/constants.rb +11 -0
  23. data/lib/myexperiment-rest/user.rb +83 -0
  24. data/lib/myexperiment-rest/workflow.rb +145 -0
  25. metadata +21 -15
  26. data/lib/myexperiment-rest/myexperiment_rest.rb +0 -190
data/doc/rdoc/MyExperimentREST/User.html ADDED
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+ <?xml version="1.0" encoding="UTF-8"?>
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+ <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
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+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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+ <head>
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+ <meta content="text/html; charset=UTF-8" http-equiv="Content-Type" />
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+
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+ <title>Class: MyExperimentREST::User</title>
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+
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+ <link rel="stylesheet" href="../rdoc.css" type="text/css" media="screen" />
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+
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+ <script src="../js/jquery.js" type="text/javascript" charset="utf-8"></script>
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+ <script src="../js/thickbox-compressed.js" type="text/javascript" charset="utf-8"></script>
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+ <script src="../js/quicksearch.js" type="text/javascript" charset="utf-8"></script>
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+ <script src="../js/darkfish.js" type="text/javascript" charset="utf-8"></script>
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+
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+ </head>
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+ <body id="top" class="class">
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+
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+ <div id="metadata">
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+ <div id="home-metadata">
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+ <div id="home-section" class="section">
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+ <h3 class="section-header">
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+ <a href="../index.html">Home</a>
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+ <a href="../index.html#classes">Classes</a>
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+ <a href="../index.html#methods">Methods</a>
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+ </h3>
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+ </div>
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+ </div>
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+
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+ <div id="file-metadata">
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+ <div id="file-list-section" class="section">
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+ <h3 class="section-header">In Files</h3>
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+ <div class="section-body">
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+ <ul>
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+
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+ <li><a href="../lib/myexperiment-rest/user_rb.html?TB_iframe=true&amp;height=550&amp;width=785"
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+ class="thickbox" title="lib/myexperiment-rest/user.rb">lib/myexperiment-rest/user.rb</a></li>
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+
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+ </ul>
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+ </div>
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+ </div>
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+
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+
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+ </div>
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+
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+ <div id="class-metadata">
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+
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+ <!-- Parent Class -->
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+ <div id="parent-class-section" class="section">
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+ <h3 class="section-header">Parent</h3>
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+
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+ <p class="link">Object</p>
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+
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+ </div>
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+
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+
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+ <!-- Method Quickref -->
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+ <div id="method-list-section" class="section">
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+ <h3 class="section-header">Methods</h3>
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+ <ul class="link-list">
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+
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+ <li><a href="#method-c-from_id">::from_id</a></li>
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+ <li><a href="#method-c-from_uri">::from_uri</a></li>
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+
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+ </ul>
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+ </div>
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+ </div>
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+
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+ <div id="project-metadata">
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+ <div id="fileindex-section" class="section project-section">
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+ <h3 class="section-header">Files</h3>
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+ <ul>
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+
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+ <li class="file"><a href="../CHANGES.html">CHANGES</a></li>
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+
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+ <li class="file"><a href="../LICENSE.html">LICENSE</a></li>
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+
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+ <li class="file"><a href="../README.html">README</a></li>
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+
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+ </ul>
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+ </div>
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+
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+
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+ <div id="classindex-section" class="section project-section">
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+ <h3 class="section-header">Class/Module Index
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+ <span class="search-toggle"><img src="../images/find.png"
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+ height="16" width="16" alt="[+]"
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+ title="show/hide quicksearch" /></span></h3>
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+ <form action="#" method="get" accept-charset="utf-8" class="initially-hidden">
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+ <fieldset>
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+ <legend>Quicksearch</legend>
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+ <input type="text" name="quicksearch" value=""
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+ class="quicksearch-field" />
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+ </fieldset>
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+ </form>
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+
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+ <ul class="link-list">
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+
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+ <li><a href="../MyExperimentREST.html">MyExperimentREST</a></li>
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+
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+ <li><a href="../MyExperimentREST/MyExperimentIOData.html">MyExperimentREST::MyExperimentIOData</a></li>
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+
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+ <li><a href="../MyExperimentREST/MyExperimentUser.html">MyExperimentREST::MyExperimentUser</a></li>
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+
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+ <li><a href="../MyExperimentREST/MyExperimentWorkflow.html">MyExperimentREST::MyExperimentWorkflow</a></li>
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+
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+ <li><a href="../MyExperimentREST/Urls.html">MyExperimentREST::Urls</a></li>
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+
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+ <li><a href="../MyExperimentREST/User.html">MyExperimentREST::User</a></li>
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+
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+ <li><a href="../MyExperimentREST/Workflow.html">MyExperimentREST::Workflow</a></li>
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+
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+ </ul>
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+ <div id="no-class-search-results" style="display: none;">No matching classes.</div>
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+ </div>
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+
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+
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+ </div>
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+ </div>
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+
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+ <div id="documentation">
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+ <h1 class="class">MyExperimentREST::User</h1>
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+
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+ <div id="description" class="description">
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+
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+ <p>Connects to myExperiment REST API and creates a <em><a
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+ href="MyExperimentUser.html">MyExperimentUser</a></em> object.</p>
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+
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+ </div><!-- description -->
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+
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+ <div id="5Buntitled-5D" class="documentation-section">
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+
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+
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+
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+ <!-- Methods -->
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+
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+ <div id="public-class-method-details" class="method-section section">
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+ <h3 class="section-header">Public Class Methods</h3>
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+
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+
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+ <div id="from_id-method" class="method-detail ">
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+ <a name="method-c-from_id"></a>
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+
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+
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+ <div class="method-heading">
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+ <span class="method-name">from_id</span><span
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+ class="method-args">(user_id)</span>
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+ <span class="method-click-advice">click to toggle source</span>
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+ </div>
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+
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+
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+ <div class="method-description">
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+
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+ <p>Returns a <em><a href="MyExperimentUser.html">MyExperimentUser</a></em>
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+ object given a myExperiment id for that user.</p>
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+
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+
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+ <div class="method-source-code" id="from_id-source">
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+ <pre>
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+ <span class="ruby-comment"># File lib/myexperiment-rest/user.rb, line 31</span>
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+ <span class="ruby-keyword">def</span> <span class="ruby-keyword">self</span>.<span class="ruby-identifier">from_id</span>(<span class="ruby-identifier">user_id</span>)
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+
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+ <span class="ruby-comment"># Get user resource information</span>
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+ <span class="ruby-identifier">xml</span> = <span class="ruby-constant">MyExperimentREST</span>.<span class="ruby-identifier">get_myexperiment_data</span>(<span class="ruby-constant">Urls</span><span class="ruby-operator">::</span><span class="ruby-constant">USER_URL</span>, <span class="ruby-value">:id</span> =<span class="ruby-operator">&gt;</span> <span class="ruby-identifier">user_id</span>)
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+
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+ <span class="ruby-constant">MyExperimentUser</span>.<span class="ruby-identifier">parse</span>(<span class="ruby-identifier">xml</span>)
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+ <span class="ruby-keyword">end</span></pre>
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+ </div><!-- from_id-source -->
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+
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+ </div>
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+
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+ </div><!-- from_id-method -->
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+
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+ <div id="from_uri-method" class="method-detail ">
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+ <a name="method-c-from_uri"></a>
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+
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+ <div class="method-heading">
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+ <span class="method-name">from_uri</span><span
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+ class="method-args">(uri)</span>
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+ <span class="method-click-advice">click to toggle source</span>
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+ </div>
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+
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+
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+ <div class="method-description">
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+
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+ <p>Returns a <em><a href="MyExperimentUser.html">MyExperimentUser</a></em>
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+ object given a URI of the user in the repository as a String.</p>
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+
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+
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+
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+ <div class="method-source-code" id="from_uri-source">
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+ <pre>
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+ <span class="ruby-comment"># File lib/myexperiment-rest/user.rb, line 11</span>
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+ <span class="ruby-keyword">def</span> <span class="ruby-keyword">self</span>.<span class="ruby-identifier">from_uri</span>(<span class="ruby-identifier">uri</span>)
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+
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+ <span class="ruby-identifier">user_id</span> = <span class="ruby-string">''</span>
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+
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+ <span class="ruby-comment"># Get user id - will match both user/74 and users.xml?id=74</span>
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+ <span class="ruby-identifier">uri_id</span> = <span class="ruby-identifier">uri</span>.<span class="ruby-identifier">match</span>(<span class="ruby-regexp">/user.*[\/?](id=)?(\d+)/</span>)
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+ <span class="ruby-keyword">if</span> <span class="ruby-identifier">uri_id</span> <span class="ruby-operator">!=</span> <span class="ruby-keyword">nil</span>
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+ <span class="ruby-identifier">user_id</span> = <span class="ruby-identifier">uri_id</span>[<span class="ruby-value">2</span>]
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+ <span class="ruby-keyword">else</span>
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+ <span class="ruby-identifier">raise</span> <span class="ruby-string">&quot;Could not match user id.&quot;</span>
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+ <span class="ruby-keyword">end</span>
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+
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+ <span class="ruby-comment"># Get user resource information</span>
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+ <span class="ruby-identifier">xml</span> = <span class="ruby-constant">MyExperimentREST</span>.<span class="ruby-identifier">get_myexperiment_data</span>(<span class="ruby-constant">Urls</span><span class="ruby-operator">::</span><span class="ruby-constant">USER_URL</span>, <span class="ruby-value">:id</span> =<span class="ruby-operator">&gt;</span> <span class="ruby-identifier">user_id</span>)
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+
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+ <span class="ruby-constant">MyExperimentUser</span>.<span class="ruby-identifier">parse</span>(<span class="ruby-identifier">xml</span>)
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+ <span class="ruby-keyword">end</span></pre>
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+ </div><!-- from_uri-source -->
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+
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+ </div>
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+ </div><!-- from_uri-method -->
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+ </div><!-- public-class-method-details -->
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+ </div><!-- 5Buntitled-5D -->
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+
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+ </div><!-- documentation -->
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+
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+ <div id="validator-badges">
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+ <p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
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+ <p><small>Generated with the <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish
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+ Rdoc Generator</a> 2</small>.</p>
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+ </div>
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+ </body>
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+ </html>
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+
data/doc/rdoc/MyExperimentREST/{Workflows.html → Workflow.html} RENAMED
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  <head>
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- <title>Class: MyExperimentREST::Workflows</title>
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+ <title>Class: MyExperimentREST::Workflow</title>
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@@ -34,8 +34,8 @@
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  <div class="section-body">
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  <ul>
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- <li><a href="../lib/myexperiment-rest/myexperiment_rest_rb.html?TB_iframe=true&amp;height=550&amp;width=785"
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- class="thickbox" title="lib/myexperiment-rest/myexperiment_rest.rb">lib/myexperiment-rest/myexperiment_rest.rb</a></li>
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+ <li><a href="../lib/myexperiment-rest/workflow_rb.html?TB_iframe=true&amp;height=550&amp;width=785"
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+ class="thickbox" title="lib/myexperiment-rest/workflow.rb">lib/myexperiment-rest/workflow.rb</a></li>
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@@ -65,25 +65,15 @@
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  <h3 class="section-header">Methods</h3>
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- <li><a href="#method-i-read">#read</a></li>
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+ <li><a href="#method-c-from_id_and_version">::from_id_and_version</a></li>
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  </ul>
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@@ -120,13 +110,17 @@
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  <li><a href="../MyExperimentREST.html">MyExperimentREST</a></li>
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- <li><a href="../MyExperimentREST/TavernaIOData.html">MyExperimentREST::TavernaIOData</a></li>
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+ <li><a href="../MyExperimentREST/MyExperimentIOData.html">MyExperimentREST::MyExperimentIOData</a></li>
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+ <li><a href="../MyExperimentREST/MyExperimentUser.html">MyExperimentREST::MyExperimentUser</a></li>
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+ <li><a href="../MyExperimentREST/MyExperimentWorkflow.html">MyExperimentREST::MyExperimentWorkflow</a></li>
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- <li><a href="../MyExperimentREST/TavernaUser.html">MyExperimentREST::TavernaUser</a></li>
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+ <li><a href="../MyExperimentREST/Urls.html">MyExperimentREST::Urls</a></li>
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- <li><a href="../MyExperimentREST/TavernaWorkflow.html">MyExperimentREST::TavernaWorkflow</a></li>
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+ <li><a href="../MyExperimentREST/User.html">MyExperimentREST::User</a></li>
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- <li><a href="../MyExperimentREST/Workflows.html">MyExperimentREST::Workflows</a></li>
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  </ul>
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@@ -137,12 +131,12 @@
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  <p>Connects to myExperiment REST API and creates a <em><a
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- href="TavernaWorkflow.html">TavernaWorkflow</a></em> object.</p>
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+ href="MyExperimentWorkflow.html">MyExperimentWorkflow</a></em> object.</p>
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@@ -155,41 +149,58 @@ href="TavernaWorkflow.html">TavernaWorkflow</a></em> object.</p>
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- <a name="uri"></a>
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+ <!-- Methods -->
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+ <h3 class="section-header">Public Class Methods</h3>
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+ <div id="from_id_and_version-method" class="method-detail ">
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+ <a name="method-c-from_id_and_version"></a>
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- <span class="method-name">uri</span><span
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- class="attribute-access-type">[R]</span>
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+ <div class="method-heading">
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+ <span class="method-name">from_id_and_version</span><span
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+ class="method-args">(id, version='')</span>
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+ <span class="method-click-advice">click to toggle source</span>
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+
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+ <p>Returns a <em><a
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+ href="MyExperimentWorkflow.html">MyExperimentWorkflow</a></em> object given
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+ a myExperiment id and version for that workflow.</p>
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+
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+ <div class="method-source-code" id="from_id_and_version-source">
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+ <pre>
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+ <span class="ruby-comment"># File lib/myexperiment-rest/workflow.rb, line 38</span>
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+ <span class="ruby-keyword">def</span> <span class="ruby-keyword">self</span>.<span class="ruby-identifier">from_id_and_version</span>(<span class="ruby-identifier">id</span>, <span class="ruby-identifier">version</span>=<span class="ruby-string">''</span>)
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+
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+ <span class="ruby-comment"># Get workflow resource information</span>
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+ <span class="ruby-identifier">xml</span> = <span class="ruby-constant">MyExperimentREST</span>.<span class="ruby-identifier">get_myexperiment_data</span>(<span class="ruby-constant">Urls</span><span class="ruby-operator">::</span><span class="ruby-constant">WORKFLOW_URL</span>, <span class="ruby-value">:id</span> =<span class="ruby-operator">&gt;</span> <span class="ruby-identifier">id</span>, <span class="ruby-value">:version</span> =<span class="ruby-operator">&gt;</span> <span class="ruby-identifier">version</span>)
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+
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+ <span class="ruby-constant">MyExperimentWorkflow</span>.<span class="ruby-identifier">parse</span>(<span class="ruby-identifier">xml</span>)
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+ <span class="ruby-keyword">end</span></pre>
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+ </div><!-- from_id_and_version-source -->
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+ </div><!-- from_id_and_version-method -->
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- <a name="method-i-read"></a>
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+ <div id="from_uri-method" class="method-detail ">
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+ <a name="method-c-from_uri"></a>
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  <div class="method-heading">
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  </div>
@@ -197,22 +208,24 @@ href="TavernaWorkflow.html">TavernaWorkflow</a></em> object.</p>
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- <p>Requires the URI of the workflow in the repository as a String.</p>
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+ <p>Returns a <em><a
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+ href="MyExperimentWorkflow.html">MyExperimentWorkflow</a></em> object given
213
+ a URI of the workflow in the repository as a String.</p>
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  <pre>
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- <span class="ruby-comment"># File lib/myexperiment-rest/myexperiment_rest.rb, line 20</span>
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- <span class="ruby-keyword">def</span> <span class="ruby-identifier">read</span>(<span class="ruby-identifier">uri</span>)
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+ <span class="ruby-comment"># File lib/myexperiment-rest/workflow.rb, line 11</span>
220
+ <span class="ruby-keyword">def</span> <span class="ruby-keyword">self</span>.<span class="ruby-identifier">from_uri</span>(<span class="ruby-identifier">uri</span>)
208
221
 
209
222
  <span class="ruby-identifier">workflow_id</span> = <span class="ruby-string">''</span>
210
223
  <span class="ruby-identifier">workflow_version</span> = <span class="ruby-string">''</span>
211
224
 
212
- <span class="ruby-comment"># Get workflow id</span>
213
- <span class="ruby-identifier">uri_id</span> = <span class="ruby-identifier">uri</span>.<span class="ruby-identifier">match</span>(<span class="ruby-regexp">/workflows\/(\d+)/</span>)
225
+ <span class="ruby-comment"># Get workflow id - will match both workflow/74 and workflows.xml?id=74</span>
226
+ <span class="ruby-identifier">uri_id</span> = <span class="ruby-identifier">uri</span>.<span class="ruby-identifier">match</span>(<span class="ruby-regexp">/workflow.*[\/?](id=)?(\d+)/</span>)
214
227
  <span class="ruby-keyword">if</span> <span class="ruby-identifier">uri_id</span> <span class="ruby-operator">!=</span> <span class="ruby-keyword">nil</span>
215
- <span class="ruby-identifier">workflow_id</span> = <span class="ruby-identifier">uri_id</span>[<span class="ruby-value">1</span>]
228
+ <span class="ruby-identifier">workflow_id</span> = <span class="ruby-identifier">uri_id</span>[<span class="ruby-value">2</span>]
216
229
  <span class="ruby-keyword">else</span>
217
230
  <span class="ruby-identifier">raise</span> <span class="ruby-string">&quot;Could not match workflow id.&quot;</span>
218
231
  <span class="ruby-keyword">end</span>
@@ -223,24 +236,22 @@ href="TavernaWorkflow.html">TavernaWorkflow</a></em> object.</p>
223
236
  <span class="ruby-identifier">workflow_version</span> = <span class="ruby-identifier">uri_version</span>[<span class="ruby-value">1</span>]
224
237
  <span class="ruby-keyword">end</span>
225
238
 
226
- <span class="ruby-comment"># Get workflow resource information -- if version is empty it returns the current version</span>
227
- <span class="ruby-identifier">response</span> = <span class="ruby-constant">RestClient</span>.<span class="ruby-identifier">get</span>(<span class="ruby-string">'http://www.myexperiment.org/workflow.xml'</span>, {<span class="ruby-value">:params</span> =<span class="ruby-operator">&gt;</span> {<span class="ruby-string">'id'</span> =<span class="ruby-operator">&gt;</span> <span class="ruby-node">&quot;#{workflow_id}&quot;</span>,
228
- <span class="ruby-string">'version'</span> =<span class="ruby-operator">&gt;</span> <span class="ruby-node">&quot;#{workflow_version}&quot;</span>,
229
- <span class="ruby-string">'elements'</span> =<span class="ruby-operator">&gt;</span> <span class="ruby-string">'title,description,content-uri,components,uploader'</span>} } )
230
-
231
- <span class="ruby-identifier">populate_workflow</span>(<span class="ruby-identifier">response</span>)
239
+ <span class="ruby-comment"># Get workflow resource information </span>
240
+ <span class="ruby-identifier">xml</span> = <span class="ruby-constant">MyExperimentREST</span>.<span class="ruby-identifier">get_myexperiment_data</span>(<span class="ruby-constant">Urls</span><span class="ruby-operator">::</span><span class="ruby-constant">WORKFLOW_URL</span>, <span class="ruby-value">:id</span> =<span class="ruby-operator">&gt;</span> <span class="ruby-identifier">workflow_id</span>, <span class="ruby-value">:version</span> =<span class="ruby-operator">&gt;</span> <span class="ruby-identifier">workflow_version</span>)
241
+
242
+ <span class="ruby-constant">MyExperimentWorkflow</span>.<span class="ruby-identifier">parse</span>(<span class="ruby-identifier">xml</span>)
232
243
  <span class="ruby-keyword">end</span></pre>
233
- </div><!-- read-source -->
244
+ </div><!-- from_uri-source -->
234
245
 
235
246
  </div>
236
247
 
237
248
 
238
249
 
239
250
 
240
- </div><!-- read-method -->
251
+ </div><!-- from_uri-method -->
241
252
 
242
253
 
243
- </div><!-- public-instance-method-details -->
254
+ </div><!-- public-class-method-details -->
244
255
 
245
256
  </div><!-- 5Buntitled-5D -->
246
257