RubyGems - myexperiment-rest - Versions diffs - 0.2.8 → 0.3.0 - Mend

myexperiment-rest 0.2.8 → 0.3.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (26) hide show

data/CHANGES +13 -0
data/README +3 -3
data/Rakefile +4 -9
data/bin/get_workflow_data.rb +27 -9
data/doc/rdoc/CHANGES.html +30 -4
data/doc/rdoc/LICENSE.html +8 -4
data/doc/rdoc/MyExperimentREST.html +101 -10
data/doc/rdoc/MyExperimentREST/{TavernaIOData.html → MyExperimentIOData.html} +76 -14
data/doc/rdoc/MyExperimentREST/{TavernaUser.html → MyExperimentUser.html} +122 -22
data/doc/rdoc/MyExperimentREST/{TavernaWorkflow.html → MyExperimentWorkflow.html} +87 -62
data/doc/rdoc/MyExperimentREST/Urls.html +168 -0
data/doc/rdoc/MyExperimentREST/User.html +260 -0
data/doc/rdoc/MyExperimentREST/{Workflows.html → Workflow.html} +72 -61
data/doc/rdoc/README.html +12 -7
data/doc/rdoc/created.rid +7 -5
data/doc/rdoc/index.html +30 -11
data/doc/rdoc/lib/myexperiment-rest/constants_rb.html +52 -0
data/doc/rdoc/lib/myexperiment-rest/{myexperiment_rest_rb.html → user_rb.html} +2 -8
data/doc/rdoc/lib/myexperiment-rest/workflow_rb.html +54 -0
data/doc/rdoc/lib/myexperiment-rest_rb.html +10 -2
data/lib/myexperiment-rest.rb +42 -1
data/lib/myexperiment-rest/constants.rb +11 -0
data/lib/myexperiment-rest/user.rb +83 -0
data/lib/myexperiment-rest/workflow.rb +145 -0
metadata +21 -15
data/lib/myexperiment-rest/myexperiment_rest.rb +0 -190

data/doc/rdoc/MyExperimentREST/{TavernaUser.html → MyExperimentUser.html} RENAMED

@@ -5,7 +5,7 @@
 <head>
   <meta content="text/html; charset=UTF-8" http-equiv="Content-Type" />
-  <title>Class: MyExperimentREST::TavernaUser</title>
+  <title>Class: MyExperimentREST::MyExperimentUser</title>
   <link rel="stylesheet" href="../rdoc.css" type="text/css" media="screen" />
@@ -34,8 +34,8 @@
         <div class="section-body">
           <ul>
-            <li><a href="../lib/myexperiment-rest/myexperiment_rest_rb.html?TB_iframe=true&amp;height=550&amp;width=785"
-              class="thickbox" title="lib/myexperiment-rest/myexperiment_rest.rb">lib/myexperiment-rest/myexperiment_rest.rb</a></li>
+            <li><a href="../lib/myexperiment-rest/user_rb.html?TB_iframe=true&amp;height=550&amp;width=785"
+              class="thickbox" title="lib/myexperiment-rest/user.rb">lib/myexperiment-rest/user.rb</a></li>
           </ul>
         </div>
@@ -67,6 +67,8 @@
           <li><a href="#method-c-new">::new</a></li>
+          <li><a href="#method-c-parse">::parse</a></li>
         </ul>
       </div>
@@ -108,13 +110,17 @@
           <li><a href="../MyExperimentREST.html">MyExperimentREST</a></li>
-          <li><a href="../MyExperimentREST/TavernaIOData.html">MyExperimentREST::TavernaIOData</a></li>
+          <li><a href="../MyExperimentREST/MyExperimentIOData.html">MyExperimentREST::MyExperimentIOData</a></li>
+          <li><a href="../MyExperimentREST/MyExperimentUser.html">MyExperimentREST::MyExperimentUser</a></li>
-          <li><a href="../MyExperimentREST/TavernaUser.html">MyExperimentREST::TavernaUser</a></li>
+          <li><a href="../MyExperimentREST/MyExperimentWorkflow.html">MyExperimentREST::MyExperimentWorkflow</a></li>
-          <li><a href="../MyExperimentREST/TavernaWorkflow.html">MyExperimentREST::TavernaWorkflow</a></li>
+          <li><a href="../MyExperimentREST/Urls.html">MyExperimentREST::Urls</a></li>
-          <li><a href="../MyExperimentREST/Workflows.html">MyExperimentREST::Workflows</a></li>
+          <li><a href="../MyExperimentREST/User.html">MyExperimentREST::User</a></li>
+          <li><a href="../MyExperimentREST/Workflow.html">MyExperimentREST::Workflow</a></li>
         </ul>
         <div id="no-class-search-results" style="display: none;">No matching classes.</div>
@@ -125,12 +131,12 @@
   </div>
   <div id="documentation">
-    <h1 class="class">MyExperimentREST::TavernaUser</h1>
+    <h1 class="class">MyExperimentREST::MyExperimentUser</h1>
     <div id="description" class="description">
-<p>Contains all available information about an input or output: name,
-descriptions and examples. The last two are lists.</p>
+<p>Contains information about a user. All basic information is available but
+not some of the more advanced like all user’s friends or workflow’s.</p>
     </div><!-- description -->
@@ -148,11 +154,41 @@ descriptions and examples. The last two are lists.</p>
         <h3 class="section-header">Attributes</h3>
-        <div id="avatar-attribute-method" class="method-detail">
-          <a name="avatar"></a>
+        <div id="avatar_uri-attribute-method" class="method-detail">
+          <a name="avatar_uri"></a>
+          <div class="method-heading attribute-method-heading">
+            <span class="method-name">avatar_uri</span><span
+              class="attribute-access-type">[R]</span>
+          </div>
+          <div class="method-description">
+          </div>
+        </div>
+        <div id="city-attribute-method" class="method-detail">
+          <a name="city"></a>
+          <div class="method-heading attribute-method-heading">
+            <span class="method-name">city</span><span
+              class="attribute-access-type">[R]</span>
+          </div>
+          <div class="method-description">
+          </div>
+        </div>
+        <div id="country-attribute-method" class="method-detail">
+          <a name="country"></a>
           <div class="method-heading attribute-method-heading">
-            <span class="method-name">avatar</span><span
+            <span class="method-name">country</span><span
               class="attribute-access-type">[R]</span>
           </div>
@@ -205,6 +241,21 @@ descriptions and examples. The last two are lists.</p>
+          </div>
+        </div>
+        <div id="id-attribute-method" class="method-detail">
+          <a name="id"></a>
+          <div class="method-heading attribute-method-heading">
+            <span class="method-name">id</span><span
+              class="attribute-access-type">[R]</span>
+          </div>
+          <div class="method-description">
           </div>
         </div>
@@ -253,7 +304,7 @@ descriptions and examples. The last two are lists.</p>
           <div class="method-heading">
             <span class="method-name">new</span><span
-              class="method-args">(name, description, email, avatar, website, created_at)</span>
+              class="method-args">(attributes)</span>
             <span class="method-click-advice">click to toggle source</span>
           </div>
@@ -266,14 +317,17 @@ descriptions and examples. The last two are lists.</p>
             <div class="method-source-code" id="new-source">
 <pre>
-<span class="ruby-comment"># File lib/myexperiment-rest/myexperiment_rest.rb, line 176</span>
-<span class="ruby-keyword">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">name</span>, <span class="ruby-identifier">description</span>, <span class="ruby-identifier">email</span>, <span class="ruby-identifier">avatar</span>, <span class="ruby-identifier">website</span>, <span class="ruby-identifier">created_at</span>)
-  <span class="ruby-ivar">@name</span> = <span class="ruby-identifier">name</span>
-  <span class="ruby-ivar">@description</span> = <span class="ruby-identifier">description</span>
-  <span class="ruby-ivar">@email</span> = <span class="ruby-identifier">email</span>
-  <span class="ruby-ivar">@avatar</span> = <span class="ruby-identifier">avatar</span>
-  <span class="ruby-ivar">@website</span> = <span class="ruby-identifier">website</span>
-  <span class="ruby-ivar">@created_at</span> = <span class="ruby-identifier">created_at</span>
+<span class="ruby-comment"># File lib/myexperiment-rest/user.rb, line 50</span>
+<span class="ruby-keyword">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">attributes</span>)
+  <span class="ruby-ivar">@id</span> = <span class="ruby-identifier">attributes</span>[<span class="ruby-value">:id</span>]
+  <span class="ruby-ivar">@created_at</span> = <span class="ruby-identifier">attributes</span>[<span class="ruby-value">:created_at</span>]
+  <span class="ruby-ivar">@name</span> = <span class="ruby-identifier">attributes</span>[<span class="ruby-value">:name</span>]
+  <span class="ruby-ivar">@description</span> = <span class="ruby-identifier">attributes</span>[<span class="ruby-value">:description</span>]
+  <span class="ruby-ivar">@email</span> = <span class="ruby-identifier">attributes</span>[<span class="ruby-value">:email</span>]
+  <span class="ruby-ivar">@avatar_uri</span> = <span class="ruby-identifier">attributes</span>[<span class="ruby-value">:avatar_uri</span>]
+  <span class="ruby-ivar">@city</span> = <span class="ruby-identifier">attributes</span>[<span class="ruby-value">:city</span>]
+  <span class="ruby-ivar">@country</span> = <span class="ruby-identifier">attributes</span>[<span class="ruby-value">:country</span>]
+  <span class="ruby-ivar">@website</span> = <span class="ruby-identifier">attributes</span>[<span class="ruby-value">:website</span>]
 <span class="ruby-keyword">end</span></pre>
             </div><!-- new-source -->
@@ -285,6 +339,52 @@ descriptions and examples. The last two are lists.</p>
         </div><!-- new-method -->
+        <div id="parse-method" class="method-detail ">
+          <a name="method-c-parse"></a>
+          <div class="method-heading">
+            <span class="method-name">parse</span><span
+              class="method-args">(xml)</span>
+            <span class="method-click-advice">click to toggle source</span>
+          </div>
+          <div class="method-description">
+            <p>Acquire data from XML response and instantiate a <em><a
+href="MyExperimentWorkflow.html">MyExperimentWorkflow</a></em> object</p>
+            <div class="method-source-code" id="parse-source">
+<pre>
+<span class="ruby-comment"># File lib/myexperiment-rest/user.rb, line 64</span>
+<span class="ruby-keyword">def</span> <span class="ruby-keyword">self</span>.<span class="ruby-identifier">parse</span>(<span class="ruby-identifier">xml</span>)
+  <span class="ruby-identifier">doc</span> = <span class="ruby-constant">LibXML</span><span class="ruby-operator">::</span><span class="ruby-constant">XML</span><span class="ruby-operator">::</span><span class="ruby-constant">Document</span>.<span class="ruby-identifier">string</span>(<span class="ruby-identifier">xml</span>)
+  <span class="ruby-identifier">new</span>(<span class="ruby-value">:id</span> =<span class="ruby-operator">&gt;</span> <span class="ruby-identifier">doc</span>.<span class="ruby-identifier">find_first</span>(<span class="ruby-string">&quot;/user/id&quot;</span>).<span class="ruby-identifier">content</span>,
+      <span class="ruby-value">:created_at</span> =<span class="ruby-operator">&gt;</span> <span class="ruby-identifier">doc</span>.<span class="ruby-identifier">find_first</span>(<span class="ruby-string">&quot;/user/created-at&quot;</span>).<span class="ruby-identifier">content</span>,
+      <span class="ruby-value">:name</span> =<span class="ruby-operator">&gt;</span> <span class="ruby-identifier">doc</span>.<span class="ruby-identifier">find_first</span>(<span class="ruby-string">&quot;/user/name&quot;</span>).<span class="ruby-identifier">content</span>,
+      <span class="ruby-value">:description</span> =<span class="ruby-operator">&gt;</span> <span class="ruby-identifier">doc</span>.<span class="ruby-identifier">find_first</span>(<span class="ruby-string">&quot;/user/description&quot;</span>).<span class="ruby-identifier">content</span>,
+      <span class="ruby-value">:email</span> =<span class="ruby-operator">&gt;</span> <span class="ruby-identifier">doc</span>.<span class="ruby-identifier">find_first</span>(<span class="ruby-string">&quot;/user/email&quot;</span>).<span class="ruby-identifier">content</span>,
+      <span class="ruby-value">:avatar_uri</span> =<span class="ruby-operator">&gt;</span> <span class="ruby-identifier">doc</span>.<span class="ruby-identifier">find_first</span>(<span class="ruby-string">&quot;/user/avatar&quot;</span>).<span class="ruby-identifier">attributes</span>[<span class="ruby-value">:uri</span>],
+      <span class="ruby-value">:city</span> =<span class="ruby-operator">&gt;</span> <span class="ruby-identifier">doc</span>.<span class="ruby-identifier">find_first</span>(<span class="ruby-string">&quot;/user/city&quot;</span>).<span class="ruby-identifier">content</span>,
+      <span class="ruby-value">:country</span> =<span class="ruby-operator">&gt;</span> <span class="ruby-identifier">doc</span>.<span class="ruby-identifier">find_first</span>(<span class="ruby-string">&quot;/user/country&quot;</span>).<span class="ruby-identifier">content</span>,
+      <span class="ruby-value">:website</span> =<span class="ruby-operator">&gt;</span> <span class="ruby-identifier">doc</span>.<span class="ruby-identifier">find_first</span>(<span class="ruby-string">&quot;/user/website&quot;</span>).<span class="ruby-identifier">content</span>)
+<span class="ruby-keyword">end</span></pre>
+            </div><!-- parse-source -->
+          </div>
+        </div><!-- parse-method -->
       </div><!-- public-class-method-details -->
     </div><!-- 5Buntitled-5D -->

data/doc/rdoc/MyExperimentREST/{TavernaWorkflow.html → MyExperimentWorkflow.html} RENAMED

@@ -5,7 +5,7 @@
 <head>
   <meta content="text/html; charset=UTF-8" http-equiv="Content-Type" />
-  <title>Class: MyExperimentREST::TavernaWorkflow</title>
+  <title>Class: MyExperimentREST::MyExperimentWorkflow</title>
   <link rel="stylesheet" href="../rdoc.css" type="text/css" media="screen" />
@@ -34,8 +34,8 @@
         <div class="section-body">
           <ul>
-            <li><a href="../lib/myexperiment-rest/myexperiment_rest_rb.html?TB_iframe=true&amp;height=550&amp;width=785"
-              class="thickbox" title="lib/myexperiment-rest/myexperiment_rest.rb">lib/myexperiment-rest/myexperiment_rest.rb</a></li>
+            <li><a href="../lib/myexperiment-rest/workflow_rb.html?TB_iframe=true&amp;height=550&amp;width=785"
+              class="thickbox" title="lib/myexperiment-rest/workflow.rb">lib/myexperiment-rest/workflow.rb</a></li>
           </ul>
         </div>
@@ -67,6 +67,8 @@
           <li><a href="#method-c-new">::new</a></li>
+          <li><a href="#method-c-parse">::parse</a></li>
         </ul>
       </div>
@@ -108,13 +110,17 @@
           <li><a href="../MyExperimentREST.html">MyExperimentREST</a></li>
-          <li><a href="../MyExperimentREST/TavernaIOData.html">MyExperimentREST::TavernaIOData</a></li>
+          <li><a href="../MyExperimentREST/MyExperimentIOData.html">MyExperimentREST::MyExperimentIOData</a></li>
+          <li><a href="../MyExperimentREST/MyExperimentUser.html">MyExperimentREST::MyExperimentUser</a></li>
-          <li><a href="../MyExperimentREST/TavernaUser.html">MyExperimentREST::TavernaUser</a></li>
+          <li><a href="../MyExperimentREST/MyExperimentWorkflow.html">MyExperimentREST::MyExperimentWorkflow</a></li>
-          <li><a href="../MyExperimentREST/TavernaWorkflow.html">MyExperimentREST::TavernaWorkflow</a></li>
+          <li><a href="../MyExperimentREST/Urls.html">MyExperimentREST::Urls</a></li>
-          <li><a href="../MyExperimentREST/Workflows.html">MyExperimentREST::Workflows</a></li>
+          <li><a href="../MyExperimentREST/User.html">MyExperimentREST::User</a></li>
+          <li><a href="../MyExperimentREST/Workflow.html">MyExperimentREST::Workflow</a></li>
         </ul>
         <div id="no-class-search-results" style="display: none;">No matching classes.</div>
@@ -125,21 +131,19 @@
   </div>
   <div id="documentation">
-    <h1 class="class">MyExperimentREST::TavernaWorkflow</h1>
+    <h1 class="class">MyExperimentREST::MyExperimentWorkflow</h1>
     <div id="description" class="description">
 <p>Contains all available information about a workflow: <em><a
-href="TavernaWorkflow.html#attribute-i-input_type">input_type</a></em>,
-<em><a href="TavernaWorkflow.html#attribute-i-xml_uri">xml_uri</a></em>,
+href="MyExperimentWorkflow.html#attribute-i-xml_uri">xml_uri</a></em>,
 <em>title</em>, <em>description</em>,<em>inputs</em>, <em>outputs</em> and
-<em>user</em>. The <em><a
-href="TavernaWorkflow.html#attribute-i-xml_uri">xml_uri</a></em> specifies
-the XML description on myExperiment and not the XML of the workflow itself.
 <em><a
-href="TavernaWorkflow.html#attribute-i-input_type">input_type</a></em>
-specifies the kind of input. Currently, either “myexperiment”
-(myExperiment’s xml uri) or “t2flow” (filename)</p>
+href="MyExperimentWorkflow.html#attribute-i-uploader_uri">uploader_uri</a></em>.
+The <em><a
+href="MyExperimentWorkflow.html#attribute-i-xml_uri">xml_uri</a></em>
+specifies the XML description on myExperiment and not the XML of the
+workflow itself.</p>
     </div><!-- description -->
@@ -150,24 +154,6 @@ specifies the kind of input. Currently, either “myexperiment”
-      <!-- Constants -->
-      <div id="constants-list" class="section">
-        <h3 class="section-header">Constants</h3>
-        <dl>
-          <dt><a name="MY_EXPERIMENT">MY_EXPERIMENT</a></dt>
-          <dd class="description"><p>possible input types</p></dd>
-          <dt><a name="T2_FLOW">T2_FLOW</a></dt>
-          <dd class="description"></dd>
-        </dl>
-      </div>
       <!-- Attributes -->
@@ -187,21 +173,6 @@ specifies the kind of input. Currently, either “myexperiment”
-          </div>
-        </div>
-        <div id="input_type-attribute-method" class="method-detail">
-          <a name="input_type"></a>
-          <div class="method-heading attribute-method-heading">
-            <span class="method-name">input_type</span><span
-              class="attribute-access-type">[R]</span>
-          </div>
-          <div class="method-description">
           </div>
         </div>
@@ -250,11 +221,11 @@ specifies the kind of input. Currently, either “myexperiment”
           </div>
         </div>
-        <div id="user-attribute-method" class="method-detail">
-          <a name="user"></a>
+        <div id="uploader_uri-attribute-method" class="method-detail">
+          <a name="uploader_uri"></a>
           <div class="method-heading attribute-method-heading">
-            <span class="method-name">user</span><span
+            <span class="method-name">uploader_uri</span><span
               class="attribute-access-type">[R]</span>
           </div>
@@ -295,7 +266,7 @@ specifies the kind of input. Currently, either “myexperiment”
           <div class="method-heading">
             <span class="method-name">new</span><span
-              class="method-args">(input_type, xml_uri, title, description, inputs, outputs, user)</span>
+              class="method-args">(attributes)</span>
             <span class="method-click-advice">click to toggle source</span>
           </div>
@@ -308,15 +279,14 @@ specifies the kind of input. Currently, either “myexperiment”
             <div class="method-source-code" id="new-source">
 <pre>
-<span class="ruby-comment"># File lib/myexperiment-rest/myexperiment_rest.rb, line 137</span>
-<span class="ruby-keyword">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">input_type</span>, <span class="ruby-identifier">xml_uri</span>, <span class="ruby-identifier">title</span>, <span class="ruby-identifier">description</span>, <span class="ruby-identifier">inputs</span>, <span class="ruby-identifier">outputs</span>, <span class="ruby-identifier">user</span>)
-  <span class="ruby-ivar">@input_type</span> = <span class="ruby-identifier">input_type</span>
-  <span class="ruby-ivar">@xml_uri</span> = <span class="ruby-identifier">xml_uri</span>
-  <span class="ruby-ivar">@title</span> = <span class="ruby-identifier">title</span>
-  <span class="ruby-ivar">@description</span> = <span class="ruby-identifier">description</span>
-  <span class="ruby-ivar">@inputs</span> = <span class="ruby-identifier">inputs</span>
-  <span class="ruby-ivar">@outputs</span> = <span class="ruby-identifier">outputs</span>
-  <span class="ruby-ivar">@user</span> = <span class="ruby-identifier">user</span>
+<span class="ruby-comment"># File lib/myexperiment-rest/workflow.rb, line 61</span>
+<span class="ruby-keyword">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">attributes</span>)
+  <span class="ruby-ivar">@xml_uri</span> = <span class="ruby-identifier">attributes</span>[<span class="ruby-value">:xml_uri</span>]
+  <span class="ruby-ivar">@title</span> = <span class="ruby-identifier">attributes</span>[<span class="ruby-value">:title</span>]
+  <span class="ruby-ivar">@description</span> = <span class="ruby-identifier">attributes</span>[<span class="ruby-value">:description</span>]
+  <span class="ruby-ivar">@inputs</span> = <span class="ruby-identifier">attributes</span>[<span class="ruby-value">:inputs</span>]
+  <span class="ruby-ivar">@outputs</span> = <span class="ruby-identifier">attributes</span>[<span class="ruby-value">:outputs</span>]
+  <span class="ruby-ivar">@uploader_uri</span> = <span class="ruby-identifier">attributes</span>[<span class="ruby-value">:uploader_uri</span>]
 <span class="ruby-keyword">end</span></pre>
             </div><!-- new-source -->
@@ -328,6 +298,61 @@ specifies the kind of input. Currently, either “myexperiment”
         </div><!-- new-method -->
+        <div id="parse-method" class="method-detail ">
+          <a name="method-c-parse"></a>
+          <div class="method-heading">
+            <span class="method-name">parse</span><span
+              class="method-args">(xml)</span>
+            <span class="method-click-advice">click to toggle source</span>
+          </div>
+          <div class="method-description">
+            <p>Parse workflow information XML and instantiate a <em><a
+href="MyExperimentWorkflow.html">MyExperimentWorkflow</a></em> object</p>
+            <div class="method-source-code" id="parse-source">
+<pre>
+<span class="ruby-comment"># File lib/myexperiment-rest/workflow.rb, line 71</span>
+<span class="ruby-keyword">def</span> <span class="ruby-keyword">self</span>.<span class="ruby-identifier">parse</span>(<span class="ruby-identifier">xml</span>)
+  <span class="ruby-identifier">wkf_inputs</span> = []
+  <span class="ruby-identifier">wkf_outputs</span> = []
+  <span class="ruby-identifier">doc</span> = <span class="ruby-constant">LibXML</span><span class="ruby-operator">::</span><span class="ruby-constant">XML</span><span class="ruby-operator">::</span><span class="ruby-constant">Document</span>.<span class="ruby-identifier">string</span>(<span class="ruby-identifier">xml</span>)
+  <span class="ruby-identifier">doc</span>.<span class="ruby-identifier">find</span>(<span class="ruby-string">&quot;//workflow/components/dataflows/dataflow[@role='top']/sources/source&quot;</span>).<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">element</span><span class="ruby-operator">|</span>
+    <span class="ruby-identifier">wkf_inputs</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-constant">MyExperimentIOData</span>.<span class="ruby-identifier">from_xml</span>(<span class="ruby-identifier">element</span>)
+  <span class="ruby-keyword">end</span>
+  <span class="ruby-identifier">doc</span>.<span class="ruby-identifier">find</span>(<span class="ruby-string">&quot;//workflow/components/dataflows/dataflow[@role='top']/sinks/sink&quot;</span>).<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">element</span><span class="ruby-operator">|</span>
+    <span class="ruby-identifier">wkf_outputs</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-constant">MyExperimentIOData</span>.<span class="ruby-identifier">from_xml</span>(<span class="ruby-identifier">element</span>)
+  <span class="ruby-keyword">end</span>
+  <span class="ruby-identifier">new</span>(<span class="ruby-value">:xml_uri</span> =<span class="ruby-operator">&gt;</span> <span class="ruby-identifier">doc</span>.<span class="ruby-identifier">find_first</span>(<span class="ruby-string">&quot;/workflow/content-uri&quot;</span>).<span class="ruby-identifier">content</span>,
+      <span class="ruby-value">:title</span> =<span class="ruby-operator">&gt;</span> <span class="ruby-identifier">doc</span>.<span class="ruby-identifier">find_first</span>(<span class="ruby-string">&quot;/workflow/title&quot;</span>).<span class="ruby-identifier">content</span>,
+      <span class="ruby-value">:description</span> =<span class="ruby-operator">&gt;</span> <span class="ruby-identifier">doc</span>.<span class="ruby-identifier">find_first</span>(<span class="ruby-string">&quot;/workflow/description&quot;</span>).<span class="ruby-identifier">content</span>,
+      <span class="ruby-value">:inputs</span> =<span class="ruby-operator">&gt;</span> <span class="ruby-identifier">wkf_inputs</span>,
+      <span class="ruby-value">:outputs</span> =<span class="ruby-operator">&gt;</span> <span class="ruby-identifier">wkf_outputs</span>,
+      <span class="ruby-value">:uploader_uri</span> =<span class="ruby-operator">&gt;</span> <span class="ruby-identifier">doc</span>.<span class="ruby-identifier">find_first</span>(<span class="ruby-string">&quot;/workflow/uploader&quot;</span>).<span class="ruby-identifier">attributes</span>[<span class="ruby-string">'uri'</span>])
+<span class="ruby-keyword">end</span></pre>
+            </div><!-- parse-source -->
+          </div>
+        </div><!-- parse-method -->
       </div><!-- public-class-method-details -->
     </div><!-- 5Buntitled-5D -->

data/doc/rdoc/MyExperimentREST/Urls.html ADDED

@@ -0,0 +1,168 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN"
+  "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
+<head>
+  <meta content="text/html; charset=UTF-8" http-equiv="Content-Type" />
+  <title>Module: MyExperimentREST::Urls</title>
+  <link rel="stylesheet" href="../rdoc.css" type="text/css" media="screen" />
+  <script src="../js/jquery.js" type="text/javascript" charset="utf-8"></script>
+  <script src="../js/thickbox-compressed.js" type="text/javascript" charset="utf-8"></script>
+  <script src="../js/quicksearch.js" type="text/javascript" charset="utf-8"></script>
+  <script src="../js/darkfish.js" type="text/javascript" charset="utf-8"></script>
+</head>
+<body id="top" class="module">
+  <div id="metadata">
+    <div id="home-metadata">
+      <div id="home-section" class="section">
+        <h3 class="section-header">
+          <a href="../index.html">Home</a>
+          <a href="../index.html#classes">Classes</a>
+          <a href="../index.html#methods">Methods</a>
+        </h3>
+      </div>
+    </div>
+    <div id="file-metadata">
+      <div id="file-list-section" class="section">
+        <h3 class="section-header">In Files</h3>
+        <div class="section-body">
+          <ul>
+            <li><a href="../lib/myexperiment-rest/constants_rb.html?TB_iframe=true&amp;height=550&amp;width=785"
+              class="thickbox" title="lib/myexperiment-rest/constants.rb">lib/myexperiment-rest/constants.rb</a></li>
+          </ul>
+        </div>
+      </div>
+    </div>
+    <div id="class-metadata">
+    </div>
+    <div id="project-metadata">
+      <div id="fileindex-section" class="section project-section">
+        <h3 class="section-header">Files</h3>
+        <ul>
+          <li class="file"><a href="../CHANGES.html">CHANGES</a></li>
+          <li class="file"><a href="../LICENSE.html">LICENSE</a></li>
+          <li class="file"><a href="../README.html">README</a></li>
+        </ul>
+      </div>
+      <div id="classindex-section" class="section project-section">
+        <h3 class="section-header">Class/Module Index
+          <span class="search-toggle"><img src="../images/find.png"
+            height="16" width="16" alt="[+]"
+            title="show/hide quicksearch" /></span></h3>
+        <form action="#" method="get" accept-charset="utf-8" class="initially-hidden">
+        <fieldset>
+          <legend>Quicksearch</legend>
+          <input type="text" name="quicksearch" value=""
+            class="quicksearch-field" />
+        </fieldset>
+        </form>
+        <ul class="link-list">
+          <li><a href="../MyExperimentREST.html">MyExperimentREST</a></li>
+          <li><a href="../MyExperimentREST/MyExperimentIOData.html">MyExperimentREST::MyExperimentIOData</a></li>
+          <li><a href="../MyExperimentREST/MyExperimentUser.html">MyExperimentREST::MyExperimentUser</a></li>
+          <li><a href="../MyExperimentREST/MyExperimentWorkflow.html">MyExperimentREST::MyExperimentWorkflow</a></li>
+          <li><a href="../MyExperimentREST/Urls.html">MyExperimentREST::Urls</a></li>
+          <li><a href="../MyExperimentREST/User.html">MyExperimentREST::User</a></li>
+          <li><a href="../MyExperimentREST/Workflow.html">MyExperimentREST::Workflow</a></li>
+        </ul>
+        <div id="no-class-search-results" style="display: none;">No matching classes.</div>
+      </div>
+    </div>
+  </div>
+  <div id="documentation">
+    <h1 class="module">MyExperimentREST::Urls</h1>
+    <div id="description" class="description">
+    </div><!-- description -->
+    <div id="5Buntitled-5D" class="documentation-section">
+      <!-- Constants -->
+      <div id="constants-list" class="section">
+        <h3 class="section-header">Constants</h3>
+        <dl>
+          <dt><a name="MYEXPERIMENT_URL">MYEXPERIMENT_URL</a></dt>
+          <dd class="description"><p>URL constants</p></dd>
+          <dt><a name="USER_URL">USER_URL</a></dt>
+          <dd class="description"></dd>
+          <dt><a name="WORKFLOW_URL">WORKFLOW_URL</a></dt>
+          <dd class="description"></dd>
+        </dl>
+      </div>
+      <!-- Methods -->
+    </div><!-- 5Buntitled-5D -->
+  </div><!-- documentation -->
+  <div id="validator-badges">
+    <p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
+    <p><small>Generated with the <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish
+      Rdoc Generator</a> 2</small>.</p>
+  </div>
+</body>
+</html>