mspire 0.2.4 → 0.3.0

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Files changed (233) hide show
  1. data/INSTALL +1 -0
  2. data/README +25 -0
  3. data/Rakefile +129 -40
  4. data/bin/{find_aa_freq.rb → aafreqs.rb} +2 -2
  5. data/bin/bioworks_to_pepxml.rb +1 -0
  6. data/bin/fasta_shaker.rb +1 -96
  7. data/bin/filter_and_validate.rb +5 -0
  8. data/bin/{mzxml_to_lmat.rb → ms_to_lmat.rb} +8 -7
  9. data/bin/prob_validate.rb +6 -0
  10. data/bin/raw_to_mzXML.rb +2 -2
  11. data/bin/srf_group.rb +1 -0
  12. data/bin/srf_to_sqt.rb +40 -0
  13. data/changelog.txt +68 -0
  14. data/lib/align/chams.rb +6 -6
  15. data/lib/align.rb +4 -3
  16. data/lib/bsearch.rb +120 -0
  17. data/lib/fasta.rb +318 -86
  18. data/lib/group_by.rb +10 -0
  19. data/lib/index_by.rb +11 -0
  20. data/lib/merge_deep.rb +21 -0
  21. data/lib/{spec → ms/converter}/mzxml.rb +77 -109
  22. data/lib/ms/gradient_program.rb +171 -0
  23. data/lib/ms/msrun.rb +209 -0
  24. data/lib/{spec/msrun.rb → ms/msrun_index.rb} +7 -40
  25. data/lib/ms/parser/mzdata/axml.rb +12 -0
  26. data/lib/ms/parser/mzdata/dom.rb +160 -0
  27. data/lib/ms/parser/mzdata/libxml.rb +7 -0
  28. data/lib/ms/parser/mzdata.rb +25 -0
  29. data/lib/ms/parser/mzxml/axml.rb +11 -0
  30. data/lib/ms/parser/mzxml/dom.rb +159 -0
  31. data/lib/ms/parser/mzxml/hpricot.rb +253 -0
  32. data/lib/ms/parser/mzxml/libxml.rb +15 -0
  33. data/lib/ms/parser/mzxml/regexp.rb +122 -0
  34. data/lib/ms/parser/mzxml/rexml.rb +72 -0
  35. data/lib/ms/parser/mzxml/xmlparser.rb +248 -0
  36. data/lib/ms/parser/mzxml.rb +175 -0
  37. data/lib/ms/parser.rb +108 -0
  38. data/lib/ms/precursor.rb +10 -0
  39. data/lib/ms/scan.rb +81 -0
  40. data/lib/ms/spectrum.rb +193 -0
  41. data/lib/ms.rb +10 -0
  42. data/lib/mspire.rb +4 -0
  43. data/lib/roc.rb +61 -1
  44. data/lib/sample_enzyme.rb +31 -8
  45. data/lib/scan_i.rb +21 -0
  46. data/lib/spec_id/aa_freqs.rb +7 -3
  47. data/lib/spec_id/bioworks.rb +20 -14
  48. data/lib/spec_id/digestor.rb +139 -0
  49. data/lib/spec_id/mass.rb +116 -0
  50. data/lib/spec_id/parser/proph.rb +236 -0
  51. data/lib/spec_id/precision/filter/cmdline.rb +209 -0
  52. data/lib/spec_id/precision/filter/interactive.rb +134 -0
  53. data/lib/spec_id/precision/filter/output.rb +147 -0
  54. data/lib/spec_id/precision/filter.rb +623 -0
  55. data/lib/spec_id/precision/output.rb +60 -0
  56. data/lib/spec_id/precision/prob/cmdline.rb +139 -0
  57. data/lib/spec_id/precision/prob/output.rb +88 -0
  58. data/lib/spec_id/precision/prob.rb +171 -0
  59. data/lib/spec_id/proph/pep_summary.rb +92 -0
  60. data/lib/spec_id/proph/prot_summary.rb +484 -0
  61. data/lib/spec_id/proph.rb +2 -466
  62. data/lib/spec_id/protein_summary.rb +2 -2
  63. data/lib/spec_id/sequest/params.rb +316 -0
  64. data/lib/spec_id/sequest/pepxml.rb +1513 -0
  65. data/lib/spec_id/sequest.rb +2 -1672
  66. data/lib/spec_id/srf.rb +445 -177
  67. data/lib/spec_id.rb +183 -95
  68. data/lib/spec_id_xml.rb +8 -10
  69. data/lib/transmem/phobius.rb +147 -0
  70. data/lib/transmem/toppred.rb +368 -0
  71. data/lib/transmem.rb +157 -0
  72. data/lib/validator/aa.rb +135 -0
  73. data/lib/validator/background.rb +73 -0
  74. data/lib/validator/bias.rb +95 -0
  75. data/lib/validator/cmdline.rb +260 -0
  76. data/lib/validator/decoy.rb +94 -0
  77. data/lib/validator/digestion_based.rb +69 -0
  78. data/lib/validator/probability.rb +48 -0
  79. data/lib/validator/prot_from_pep.rb +234 -0
  80. data/lib/validator/transmem.rb +272 -0
  81. data/lib/validator/true_pos.rb +46 -0
  82. data/lib/validator.rb +214 -0
  83. data/lib/xml.rb +38 -0
  84. data/lib/xml_style_parser.rb +105 -0
  85. data/lib/xmlparser_wrapper.rb +19 -0
  86. data/script/compile_and_plot_smriti_final.rb +97 -0
  87. data/script/extract_gradient_programs.rb +56 -0
  88. data/script/get_apex_values_rexml.rb +44 -0
  89. data/script/mzXML2timeIndex.rb +1 -1
  90. data/script/smriti_final_analysis.rb +103 -0
  91. data/script/toppred_to_yaml.rb +47 -0
  92. data/script/tpp_installer.rb +1 -1
  93. data/{test/tc_align.rb → specs/align_spec.rb} +21 -27
  94. data/{test/tc_bioworks_to_pepxml.rb → specs/bin/bioworks_to_pepxml_spec.rb} +25 -41
  95. data/specs/bin/fasta_shaker_spec.rb +259 -0
  96. data/specs/bin/filter_and_validate__multiple_vals_helper.yaml +202 -0
  97. data/specs/bin/filter_and_validate_spec.rb +124 -0
  98. data/specs/bin/ms_to_lmat_spec.rb +34 -0
  99. data/specs/bin/prob_validate_spec.rb +62 -0
  100. data/specs/bin/protein_summary_spec.rb +10 -0
  101. data/{test/tc_fasta.rb → specs/fasta_spec.rb} +354 -310
  102. data/specs/gi_spec.rb +22 -0
  103. data/specs/load_bin_path.rb +7 -0
  104. data/specs/merge_deep_spec.rb +13 -0
  105. data/specs/ms/gradient_program_spec.rb +77 -0
  106. data/specs/ms/msrun_spec.rb +455 -0
  107. data/specs/ms/parser_spec.rb +92 -0
  108. data/specs/ms/spectrum_spec.rb +89 -0
  109. data/specs/roc_spec.rb +251 -0
  110. data/specs/rspec_autotest.rb +149 -0
  111. data/specs/sample_enzyme_spec.rb +41 -0
  112. data/specs/spec_helper.rb +133 -0
  113. data/specs/spec_id/aa_freqs_spec.rb +52 -0
  114. data/{test/tc_bioworks.rb → specs/spec_id/bioworks_spec.rb} +56 -71
  115. data/specs/spec_id/digestor_spec.rb +75 -0
  116. data/specs/spec_id/precision/filter/cmdline_spec.rb +20 -0
  117. data/specs/spec_id/precision/filter/output_spec.rb +31 -0
  118. data/specs/spec_id/precision/filter_spec.rb +243 -0
  119. data/specs/spec_id/precision/prob_spec.rb +111 -0
  120. data/specs/spec_id/precision/prob_spec_helper.rb +0 -0
  121. data/specs/spec_id/proph/pep_summary_spec.rb +143 -0
  122. data/{test/tc_proph.rb → specs/spec_id/proph/prot_summary_spec.rb} +52 -32
  123. data/{test/tc_protein_summary.rb → specs/spec_id/protein_summary_spec.rb} +85 -0
  124. data/specs/spec_id/sequest/params_spec.rb +68 -0
  125. data/specs/spec_id/sequest/pepxml_spec.rb +452 -0
  126. data/specs/spec_id/sqt_spec.rb +138 -0
  127. data/specs/spec_id/srf_spec.rb +209 -0
  128. data/specs/spec_id/srf_spec_helper.rb +302 -0
  129. data/specs/spec_id_helper.rb +33 -0
  130. data/specs/spec_id_spec.rb +361 -0
  131. data/specs/spec_id_xml_spec.rb +33 -0
  132. data/specs/transmem/phobius_spec.rb +423 -0
  133. data/specs/transmem/toppred_spec.rb +297 -0
  134. data/specs/transmem_spec.rb +60 -0
  135. data/specs/transmem_spec_shared.rb +64 -0
  136. data/specs/validator/aa_spec.rb +107 -0
  137. data/specs/validator/background_spec.rb +51 -0
  138. data/specs/validator/bias_spec.rb +146 -0
  139. data/specs/validator/decoy_spec.rb +51 -0
  140. data/specs/validator/fasta_helper.rb +26 -0
  141. data/specs/validator/prot_from_pep_spec.rb +141 -0
  142. data/specs/validator/transmem_spec.rb +145 -0
  143. data/specs/validator/true_pos_spec.rb +58 -0
  144. data/specs/validator_helper.rb +33 -0
  145. data/specs/xml_spec.rb +12 -0
  146. data/test_files/000_pepxml18_small.xml +206 -0
  147. data/test_files/020a.mzXML.timeIndex +4710 -0
  148. data/test_files/4-03-03_mzXML/000.mzXML.timeIndex +3973 -0
  149. data/test_files/4-03-03_mzXML/020.mzXML.timeIndex +3872 -0
  150. data/test_files/4-03-03_small-prot.xml +321 -0
  151. data/test_files/4-03-03_small.xml +3876 -0
  152. data/test_files/7MIX_STD_110802_1.sequest_params_fragment.srf +0 -0
  153. data/test_files/bioworks-3.3_10prots.xml +5999 -0
  154. data/test_files/bioworks31.params +77 -0
  155. data/test_files/bioworks32.params +62 -0
  156. data/test_files/bioworks33.params +63 -0
  157. data/test_files/bioworks_single_run_small.xml +7237 -0
  158. data/test_files/bioworks_small.fasta +212 -0
  159. data/test_files/bioworks_small.params +63 -0
  160. data/test_files/bioworks_small.phobius +109 -0
  161. data/test_files/bioworks_small.toppred.out +2847 -0
  162. data/test_files/bioworks_small.xml +5610 -0
  163. data/test_files/bioworks_with_INV_small.xml +3753 -0
  164. data/test_files/bioworks_with_SHUFF_small.xml +2503 -0
  165. data/test_files/corrupted_900.srf +0 -0
  166. data/test_files/head_of_7MIX.srf +0 -0
  167. data/test_files/interact-opd1_mods_small-prot.xml +304 -0
  168. data/test_files/messups.fasta +297 -0
  169. data/test_files/opd1/000.my_answer.100lines.xml +101 -0
  170. data/test_files/opd1/000.tpp_1.2.3.first10.xml +115 -0
  171. data/test_files/opd1/000.tpp_2.9.2.first10.xml +126 -0
  172. data/test_files/opd1/000.v2.1.mzXML.timeIndex +3748 -0
  173. data/test_files/opd1/000_020-prot.png +0 -0
  174. data/test_files/opd1/000_020_3prots-prot.mod_initprob.xml +62 -0
  175. data/test_files/opd1/000_020_3prots-prot.xml +62 -0
  176. data/test_files/opd1/opd1_cat_inv_small-prot.xml +139 -0
  177. data/test_files/opd1/sequest.3.1.params +77 -0
  178. data/test_files/opd1/sequest.3.2.params +62 -0
  179. data/test_files/opd1/twenty_scans.mzXML +418 -0
  180. data/test_files/opd1/twenty_scans.v2.1.mzXML +382 -0
  181. data/test_files/opd1/twenty_scans_answ.lmat +0 -0
  182. data/test_files/opd1/twenty_scans_answ.lmata +9 -0
  183. data/test_files/opd1_020_beginning.RAW +0 -0
  184. data/test_files/opd1_2runs_2mods/interact-opd1_mods__small.xml +753 -0
  185. data/test_files/orbitrap_mzData/000_cut.xml +1920 -0
  186. data/test_files/pepproph_small.xml +4691 -0
  187. data/test_files/phobius.small.noheader.txt +50 -0
  188. data/test_files/phobius.small.small.txt +53 -0
  189. data/test_files/s01_anC1_ld020mM.key.txt +25 -0
  190. data/test_files/s01_anC1_ld020mM.meth +0 -0
  191. data/test_files/small.fasta +297 -0
  192. data/test_files/smallraw.RAW +0 -0
  193. data/test_files/tf_bioworks2excel.bioXML +14340 -0
  194. data/test_files/tf_bioworks2excel.txt.actual +1035 -0
  195. data/test_files/toppred.small.out +416 -0
  196. data/test_files/toppred.xml.out +318 -0
  197. data/test_files/validator_hits_separate/bias_bioworks_small_HS.fasta +7 -0
  198. data/test_files/validator_hits_separate/bioworks_small_HS.xml +5651 -0
  199. data/test_files/yeast_gly_small-prot.xml +265 -0
  200. data/test_files/yeast_gly_small.1.0_1.0_1.0.parentTimes +6 -0
  201. data/test_files/yeast_gly_small.xml +3807 -0
  202. data/test_files/yeast_gly_small2.parentTimes +6 -0
  203. metadata +273 -57
  204. data/bin/filter.rb +0 -6
  205. data/bin/precision.rb +0 -5
  206. data/lib/spec/mzdata/parser.rb +0 -108
  207. data/lib/spec/mzdata.rb +0 -48
  208. data/lib/spec/mzxml/parser.rb +0 -449
  209. data/lib/spec/scan.rb +0 -55
  210. data/lib/spec_id/filter.rb +0 -797
  211. data/lib/spec_id/precision.rb +0 -421
  212. data/lib/toppred.rb +0 -18
  213. data/script/filter-peps.rb +0 -164
  214. data/test/tc_aa_freqs.rb +0 -59
  215. data/test/tc_fasta_shaker.rb +0 -149
  216. data/test/tc_filter.rb +0 -203
  217. data/test/tc_filter_peps.rb +0 -46
  218. data/test/tc_gi.rb +0 -17
  219. data/test/tc_id_class_anal.rb +0 -70
  220. data/test/tc_id_precision.rb +0 -89
  221. data/test/tc_msrun.rb +0 -88
  222. data/test/tc_mzxml.rb +0 -88
  223. data/test/tc_mzxml_to_lmat.rb +0 -36
  224. data/test/tc_peptide_parent_times.rb +0 -27
  225. data/test/tc_precision.rb +0 -60
  226. data/test/tc_roc.rb +0 -166
  227. data/test/tc_sample_enzyme.rb +0 -32
  228. data/test/tc_scan.rb +0 -26
  229. data/test/tc_sequest.rb +0 -336
  230. data/test/tc_spec.rb +0 -78
  231. data/test/tc_spec_id.rb +0 -201
  232. data/test/tc_spec_id_xml.rb +0 -36
  233. data/test/tc_srf.rb +0 -262
data/test_files/bioworks_with_INV_small.xml ADDED
@@ -0,0 +1,3753 @@
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+ <?xml version="1.0"?>
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+ <sequestresults xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="schema1.xsd">
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+ <bioworksinfo>3.2 EF1</bioworksinfo>
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+ <protein>
5
+ <reference>gi|7427923|pir||PHRBG glycogen phosphorylase (EC 2.4.1.1), muscle - rabbit</reference>
6
+ <protein_probability>5.76E-10</protein_probability>
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+ <consensus_score>250.3</consensus_score>
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+ <Sf>0.00</Sf>
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+ <unified_score>0</unified_score>
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+ <coverage>0.0</coverage>
11
+ <pI>0.0</pI>
12
+ <weight>97288.8</weight>
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+ <accession>7427923</accession>
14
+ <peptide>
15
+ <file>7MIX_STD_110802_1, 137</file>
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+ <sequence>R.NLAENISR.V</sequence>
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+ <mass>917.00</mass>
18
+ <deltamass>0.31</deltamass>
19
+ <charge>2</charge>
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+ <peptide_probability>5.76E-10</peptide_probability>
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+ <xcorr>2.453</xcorr>
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+ <deltacn>0.124</deltacn>
23
+ <sp>623.3</sp>
24
+ <rsp>2</rsp>
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+ <ions>12/14</ions>
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+ <count>0</count>
27
+ <tic>4041</tic>
28
+ </peptide>
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+ <peptide>
30
+ <file>7MIX_STD_110802_1, 140</file>
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+ <sequence>R.NLAENISR.V</sequence>
32
+ <mass>917.00</mass>
33
+ <deltamass>0.13</deltamass>
34
+ <charge>2</charge>
35
+ <peptide_probability>5.76E-10</peptide_probability>
36
+ <xcorr>2.420</xcorr>
37
+ <deltacn>0.255</deltacn>
38
+ <sp>628.7</sp>
39
+ <rsp>2</rsp>
40
+ <ions>12/14</ions>
41
+ <count>0</count>
42
+ <tic>4377</tic>
43
+ </peptide>
44
+ <peptide>
45
+ <file>7MIX_STD_110802_1, 143</file>
46
+ <sequence>R.IPELR.Q</sequence>
47
+ <mass>627.76</mass>
48
+ <deltamass>0.50</deltamass>
49
+ <charge>1</charge>
50
+ <peptide_probability>5.76E-10</peptide_probability>
51
+ <xcorr>1.722</xcorr>
52
+ <deltacn>0.000</deltacn>
53
+ <sp>306.9</sp>
54
+ <rsp>1</rsp>
55
+ <ions>7/8</ions>
56
+ <count>2</count>
57
+ <tic>3810</tic>
58
+ </peptide>
59
+ <peptide>
60
+ <file>7MIX_STD_110802_1, 155</file>
61
+ <sequence>R.IPELR.Q</sequence>
62
+ <mass>627.76</mass>
63
+ <deltamass>0.47</deltamass>
64
+ <charge>1</charge>
65
+ <peptide_probability>5.76E-10</peptide_probability>
66
+ <xcorr>1.803</xcorr>
67
+ <deltacn>0.000</deltacn>
68
+ <sp>270.9</sp>
69
+ <rsp>1</rsp>
70
+ <ions>7/8</ions>
71
+ <count>2</count>
72
+ <tic>3308</tic>
73
+ </peptide>
74
+ <peptide>
75
+ <file>7MIX_STD_110802_1, 167</file>
76
+ <sequence>R.NLAENISR.V</sequence>
77
+ <mass>917.00</mass>
78
+ <deltamass>0.45</deltamass>
79
+ <charge>1</charge>
80
+ <peptide_probability>5.76E-10</peptide_probability>
81
+ <xcorr>1.485</xcorr>
82
+ <deltacn>0.124</deltacn>
83
+ <sp>144.1</sp>
84
+ <rsp>1</rsp>
85
+ <ions>10/14</ions>
86
+ <count>0</count>
87
+ <tic>2592</tic>
88
+ </peptide>
89
+ <peptide>
90
+ <file>7MIX_STD_110802_1, 257</file>
91
+ <sequence>R.NLAENISR.V</sequence>
92
+ <mass>917.00</mass>
93
+ <deltamass>0.21</deltamass>
94
+ <charge>2</charge>
95
+ <peptide_probability>5.76E-10</peptide_probability>
96
+ <xcorr>2.122</xcorr>
97
+ <deltacn>0.250</deltacn>
98
+ <sp>446.5</sp>
99
+ <rsp>1</rsp>
100
+ <ions>11/14</ions>
101
+ <count>0</count>
102
+ <tic>3503</tic>
103
+ </peptide>
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+ <peptide>
105
+ <file>7MIX_STD_110802_1, 260</file>
106
+ <sequence>R.NLAENISR.V</sequence>
107
+ <mass>917.00</mass>
108
+ <deltamass>0.02</deltamass>
109
+ <charge>2</charge>
110
+ <peptide_probability>5.76E-10</peptide_probability>
111
+ <xcorr>2.457</xcorr>
112
+ <deltacn>0.286</deltacn>
113
+ <sp>584.1</sp>
114
+ <rsp>1</rsp>
115
+ <ions>12/14</ions>
116
+ <count>0</count>
117
+ <tic>3830</tic>
118
+ </peptide>
119
+ <peptide>
120
+ <file>7MIX_STD_110802_1, 281</file>
121
+ <sequence>R.NLAENISR.V</sequence>
122
+ <mass>917.00</mass>
123
+ <deltamass>0.48</deltamass>
124
+ <charge>1</charge>
125
+ <peptide_probability>5.76E-10</peptide_probability>
126
+ <xcorr>2.312</xcorr>
127
+ <deltacn>0.164</deltacn>
128
+ <sp>211.1</sp>
129
+ <rsp>1</rsp>
130
+ <ions>11/14</ions>
131
+ <count>0</count>
132
+ <tic>2792</tic>
133
+ </peptide>
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+ <peptide>
135
+ <file>7MIX_STD_110802_1, 629</file>
136
+ <sequence>R.YGNPWEK.A</sequence>
137
+ <mass>893.97</mass>
138
+ <deltamass>0.09</deltamass>
139
+ <charge>2</charge>
140
+ <peptide_probability>5.76E-10</peptide_probability>
141
+ <xcorr>2.288</xcorr>
142
+ <deltacn>0.352</deltacn>
143
+ <sp>688.1</sp>
144
+ <rsp>1</rsp>
145
+ <ions>11/12</ions>
146
+ <count>0</count>
147
+ <tic>4751</tic>
148
+ </peptide>
149
+ <peptide>
150
+ <file>7MIX_STD_110802_1, 632</file>
151
+ <sequence>R.YGNPWEK.A</sequence>
152
+ <mass>893.97</mass>
153
+ <deltamass>0.37</deltamass>
154
+ <charge>2</charge>
155
+ <peptide_probability>5.76E-10</peptide_probability>
156
+ <xcorr>2.224</xcorr>
157
+ <deltacn>0.346</deltacn>
158
+ <sp>336.3</sp>
159
+ <rsp>4</rsp>
160
+ <ions>8/12</ions>
161
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1622
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1623
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1638
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1639
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1653
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1654
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1668
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1669
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1670
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1671
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1679
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1681
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1933
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1934
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1945
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1948
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1963
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1975
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1978
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1988
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1989
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1990
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1991
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1992
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1993
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1994
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2017
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2018
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2020
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2021
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2023
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2024
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2025
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2026
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2030
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2032
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2035
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2039
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2040
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2041
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2053
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2054
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2055
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2064
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2065
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2066
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2067
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2068
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2069
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2070
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2071
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2082
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2085
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2086
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2087
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2098
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2099
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2101
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2102
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2103
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2110
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2111
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2112
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2113
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2114
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2115
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2116
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2117
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2118
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2128
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2130
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2132
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2143
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2144
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2147
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2162
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2526
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2527
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2528
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2529
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2530
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2531
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2532
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2533
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2538
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2539
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2540
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2541
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2542
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2543
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2544
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2545
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2546
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2547
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2548
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2553
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2555
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2556
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2557
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2558
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2559
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2560
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2561
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2562
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2568
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2570
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2571
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2575
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2576
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2577
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2578
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2579
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2583
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2590
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2601
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2604
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2621
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2622
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2623
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2624
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2628
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2646
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2649
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2650
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2967
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2968
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2969
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2970
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2982
+ <xcorr>2.080</xcorr>
2983
+ <deltacn>0.300</deltacn>
2984
+ <sp>403.7</sp>
2985
+ <rsp>1</rsp>
2986
+ <ions>12/22</ions>
2987
+ <count>1</count>
2988
+ <tic>5915</tic>
2989
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2990
+ <peptide>
2991
+ <file>7MIX_STD_110802_1, 521</file>
2992
+ <sequence>R.ALGTNPTNAEVK.K</sequence>
2993
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2994
+ <deltamass>0.23</deltamass>
2995
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2996
+ <peptide_probability>3.13E-6</peptide_probability>
2997
+ <xcorr>2.968</xcorr>
2998
+ <deltacn>0.347</deltacn>
2999
+ <sp>806.5</sp>
3000
+ <rsp>1</rsp>
3001
+ <ions>18/22</ions>
3002
+ <count>1</count>
3003
+ <tic>4981</tic>
3004
+ </peptide>
3005
+ <peptide>
3006
+ <file>7MIX_STD_110802_1, 744</file>
3007
+ <sequence>K.VLGNPSNEEMNAK.K</sequence>
3008
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3009
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3010
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3011
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3012
+ <xcorr>3.246</xcorr>
3013
+ <deltacn>0.520</deltacn>
3014
+ <sp>551.2</sp>
3015
+ <rsp>1</rsp>
3016
+ <ions>16/24</ions>
3017
+ <count>1</count>
3018
+ <tic>4406</tic>
3019
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3020
+ <peptide>
3021
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3022
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3023
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3024
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3025
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3026
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3027
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3028
+ <deltacn>0.470</deltacn>
3029
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3030
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3031
+ <ions>15/24</ions>
3032
+ <count>1</count>
3033
+ <tic>4407</tic>
3034
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3035
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3036
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3037
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3038
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3039
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3040
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3041
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3042
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3043
+ <deltacn>0.468</deltacn>
3044
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3045
+ <rsp>1</rsp>
3046
+ <ions>18/20</ions>
3047
+ <count>3</count>
3048
+ <tic>6711</tic>
3049
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3050
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3051
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3052
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3053
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3054
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3055
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3056
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3057
+ <xcorr>3.504</xcorr>
3058
+ <deltacn>0.327</deltacn>
3059
+ <sp>1392.3</sp>
3060
+ <rsp>1</rsp>
3061
+ <ions>17/20</ions>
3062
+ <count>3</count>
3063
+ <tic>8068</tic>
3064
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3065
+ <peptide>
3066
+ <file>7MIX_STD_110802_1, 3003</file>
3067
+ <sequence>K.KVLGNPSNEEMNAKK.I</sequence>
3068
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3069
+ <deltamass>0.69</deltamass>
3070
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3071
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3072
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3073
+ <deltacn>0.147</deltacn>
3074
+ <sp>71.1</sp>
3075
+ <rsp>66</rsp>
3076
+ <ions>6/28</ions>
3077
+ <count>1</count>
3078
+ <tic>5897</tic>
3079
+ </peptide>
3080
+ </protein>
3081
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3082
+ <reference>gi|17986273|ref|NP_524144.1| fast skeletal myosin alkali light chain 1 isoform 1f; A1 catalytic; A2</reference>
3083
+ <protein_probability>3.13E-6</protein_probability>
3084
+ <consensus_score>10.2</consensus_score>
3085
+ <Sf>0.00</Sf>
3086
+ <unified_score>0</unified_score>
3087
+ <coverage>0.0</coverage>
3088
+ <pI>0.0</pI>
3089
+ <weight>21145.0</weight>
3090
+ <accession>17986273</accession>
3091
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3092
+ <file>7MIX_STD_110802_1, 2573</file>
3093
+ <sequence>K.ITLSQVGDVLR.A</sequence>
3094
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3095
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3096
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3097
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3098
+ <xcorr>3.751</xcorr>
3099
+ <deltacn>0.468</deltacn>
3100
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3101
+ <rsp>1</rsp>
3102
+ <ions>18/20</ions>
3103
+ <count>3</count>
3104
+ <tic>0</tic>
3105
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3106
+ <peptide>
3107
+ <file>7MIX_STD_110802_1, 2582</file>
3108
+ <sequence>K.ITLSQVGDVLR.A</sequence>
3109
+ <mass>1201.40</mass>
3110
+ <deltamass>1.03</deltamass>
3111
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3112
+ <peptide_probability>3.13E-6</peptide_probability>
3113
+ <xcorr>3.504</xcorr>
3114
+ <deltacn>0.327</deltacn>
3115
+ <sp>1392.3</sp>
3116
+ <rsp>1</rsp>
3117
+ <ions>17/20</ions>
3118
+ <count>3</count>
3119
+ <tic>0</tic>
3120
+ </peptide>
3121
+ </protein>
3122
+ <protein>
3123
+ <reference>gi|17986275|ref|NP_524146.1| fast skeletal myosin alkali light chain 1 isoform 3f; A1 catalytic; A2</reference>
3124
+ <protein_probability>3.13E-6</protein_probability>
3125
+ <consensus_score>10.2</consensus_score>
3126
+ <Sf>0.00</Sf>
3127
+ <unified_score>0</unified_score>
3128
+ <coverage>0.0</coverage>
3129
+ <pI>0.0</pI>
3130
+ <weight>16683.7</weight>
3131
+ <accession>17986275</accession>
3132
+ <peptide>
3133
+ <file>7MIX_STD_110802_1, 2573</file>
3134
+ <sequence>K.ITLSQVGDVLR.A</sequence>
3135
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3136
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3137
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3138
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3139
+ <xcorr>3.751</xcorr>
3140
+ <deltacn>0.468</deltacn>
3141
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3142
+ <rsp>1</rsp>
3143
+ <ions>18/20</ions>
3144
+ <count>3</count>
3145
+ <tic>0</tic>
3146
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3147
+ <peptide>
3148
+ <file>7MIX_STD_110802_1, 2582</file>
3149
+ <sequence>K.ITLSQVGDVLR.A</sequence>
3150
+ <mass>1201.40</mass>
3151
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3152
+ <charge>2</charge>
3153
+ <peptide_probability>3.13E-6</peptide_probability>
3154
+ <xcorr>3.504</xcorr>
3155
+ <deltacn>0.327</deltacn>
3156
+ <sp>1392.3</sp>
3157
+ <rsp>1</rsp>
3158
+ <ions>17/20</ions>
3159
+ <count>3</count>
3160
+ <tic>0</tic>
3161
+ </peptide>
3162
+ </protein>
3163
+ <protein>
3164
+ <reference>gi|127129|sp|P05977|MLE1_MOUSE Myosin light chain 1, skeletal muscle isoform (MLC1F) (A1 catalytic)</reference>
3165
+ <protein_probability>3.98E-6</protein_probability>
3166
+ <consensus_score>38.2</consensus_score>
3167
+ <Sf>0.00</Sf>
3168
+ <unified_score>0</unified_score>
3169
+ <coverage>0.0</coverage>
3170
+ <pI>0.0</pI>
3171
+ <weight>20594.4</weight>
3172
+ <accession>127129</accession>
3173
+ <peptide>
3174
+ <file>7MIX_STD_110802_1, 518</file>
3175
+ <sequence>R.ALGTNPTNAEVK.K</sequence>
3176
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3177
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3178
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3179
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3180
+ <xcorr>2.080</xcorr>
3181
+ <deltacn>0.300</deltacn>
3182
+ <sp>403.7</sp>
3183
+ <rsp>1</rsp>
3184
+ <ions>12/22</ions>
3185
+ <count>1</count>
3186
+ <tic>0</tic>
3187
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3188
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3189
+ <file>7MIX_STD_110802_1, 521</file>
3190
+ <sequence>R.ALGTNPTNAEVK.K</sequence>
3191
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3192
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3193
+ <charge>2</charge>
3194
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3195
+ <xcorr>2.968</xcorr>
3196
+ <deltacn>0.347</deltacn>
3197
+ <sp>806.5</sp>
3198
+ <rsp>1</rsp>
3199
+ <ions>18/22</ions>
3200
+ <count>1</count>
3201
+ <tic>0</tic>
3202
+ </peptide>
3203
+ <peptide>
3204
+ <file>7MIX_STD_110802_1, 744</file>
3205
+ <sequence>K.VLGNPSNEEMNAK.K</sequence>
3206
+ <mass>1403.54</mass>
3207
+ <deltamass>0.09</deltamass>
3208
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3209
+ <peptide_probability>3.98E-6</peptide_probability>
3210
+ <xcorr>3.246</xcorr>
3211
+ <deltacn>0.520</deltacn>
3212
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3213
+ <rsp>1</rsp>
3214
+ <ions>16/24</ions>
3215
+ <count>1</count>
3216
+ <tic>0</tic>
3217
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3218
+ <peptide>
3219
+ <file>7MIX_STD_110802_1, 747</file>
3220
+ <sequence>K.VLGNPSNEEMNAK.K</sequence>
3221
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3222
+ <deltamass>0.38</deltamass>
3223
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3224
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3225
+ <xcorr>3.300</xcorr>
3226
+ <deltacn>0.470</deltacn>
3227
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3228
+ <rsp>1</rsp>
3229
+ <ions>15/24</ions>
3230
+ <count>1</count>
3231
+ <tic>0</tic>
3232
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3233
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3234
+ <file>7MIX_STD_110802_1, 2573</file>
3235
+ <sequence>K.ITLSQVGDVLR.A</sequence>
3236
+ <mass>1201.40</mass>
3237
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3238
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3239
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3240
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3241
+ <deltacn>0.468</deltacn>
3242
+ <sp>1533.5</sp>
3243
+ <rsp>1</rsp>
3244
+ <ions>18/20</ions>
3245
+ <count>3</count>
3246
+ <tic>0</tic>
3247
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3248
+ <peptide>
3249
+ <file>7MIX_STD_110802_1, 2582</file>
3250
+ <sequence>K.ITLSQVGDVLR.A</sequence>
3251
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3252
+ <deltamass>1.03</deltamass>
3253
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3254
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3255
+ <xcorr>3.504</xcorr>
3256
+ <deltacn>0.327</deltacn>
3257
+ <sp>1392.3</sp>
3258
+ <rsp>1</rsp>
3259
+ <ions>17/20</ions>
3260
+ <count>3</count>
3261
+ <tic>0</tic>
3262
+ </peptide>
3263
+ <peptide>
3264
+ <file>7MIX_STD_110802_1, 3003</file>
3265
+ <sequence>K.KVLGNPSNEEMNAKK.I</sequence>
3266
+ <mass>1659.89</mass>
3267
+ <deltamass>0.69</deltamass>
3268
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3269
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3270
+ <xcorr>0.826</xcorr>
3271
+ <deltacn>0.147</deltacn>
3272
+ <sp>71.1</sp>
3273
+ <rsp>66</rsp>
3274
+ <ions>6/28</ions>
3275
+ <count>1</count>
3276
+ <tic>0</tic>
3277
+ </peptide>
3278
+ <peptide>
3279
+ <file>7MIX_STD_110802_1, 2003</file>
3280
+ <sequence>K.IDLSAIKIEFSK.E</sequence>
3281
+ <mass>1364.61</mass>
3282
+ <deltamass>1.18</deltamass>
3283
+ <charge>2</charge>
3284
+ <peptide_probability>3.98E-6</peptide_probability>
3285
+ <xcorr>1.146</xcorr>
3286
+ <deltacn>1.100</deltacn>
3287
+ <sp>281.6</sp>
3288
+ <rsp>9</rsp>
3289
+ <ions>9/22</ions>
3290
+ <count>1</count>
3291
+ <tic>9511</tic>
3292
+ </peptide>
3293
+ </protein>
3294
+ <protein>
3295
+ <reference>INV_gi|30148742|ref|XP_292953.2| similar to cytochrome c oxidase subunit I [Homo sapiens]</reference>
3296
+ <protein_probability>1.08E-5</protein_probability>
3297
+ <consensus_score>10.1</consensus_score>
3298
+ <Sf>0.00</Sf>
3299
+ <unified_score>0</unified_score>
3300
+ <coverage>0.0</coverage>
3301
+ <pI>0.0</pI>
3302
+ <weight>30980.8</weight>
3303
+ <accession>0</accession>
3304
+ <peptide>
3305
+ <file>7MIX_STD_110802_1, 4232</file>
3306
+ <sequence>K.GCQQNKAHNRPERIWGSETTQQLGGTHQK.T</sequence>
3307
+ <mass>3291.57</mass>
3308
+ <deltamass>0.38</deltamass>
3309
+ <charge>3</charge>
3310
+ <peptide_probability>1.08E-5</peptide_probability>
3311
+ <xcorr>1.227</xcorr>
3312
+ <deltacn>0.068</deltacn>
3313
+ <sp>265.6</sp>
3314
+ <rsp>2</rsp>
3315
+ <ions>18/112</ions>
3316
+ <count>0</count>
3317
+ <tic>9717</tic>
3318
+ </peptide>
3319
+ </protein>
3320
+ <protein>
3321
+ <reference>gi|29739414|ref|XP_294015.1| similar to Glyceraldehyde 3-phosphate dehydrogenase, liver (GAPDH) [Ho</reference>
3322
+ <protein_probability>1.41E-5</protein_probability>
3323
+ <consensus_score>18.2</consensus_score>
3324
+ <Sf>0.00</Sf>
3325
+ <unified_score>0</unified_score>
3326
+ <coverage>0.0</coverage>
3327
+ <pI>0.0</pI>
3328
+ <weight>26916.7</weight>
3329
+ <accession>29739414</accession>
3330
+ <peptide>
3331
+ <file>7MIX_STD_110802_1, 2628 - 2630</file>
3332
+ <sequence>K.LISWYDNEFGYSNR.V</sequence>
3333
+ <mass>1764.87</mass>
3334
+ <deltamass>0.77</deltamass>
3335
+ <charge>2</charge>
3336
+ <peptide_probability>1.41E-5</peptide_probability>
3337
+ <xcorr>3.978</xcorr>
3338
+ <deltacn>0.490</deltacn>
3339
+ <sp>1722.1</sp>
3340
+ <rsp>1</rsp>
3341
+ <ions>19/26</ions>
3342
+ <count>0</count>
3343
+ <tic>9970</tic>
3344
+ </peptide>
3345
+ <peptide>
3346
+ <file>7MIX_STD_110802_1, 1838</file>
3347
+ <sequence>K.YYDIKKMMK.Q</sequence>
3348
+ <mass>1220.53</mass>
3349
+ <deltamass>1.31</deltamass>
3350
+ <charge>1</charge>
3351
+ <peptide_probability>1.41E-5</peptide_probability>
3352
+ <xcorr>1.142</xcorr>
3353
+ <deltacn>0.298</deltacn>
3354
+ <sp>239.8</sp>
3355
+ <rsp>4</rsp>
3356
+ <ions>9/16</ions>
3357
+ <count>0</count>
3358
+ <tic>6308</tic>
3359
+ </peptide>
3360
+ </protein>
3361
+ <protein>
3362
+ <reference>gi|1786543|gb|AAC73450.1| 3-(3-hydroxyphenyl)propionate hydroxylase [Escherichia coli K12]</reference>
3363
+ <protein_probability>1.54E-5</protein_probability>
3364
+ <consensus_score>20.1</consensus_score>
3365
+ <Sf>0.00</Sf>
3366
+ <unified_score>0</unified_score>
3367
+ <coverage>0.0</coverage>
3368
+ <pI>0.0</pI>
3369
+ <weight>62185.3</weight>
3370
+ <accession>1786543</accession>
3371
+ <peptide>
3372
+ <file>7MIX_STD_110802_1, 902</file>
3373
+ <sequence>K.VLPNPDNVELIR.Q</sequence>
3374
+ <mass>1379.59</mass>
3375
+ <deltamass>1.22</deltamass>
3376
+ <charge>3</charge>
3377
+ <peptide_probability>1.54E-5</peptide_probability>
3378
+ <xcorr>1.742</xcorr>
3379
+ <deltacn>0.023</deltacn>
3380
+ <sp>408.4</sp>
3381
+ <rsp>3</rsp>
3382
+ <ions>16/44</ions>
3383
+ <count>0</count>
3384
+ <tic>4697</tic>
3385
+ </peptide>
3386
+ <peptide>
3387
+ <file>7MIX_STD_110802_1, 4428</file>
3388
+ <sequence>R.ALGTR.F</sequence>
3389
+ <mass>517.60</mass>
3390
+ <deltamass>1.33</deltamass>
3391
+ <charge>1</charge>
3392
+ <peptide_probability>1.54E-5</peptide_probability>
3393
+ <xcorr>0.606</xcorr>
3394
+ <deltacn>0.095</deltacn>
3395
+ <sp>30.7</sp>
3396
+ <rsp>20</rsp>
3397
+ <ions>4/8</ions>
3398
+ <count>3</count>
3399
+ <tic>2762</tic>
3400
+ </peptide>
3401
+ </protein>
3402
+ <protein>
3403
+ <reference>gi|4502027|ref|NP_000468.1| albumin precursor; PRO0883 protein [Homo sapiens]</reference>
3404
+ <protein_probability>1.67E-5</protein_probability>
3405
+ <consensus_score>74.2</consensus_score>
3406
+ <Sf>0.00</Sf>
3407
+ <unified_score>0</unified_score>
3408
+ <coverage>0.0</coverage>
3409
+ <pI>0.0</pI>
3410
+ <weight>69366.4</weight>
3411
+ <accession>4502027</accession>
3412
+ <peptide>
3413
+ <file>7MIX_STD_110802_1, 333 - 335</file>
3414
+ <sequence>K.LVTDLTK.V</sequence>
3415
+ <mass>789.94</mass>
3416
+ <deltamass>0.54</deltamass>
3417
+ <charge>1</charge>
3418
+ <peptide_probability>1.67E-5</peptide_probability>
3419
+ <xcorr>1.806</xcorr>
3420
+ <deltacn>0.079</deltacn>
3421
+ <sp>319.6</sp>
3422
+ <rsp>1</rsp>
3423
+ <ions>8/12</ions>
3424
+ <count>1</count>
3425
+ <tic>0</tic>
3426
+ </peptide>
3427
+ <peptide>
3428
+ <file>7MIX_STD_110802_1, 1851</file>
3429
+ <sequence>R.KVPQVSTPTLVEVSR.S</sequence>
3430
+ <mass>1640.91</mass>
3431
+ <deltamass>0.07</deltamass>
3432
+ <charge>3</charge>
3433
+ <peptide_probability>1.67E-5</peptide_probability>
3434
+ <xcorr>3.093</xcorr>
3435
+ <deltacn>0.362</deltacn>
3436
+ <sp>957.8</sp>
3437
+ <rsp>1</rsp>
3438
+ <ions>24/56</ions>
3439
+ <count>1</count>
3440
+ <tic>0</tic>
3441
+ </peptide>
3442
+ <peptide>
3443
+ <file>7MIX_STD_110802_1, 1854</file>
3444
+ <sequence>R.KVPQVSTPTLVEVSR.S</sequence>
3445
+ <mass>1640.91</mass>
3446
+ <deltamass>0.14</deltamass>
3447
+ <charge>3</charge>
3448
+ <peptide_probability>1.67E-5</peptide_probability>
3449
+ <xcorr>3.801</xcorr>
3450
+ <deltacn>0.409</deltacn>
3451
+ <sp>1377.0</sp>
3452
+ <rsp>1</rsp>
3453
+ <ions>28/56</ions>
3454
+ <count>1</count>
3455
+ <tic>0</tic>
3456
+ </peptide>
3457
+ <peptide>
3458
+ <file>7MIX_STD_110802_1, 1899</file>
3459
+ <sequence>K.SLHTLFGDK.L</sequence>
3460
+ <mass>1018.15</mass>
3461
+ <deltamass>0.77</deltamass>
3462
+ <charge>2</charge>
3463
+ <peptide_probability>1.67E-5</peptide_probability>
3464
+ <xcorr>1.768</xcorr>
3465
+ <deltacn>0.203</deltacn>
3466
+ <sp>781.3</sp>
3467
+ <rsp>1</rsp>
3468
+ <ions>12/16</ions>
3469
+ <count>0</count>
3470
+ <tic>7797</tic>
3471
+ </peptide>
3472
+ <peptide>
3473
+ <file>7MIX_STD_110802_1, 3087</file>
3474
+ <sequence>K.VFDEFKPLVEEPQNLIK.Q</sequence>
3475
+ <mass>2046.35</mass>
3476
+ <deltamass>0.53</deltamass>
3477
+ <charge>3</charge>
3478
+ <peptide_probability>1.67E-5</peptide_probability>
3479
+ <xcorr>4.553</xcorr>
3480
+ <deltacn>0.434</deltacn>
3481
+ <sp>1646.1</sp>
3482
+ <rsp>1</rsp>
3483
+ <ions>35/64</ions>
3484
+ <count>0</count>
3485
+ <tic>5126</tic>
3486
+ </peptide>
3487
+ <peptide>
3488
+ <file>7MIX_STD_110802_1, 3501</file>
3489
+ <sequence>R.RHPYFYAPELLFFAK.R</sequence>
3490
+ <mass>1900.21</mass>
3491
+ <deltamass>1.31</deltamass>
3492
+ <charge>3</charge>
3493
+ <peptide_probability>1.67E-5</peptide_probability>
3494
+ <xcorr>3.233</xcorr>
3495
+ <deltacn>0.394</deltacn>
3496
+ <sp>1249.4</sp>
3497
+ <rsp>1</rsp>
3498
+ <ions>28/56</ions>
3499
+ <count>0</count>
3500
+ <tic>6564</tic>
3501
+ </peptide>
3502
+ <peptide>
3503
+ <file>7MIX_STD_110802_1, 3782</file>
3504
+ <sequence>K.DVFLGMFLYEYAR.R</sequence>
3505
+ <mass>1624.88</mass>
3506
+ <deltamass>0.89</deltamass>
3507
+ <charge>2</charge>
3508
+ <peptide_probability>1.67E-5</peptide_probability>
3509
+ <xcorr>3.012</xcorr>
3510
+ <deltacn>0.433</deltacn>
3511
+ <sp>2065.3</sp>
3512
+ <rsp>1</rsp>
3513
+ <ions>20/24</ions>
3514
+ <count>0</count>
3515
+ <tic>7987</tic>
3516
+ </peptide>
3517
+ <peptide>
3518
+ <file>7MIX_STD_110802_1, 3785</file>
3519
+ <sequence>K.DVFLGMFLYEYAR.R</sequence>
3520
+ <mass>1624.88</mass>
3521
+ <deltamass>0.81</deltamass>
3522
+ <charge>2</charge>
3523
+ <peptide_probability>1.67E-5</peptide_probability>
3524
+ <xcorr>4.538</xcorr>
3525
+ <deltacn>0.555</deltacn>
3526
+ <sp>1589.3</sp>
3527
+ <rsp>1</rsp>
3528
+ <ions>19/24</ions>
3529
+ <count>0</count>
3530
+ <tic>7312</tic>
3531
+ </peptide>
3532
+ <peptide>
3533
+ <file>7MIX_STD_110802_1, 4826</file>
3534
+ <sequence>K.VHTECCHGDLLECADDR.A</sequence>
3535
+ <mass>1917.09</mass>
3536
+ <deltamass>1.37</deltamass>
3537
+ <charge>2</charge>
3538
+ <peptide_probability>1.67E-5</peptide_probability>
3539
+ <xcorr>0.695</xcorr>
3540
+ <deltacn>0.130</deltacn>
3541
+ <sp>88.1</sp>
3542
+ <rsp>24</rsp>
3543
+ <ions>6/32</ions>
3544
+ <count>0</count>
3545
+ <tic>8544</tic>
3546
+ </peptide>
3547
+ <peptide>
3548
+ <file>7MIX_STD_110802_1, 3567</file>
3549
+ <sequence>K.LVNEVTEFAKTCVADESAENCDK.S</sequence>
3550
+ <mass>2516.74</mass>
3551
+ <deltamass>1.02</deltamass>
3552
+ <charge>3</charge>
3553
+ <peptide_probability>1.67E-5</peptide_probability>
3554
+ <xcorr>1.076</xcorr>
3555
+ <deltacn>0.154</deltacn>
3556
+ <sp>253.7</sp>
3557
+ <rsp>45</rsp>
3558
+ <ions>18/88</ions>
3559
+ <count>0</count>
3560
+ <tic>10704</tic>
3561
+ </peptide>
3562
+ <peptide>
3563
+ <file>7MIX_STD_110802_1, 921</file>
3564
+ <sequence>K.EQLKAVMDDFAAFVEK.C</sequence>
3565
+ <mass>1842.11</mass>
3566
+ <deltamass>0.61</deltamass>
3567
+ <charge>3</charge>
3568
+ <peptide_probability>1.67E-5</peptide_probability>
3569
+ <xcorr>1.243</xcorr>
3570
+ <deltacn>1.100</deltacn>
3571
+ <sp>364.1</sp>
3572
+ <rsp>10</rsp>
3573
+ <ions>17/60</ions>
3574
+ <count>0</count>
3575
+ <tic>9714</tic>
3576
+ </peptide>
3577
+ </protein>
3578
+ <protein>
3579
+ <reference>gi|1790518|gb|AAD13464.1| putative enzyme [Escherichia coli K12]</reference>
3580
+ <protein_probability>4.81E-5</protein_probability>
3581
+ <consensus_score>10.1</consensus_score>
3582
+ <Sf>0.00</Sf>
3583
+ <unified_score>0</unified_score>
3584
+ <coverage>0.0</coverage>
3585
+ <pI>0.0</pI>
3586
+ <weight>70869.1</weight>
3587
+ <accession>1790518</accession>
3588
+ <peptide>
3589
+ <file>7MIX_STD_110802_1, 4434</file>
3590
+ <sequence>K.WSYGEPLIRLIIAGPILMGCMFLMR.T</sequence>
3591
+ <mass>2882.61</mass>
3592
+ <deltamass>0.06</deltamass>
3593
+ <charge>2</charge>
3594
+ <peptide_probability>4.81E-5</peptide_probability>
3595
+ <xcorr>1.054</xcorr>
3596
+ <deltacn>0.315</deltacn>
3597
+ <sp>145.4</sp>
3598
+ <rsp>1</rsp>
3599
+ <ions>10/48</ions>
3600
+ <count>0</count>
3601
+ <tic>4570</tic>
3602
+ </peptide>
3603
+ </protein>
3604
+ <protein>
3605
+ <reference>INV_gi|14729827|ref|XP_039231.1| hypothetical protein XP_039231 [Homo sapiens]</reference>
3606
+ <protein_probability>7.50E-5</protein_probability>
3607
+ <consensus_score>8.0</consensus_score>
3608
+ <Sf>0.00</Sf>
3609
+ <unified_score>0</unified_score>
3610
+ <coverage>0.0</coverage>
3611
+ <pI>0.0</pI>
3612
+ <weight>13401.6</weight>
3613
+ <accession>0</accession>
3614
+ <peptide>
3615
+ <file>7MIX_STD_110802_1, 5907</file>
3616
+ <sequence>K.FYNLKCQSTLCYIR.S</sequence>
3617
+ <mass>1753.08</mass>
3618
+ <deltamass>0.47</deltamass>
3619
+ <charge>2</charge>
3620
+ <peptide_probability>7.50E-5</peptide_probability>
3621
+ <xcorr>0.796</xcorr>
3622
+ <deltacn>0.153</deltacn>
3623
+ <sp>149.9</sp>
3624
+ <rsp>3</rsp>
3625
+ <ions>7/26</ions>
3626
+ <count>0</count>
3627
+ <tic>6682</tic>
3628
+ </peptide>
3629
+ </protein>
3630
+ <protein>
3631
+ <reference>gi|20539418|ref|XP_168226.1| hypothetical protein XP_168226 [Homo sapiens]</reference>
3632
+ <protein_probability>1.17E-4</protein_probability>
3633
+ <consensus_score>10.0</consensus_score>
3634
+ <Sf>0.00</Sf>
3635
+ <unified_score>0</unified_score>
3636
+ <coverage>0.0</coverage>
3637
+ <pI>0.0</pI>
3638
+ <weight>12547.9</weight>
3639
+ <accession>20539418</accession>
3640
+ <peptide>
3641
+ <file>7MIX_STD_110802_1, 3603</file>
3642
+ <sequence>K.YSCVDLTSNWRK.C</sequence>
3643
+ <mass>1472.65</mass>
3644
+ <deltamass>0.84</deltamass>
3645
+ <charge>2</charge>
3646
+ <peptide_probability>1.17E-4</peptide_probability>
3647
+ <xcorr>0.986</xcorr>
3648
+ <deltacn>0.079</deltacn>
3649
+ <sp>220.7</sp>
3650
+ <rsp>3</rsp>
3651
+ <ions>8/22</ions>
3652
+ <count>0</count>
3653
+ <tic>10421</tic>
3654
+ </peptide>
3655
+ </protein>
3656
+ <protein>
3657
+ <reference>INV_gi|10190730|ref|NP_065733.1| Cyt19 protein; likely ortholog of rat methyltransferase Cyt19; S-a</reference>
3658
+ <protein_probability>1.36E-4</protein_probability>
3659
+ <consensus_score>14.1</consensus_score>
3660
+ <Sf>0.00</Sf>
3661
+ <unified_score>0</unified_score>
3662
+ <coverage>0.0</coverage>
3663
+ <pI>0.0</pI>
3664
+ <weight>37968.2</weight>
3665
+ <accession>0</accession>
3666
+ <peptide>
3667
+ <file>7MIX_STD_110802_1, 3381</file>
3668
+ <sequence>K.LVRYAEQLVQQKDPVLNIVCNSVVIDHSENK.I</sequence>
3669
+ <mass>3553.05</mass>
3670
+ <deltamass>0.41</deltamass>
3671
+ <charge>3</charge>
3672
+ <peptide_probability>1.36E-4</peptide_probability>
3673
+ <xcorr>2.024</xcorr>
3674
+ <deltacn>0.040</deltacn>
3675
+ <sp>267.2</sp>
3676
+ <rsp>2</rsp>
3677
+ <ions>19/120</ions>
3678
+ <count>0</count>
3679
+ <tic>10788</tic>
3680
+ </peptide>
3681
+ <peptide>
3682
+ <file>7MIX_STD_110802_1, 194</file>
3683
+ <sequence>K.EGIPRILFDQAFRSNK.L</sequence>
3684
+ <mass>1892.15</mass>
3685
+ <deltamass>0.87</deltamass>
3686
+ <charge>3</charge>
3687
+ <peptide_probability>1.36E-4</peptide_probability>
3688
+ <xcorr>0.888</xcorr>
3689
+ <deltacn>1.100</deltacn>
3690
+ <sp>77.8</sp>
3691
+ <rsp>204</rsp>
3692
+ <ions>14/60</ions>
3693
+ <count>0</count>
3694
+ <tic>3472</tic>
3695
+ </peptide>
3696
+ <peptide>
3697
+ <file>7MIX_STD_110802_1, 3674</file>
3698
+ <sequence>R.KLVQGYYTQVDKQIEADR.L</sequence>
3699
+ <mass>2155.40</mass>
3700
+ <deltamass>0.25</deltamass>
3701
+ <charge>3</charge>
3702
+ <peptide_probability>1.36E-4</peptide_probability>
3703
+ <xcorr>1.128</xcorr>
3704
+ <deltacn>1.100</deltacn>
3705
+ <sp>212.3</sp>
3706
+ <rsp>172</rsp>
3707
+ <ions>14/68</ions>
3708
+ <count>0</count>
3709
+ <tic>11021</tic>
3710
+ </peptide>
3711
+ </protein>
3712
+ <protein>
3713
+ <reference>INV_gi|30149386|ref|XP_089243.6| similar to hypothetical protein FLJ90022 [Homo sapiens]</reference>
3714
+ <protein_probability>1.85E-4</protein_probability>
3715
+ <consensus_score>18.1</consensus_score>
3716
+ <Sf>0.00</Sf>
3717
+ <unified_score>0</unified_score>
3718
+ <coverage>0.0</coverage>
3719
+ <pI>0.0</pI>
3720
+ <weight>38777.6</weight>
3721
+ <accession>0</accession>
3722
+ <peptide>
3723
+ <file>7MIX_STD_110802_1, 5277</file>
3724
+ <sequence>R.RLPARPVSAAAGGARLHQQR.V</sequence>
3725
+ <mass>2113.42</mass>
3726
+ <deltamass>1.39</deltamass>
3727
+ <charge>3</charge>
3728
+ <peptide_probability>1.85E-4</peptide_probability>
3729
+ <xcorr>0.958</xcorr>
3730
+ <deltacn>0.170</deltacn>
3731
+ <sp>65.8</sp>
3732
+ <rsp>3</rsp>
3733
+ <ions>10/76</ions>
3734
+ <count>0</count>
3735
+ <tic>2975</tic>
3736
+ </peptide>
3737
+ <peptide>
3738
+ <file>7MIX_STD_110802_1, 1964</file>
3739
+ <sequence>R.RLPARPVSAAAGGAR.L</sequence>
3740
+ <mass>1450.67</mass>
3741
+ <deltamass>0.63</deltamass>
3742
+ <charge>2</charge>
3743
+ <peptide_probability>1.85E-4</peptide_probability>
3744
+ <xcorr>1.221</xcorr>
3745
+ <deltacn>0.187</deltacn>
3746
+ <sp>259.0</sp>
3747
+ <rsp>1</rsp>
3748
+ <ions>12/28</ions>
3749
+ <count>0</count>
3750
+ <tic>7803</tic>
3751
+ </peptide>
3752
+ </protein>
3753
+ </sequestresults>