minimap2 0.2.25.1 → 0.2.25.2

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Files changed (100) hide show
  1. checksums.yaml +4 -4
  2. data/ext/Rakefile +2 -2
  3. data/lib/minimap2/version.rb +1 -1
  4. metadata +1 -97
  5. data/ext/minimap2/lib/simde/CONTRIBUTING.md +0 -114
  6. data/ext/minimap2/lib/simde/COPYING +0 -20
  7. data/ext/minimap2/lib/simde/README.md +0 -333
  8. data/ext/minimap2/lib/simde/amalgamate.py +0 -58
  9. data/ext/minimap2/lib/simde/meson.build +0 -33
  10. data/ext/minimap2/lib/simde/netlify.toml +0 -20
  11. data/ext/minimap2/lib/simde/simde/arm/neon/float32x2.h +0 -140
  12. data/ext/minimap2/lib/simde/simde/arm/neon/float32x4.h +0 -137
  13. data/ext/minimap2/lib/simde/simde/arm/neon/float64x1.h +0 -142
  14. data/ext/minimap2/lib/simde/simde/arm/neon/float64x2.h +0 -145
  15. data/ext/minimap2/lib/simde/simde/arm/neon/int16x4.h +0 -140
  16. data/ext/minimap2/lib/simde/simde/arm/neon/int16x8.h +0 -145
  17. data/ext/minimap2/lib/simde/simde/arm/neon/int32x2.h +0 -140
  18. data/ext/minimap2/lib/simde/simde/arm/neon/int32x4.h +0 -143
  19. data/ext/minimap2/lib/simde/simde/arm/neon/int64x1.h +0 -137
  20. data/ext/minimap2/lib/simde/simde/arm/neon/int64x2.h +0 -141
  21. data/ext/minimap2/lib/simde/simde/arm/neon/int8x16.h +0 -147
  22. data/ext/minimap2/lib/simde/simde/arm/neon/int8x8.h +0 -141
  23. data/ext/minimap2/lib/simde/simde/arm/neon/uint16x4.h +0 -134
  24. data/ext/minimap2/lib/simde/simde/arm/neon/uint16x8.h +0 -138
  25. data/ext/minimap2/lib/simde/simde/arm/neon/uint32x2.h +0 -134
  26. data/ext/minimap2/lib/simde/simde/arm/neon/uint32x4.h +0 -137
  27. data/ext/minimap2/lib/simde/simde/arm/neon/uint64x1.h +0 -131
  28. data/ext/minimap2/lib/simde/simde/arm/neon/uint64x2.h +0 -135
  29. data/ext/minimap2/lib/simde/simde/arm/neon/uint8x16.h +0 -141
  30. data/ext/minimap2/lib/simde/simde/arm/neon/uint8x8.h +0 -135
  31. data/ext/minimap2/lib/simde/simde/arm/neon.h +0 -97
  32. data/ext/minimap2/lib/simde/simde/check.h +0 -267
  33. data/ext/minimap2/lib/simde/simde/debug-trap.h +0 -83
  34. data/ext/minimap2/lib/simde/simde/hedley.h +0 -1899
  35. data/ext/minimap2/lib/simde/simde/simde-arch.h +0 -445
  36. data/ext/minimap2/lib/simde/simde/simde-common.h +0 -697
  37. data/ext/minimap2/lib/simde/simde/x86/avx.h +0 -5385
  38. data/ext/minimap2/lib/simde/simde/x86/avx2.h +0 -2402
  39. data/ext/minimap2/lib/simde/simde/x86/avx512bw.h +0 -391
  40. data/ext/minimap2/lib/simde/simde/x86/avx512f.h +0 -3389
  41. data/ext/minimap2/lib/simde/simde/x86/avx512vl.h +0 -112
  42. data/ext/minimap2/lib/simde/simde/x86/fma.h +0 -659
  43. data/ext/minimap2/lib/simde/simde/x86/mmx.h +0 -2210
  44. data/ext/minimap2/lib/simde/simde/x86/sse.h +0 -3696
  45. data/ext/minimap2/lib/simde/simde/x86/sse2.h +0 -5991
  46. data/ext/minimap2/lib/simde/simde/x86/sse3.h +0 -343
  47. data/ext/minimap2/lib/simde/simde/x86/sse4.1.h +0 -1783
  48. data/ext/minimap2/lib/simde/simde/x86/sse4.2.h +0 -105
  49. data/ext/minimap2/lib/simde/simde/x86/ssse3.h +0 -1053
  50. data/ext/minimap2/lib/simde/simde/x86/svml.h +0 -543
  51. data/ext/minimap2/lib/simde/test/CMakeLists.txt +0 -166
  52. data/ext/minimap2/lib/simde/test/arm/meson.build +0 -4
  53. data/ext/minimap2/lib/simde/test/arm/neon/meson.build +0 -23
  54. data/ext/minimap2/lib/simde/test/arm/neon/skel.c +0 -871
  55. data/ext/minimap2/lib/simde/test/arm/neon/test-neon-internal.h +0 -134
  56. data/ext/minimap2/lib/simde/test/arm/neon/test-neon.c +0 -39
  57. data/ext/minimap2/lib/simde/test/arm/neon/test-neon.h +0 -10
  58. data/ext/minimap2/lib/simde/test/arm/neon/vadd.c +0 -1260
  59. data/ext/minimap2/lib/simde/test/arm/neon/vdup_n.c +0 -873
  60. data/ext/minimap2/lib/simde/test/arm/neon/vmul.c +0 -1084
  61. data/ext/minimap2/lib/simde/test/arm/neon/vsub.c +0 -1260
  62. data/ext/minimap2/lib/simde/test/arm/test-arm-internal.h +0 -18
  63. data/ext/minimap2/lib/simde/test/arm/test-arm.c +0 -20
  64. data/ext/minimap2/lib/simde/test/arm/test-arm.h +0 -8
  65. data/ext/minimap2/lib/simde/test/cmake/AddCompilerFlags.cmake +0 -171
  66. data/ext/minimap2/lib/simde/test/cmake/ExtraWarningFlags.cmake +0 -68
  67. data/ext/minimap2/lib/simde/test/meson.build +0 -64
  68. data/ext/minimap2/lib/simde/test/munit/COPYING +0 -21
  69. data/ext/minimap2/lib/simde/test/munit/Makefile +0 -55
  70. data/ext/minimap2/lib/simde/test/munit/README.md +0 -54
  71. data/ext/minimap2/lib/simde/test/munit/example.c +0 -351
  72. data/ext/minimap2/lib/simde/test/munit/meson.build +0 -37
  73. data/ext/minimap2/lib/simde/test/munit/munit.c +0 -2055
  74. data/ext/minimap2/lib/simde/test/munit/munit.h +0 -535
  75. data/ext/minimap2/lib/simde/test/run-tests.c +0 -20
  76. data/ext/minimap2/lib/simde/test/run-tests.h +0 -260
  77. data/ext/minimap2/lib/simde/test/x86/avx.c +0 -13752
  78. data/ext/minimap2/lib/simde/test/x86/avx2.c +0 -9977
  79. data/ext/minimap2/lib/simde/test/x86/avx512bw.c +0 -2664
  80. data/ext/minimap2/lib/simde/test/x86/avx512f.c +0 -10416
  81. data/ext/minimap2/lib/simde/test/x86/avx512vl.c +0 -210
  82. data/ext/minimap2/lib/simde/test/x86/fma.c +0 -2557
  83. data/ext/minimap2/lib/simde/test/x86/meson.build +0 -33
  84. data/ext/minimap2/lib/simde/test/x86/mmx.c +0 -2878
  85. data/ext/minimap2/lib/simde/test/x86/skel.c +0 -2984
  86. data/ext/minimap2/lib/simde/test/x86/sse.c +0 -5121
  87. data/ext/minimap2/lib/simde/test/x86/sse2.c +0 -9860
  88. data/ext/minimap2/lib/simde/test/x86/sse3.c +0 -486
  89. data/ext/minimap2/lib/simde/test/x86/sse4.1.c +0 -3446
  90. data/ext/minimap2/lib/simde/test/x86/sse4.2.c +0 -101
  91. data/ext/minimap2/lib/simde/test/x86/ssse3.c +0 -2084
  92. data/ext/minimap2/lib/simde/test/x86/svml.c +0 -1545
  93. data/ext/minimap2/lib/simde/test/x86/test-avx.h +0 -16
  94. data/ext/minimap2/lib/simde/test/x86/test-avx512.h +0 -25
  95. data/ext/minimap2/lib/simde/test/x86/test-mmx.h +0 -13
  96. data/ext/minimap2/lib/simde/test/x86/test-sse.h +0 -13
  97. data/ext/minimap2/lib/simde/test/x86/test-sse2.h +0 -13
  98. data/ext/minimap2/lib/simde/test/x86/test-x86-internal.h +0 -196
  99. data/ext/minimap2/lib/simde/test/x86/test-x86.c +0 -48
  100. data/ext/minimap2/lib/simde/test/x86/test-x86.h +0 -8
@@ -1,260 +0,0 @@
1
- #if !defined(SIMDE_RUN_TESTS_H)
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- #define SIMDE_RUN_TESTS_H
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-
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- #include "../simde/hedley.h"
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- #include "munit/munit.h"
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- #include "../simde/simde-common.h"
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-
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- #include <stdio.h>
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- #include <math.h>
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-
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- SIMDE_DISABLE_UNWANTED_DIAGNOSTICS
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-
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- #if defined(HEDLEY_MSVC_VERSION)
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- /* Unused function(s) */
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- #pragma warning(disable:4505)
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- #endif
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-
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- HEDLEY_DIAGNOSTIC_PUSH
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-
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- #define SIMDE_TESTS_CONCAT3_EX(a, b, c) a##b##c
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- #define SIMDE_TESTS_CONCAT3(a, b, c) SIMDE_TESTS_CONCAT3_EX(a, b, c)
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-
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- #if defined(__cplusplus)
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- # define SIMDE_TESTS_CURRENT_LANG cpp
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- #else
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- # define SIMDE_TESTS_CURRENT_LANG c
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- #endif
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-
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- #if defined(SIMDE_NO_NATIVE)
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- # define SIMDE_TESTS_CURRENT_NATIVE emul
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- #else
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- # define SIMDE_TESTS_CURRENT_NATIVE native
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- #endif
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-
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- #define SIMDE_TESTS_GENERATE_SYMBOL_FULL(sym, arch, isa, native, lang) \
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- HEDLEY_CONCAT(HEDLEY_CONCAT(HEDLEY_CONCAT(HEDLEY_CONCAT(HEDLEY_CONCAT(HEDLEY_CONCAT(HEDLEY_CONCAT(HEDLEY_CONCAT(simde_tests_, HEDLEY_CONCAT(arch, _)), isa), _), native), _), lang),_),sym)
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-
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- #define SIMDE_TESTS_GENERATE_SYMBOL(sym) \
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- SIMDE_TESTS_GENERATE_SYMBOL_FULL(sym, SIMDE_TESTS_CURRENT_ARCH, SIMDE_TESTS_CURRENT_ISAX, SIMDE_TESTS_CURRENT_NATIVE, SIMDE_TESTS_CURRENT_LANG)
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-
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- #if defined(SIMDE_BUILD_CPP_TESTS)
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- #define SIMDE_TESTS_GENERATE_NAME(name) \
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- "/" HEDLEY_STRINGIFY(name) "/" HEDLEY_STRINGIFY(SIMDE_TESTS_CURRENT_NATIVE) "/" HEDLEY_STRINGIFY(SIMDE_TESTS_CURRENT_LANG)
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- #else
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- #define SIMDE_TESTS_GENERATE_NAME(name) \
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- "/" HEDLEY_STRINGIFY(name) "/" HEDLEY_STRINGIFY(SIMDE_TESTS_CURRENT_NATIVE)
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- #endif
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-
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- #define SIMDE_TESTS_DEFINE_TEST(name) \
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- { (char*) SIMDE_TESTS_GENERATE_NAME(name), test_simde_##name, NULL, NULL, MUNIT_TEST_OPTION_NONE, NULL }
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-
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- HEDLEY_BEGIN_C_DECLS
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-
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- #if !defined(HEDLEY_PGI_VERSION)
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- # define SIMDE_ALMOST_EQUAL_TO "≈"
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- #else
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- # define SIMDE_ALMOST_EQUAL_TO "~=~"
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- #endif
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-
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- SIMDE__FUNCTION_POSSIBLY_UNUSED
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- static int
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- simde_check_double_close(double a, double b, int precision) {
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- const double r = 1.0 * pow(10, HEDLEY_STATIC_CAST(double, precision));
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- return
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- HEDLEY_UNLIKELY(a < (b - r)) ||
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- HEDLEY_UNLIKELY(a > (b + r));
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- }
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-
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- #define SIMDE_TEST_DEFINE_ASSERT_VEC_CLOSE(VT, accessor) \
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- HEDLEY_ALWAYS_INLINE \
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- static void \
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- simde_assert_##VT##_##accessor##_close_ex(int line, const char* file, simde__##VT a, simde__##VT b, int precision) { \
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- simde__##VT##_private \
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- a_ = simde__##VT##_to_private(a), \
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- b_ = simde__##VT##_to_private(b); \
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- \
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- for (int i = 0 ; i < HEDLEY_STATIC_CAST(int, sizeof(a_.accessor) / sizeof(a_.accessor[0])) ; i++) { \
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- if (simde_check_double_close(HEDLEY_STATIC_CAST(double, a_.accessor[i]), HEDLEY_STATIC_CAST(double, b_.accessor[i]), precision)) { \
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- fprintf(stderr, "%s:%d: assertion failed[%d]: %g " SIMDE_ALMOST_EQUAL_TO " %g (precision: 1e-%d)\n", file, line, i, a_.accessor[i], b_.accessor[i], precision); \
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- abort(); \
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- } \
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- } \
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- }
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-
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- SIMDE__FUNCTION_POSSIBLY_UNUSED
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- static void random_f32v(size_t nmemb, simde_float32 v[HEDLEY_ARRAY_PARAM(nmemb)]) {
87
- for (size_t i = 0 ; i < nmemb ; i++) {
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- do {
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- munit_rand_memory(sizeof(v[i]), HEDLEY_REINTERPRET_CAST(uint8_t*, &(v[i])));
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- } while (!isnormal(v[i]));
91
- }
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- }
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-
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- SIMDE__FUNCTION_POSSIBLY_UNUSED
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- static simde_float64 random_f64_range(simde_float64 min, simde_float64 max) {
96
- const simde_float64 range = max - min;
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- simde_float64 x = HEDLEY_STATIC_CAST(simde_float64, munit_rand_uint32());
98
- x /= HEDLEY_STATIC_CAST(simde_float64, UINT32_MAX) / range;
99
- x += min;
100
- return x;
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- }
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-
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- SIMDE__FUNCTION_POSSIBLY_UNUSED
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- static simde_float32 random_f32_range(simde_float32 min, simde_float32 max) {
105
- return HEDLEY_STATIC_CAST(simde_float32, random_f64_range(HEDLEY_STATIC_CAST(double, min), HEDLEY_STATIC_CAST(double, max)));
106
- }
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-
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- SIMDE__FUNCTION_POSSIBLY_UNUSED
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- static void random_f64v(size_t nmemb, simde_float64 v[HEDLEY_ARRAY_PARAM(nmemb)]) {
110
- for (size_t i = 0 ; i < nmemb ; i++) {
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- do {
112
- munit_rand_memory(sizeof(v[i]), HEDLEY_REINTERPRET_CAST(uint8_t*, &(v[i])));
113
- } while (!isnormal(v[i]));
114
- }
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- }
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-
117
- #define random_intv_range(T, nmemb, v, min, max) \
118
- do { \
119
- for (size_t simde_tmp_i_ = 0 ; simde_tmp_i_ < nmemb ; simde_tmp_i_++) { \
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- ((T*) (v))[simde_tmp_i_] = munit_rand_int_range(min, max); \
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- } \
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- } while (0)
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-
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- #define TEST_PREFERRED_ITERATIONS (256)
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-
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- /* I'll probably move these into µnit, but I want to play around with
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- them for a while first. */
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-
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- #define simde_assert_array_full(prefix, suffix, T, fmt, nmemb, a, op, b) \
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- do { \
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- const T* simde__tmp_a_ = (a); \
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- const T* simde__tmp_b_ = (b); \
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- for (size_t simde__i_ = 0 ; simde__i_ < nmemb ; simde__i_++) { \
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- if (!(simde__tmp_a_[simde__i_] op simde__tmp_b_[simde__i_])) { \
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- munit_errorf("assertion failed: (" #a ")[%" MUNIT_SIZE_MODIFIER "u] " #op " (" #b ")[%" MUNIT_SIZE_MODIFIER "u] (" prefix "%" fmt suffix " " #op " " prefix "%" fmt suffix ")", simde__i_, simde__i_, simde__tmp_a_[simde__i_], simde__tmp_b_[simde__i_]); \
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- } \
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- } \
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- } while (0)
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-
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- #define simde_assert_typev(T, fmt, nmemb, a, op, b) \
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- simde_assert_array_full("", "", T, fmt, nmemb, a, op, b)
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-
143
- #define simde_assert_f32v(nmemb, a, op, b) \
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- simde_assert_typev(simde_float32, "g", nmemb, a, op, b)
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-
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- #define simde_assert_intv(nmemb, a, op, b) \
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- simde_assert_typev(int, "d", nmemb, a, op, b)
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-
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- #define simde_assert_uintv(nmemb, a, op, b) \
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- simde_assert_typev(int, "u", nmemb, a, op, b)
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-
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- #define simde_assert_int8v(nmemb, a, op, b) \
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- simde_assert_array_full("", "", munit_int8_t, PRId8, nmemb, a, op, b)
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- #define simde_assert_uint8v(nmemb, a, op, b) \
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- simde_assert_array_full("", "", munit_uint8_t, PRIu8, nmemb, a, op, b)
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- #define simde_assert_int16v(nmemb, a, op, b) \
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- simde_assert_array_full("", "", munit_int16_t, PRId16, nmemb, a, op, b)
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- #define simde_assert_uint16v(nmemb, a, op, b) \
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- simde_assert_array_full("", "", munit_uint16_t, PRIu16, nmemb, a, op, b)
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- #define simde_assert_int32v(nmemb, a, op, b) \
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- simde_assert_array_full("", "", munit_int32_t, PRId32, nmemb, a, op, b)
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- #define simde_assert_uint32v(nmemb, a, op, b) \
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- simde_assert_array_full("", "", munit_uint32_t, PRIu32, nmemb, a, op, b)
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- #define simde_assert_int64v(nmemb, a, op, b) \
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- simde_assert_array_full("", "", munit_int64_t, PRId64, nmemb, a, op, b)
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- #define simde_assert_uint64v(nmemb, a, op, b) \
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- simde_assert_array_full("", "", munit_uint64_t, PRIu64, nmemb, a, op, b)
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-
169
- #define simde_assert_f32v_equal(T, nmemb, a, b, precision) \
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- do { \
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- const T* simde_tmp_a_ = (a); \
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- const T* simde_tmp_b_ = (b); \
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- for (size_t simde_i_ = 0 ; simde_i_ < nmemb ; simde_i_++) { \
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- const T simde_tmp_diff_ = ((simde_tmp_a_[simde_i_] - simde_tmp_b_[simde_i_]) < 0) ? \
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- (simde_tmp_b_[simde_i_] - simde_tmp_a_[simde_i_]) : \
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- (simde_tmp_a_[simde_i_] - simde_tmp_b_[simde_i_]); \
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- if (MUNIT_UNLIKELY(simde_tmp_diff_ > 1e-##precision)) { \
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- munit_errorf("assertion failed: (" #a ")[%" MUNIT_SIZE_MODIFIER "u] == (" #b ")[%" MUNIT_SIZE_MODIFIER "u] (%." #precision "f == %." #precision "f)", simde_i_, simde_i_, simde_tmp_a_[simde_i_], simde_tmp_b_[simde_i_]); \
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- } \
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- } \
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- } while (0)
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-
183
- #define simde_assert_f32v_close(T, nmemb, a, b, precision) \
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- do { \
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- const T* simde_tmp_a_ = (a); \
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- const T* simde_tmp_b_ = (b); \
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- for (size_t simde_i_ = 0 ; simde_i_ < nmemb ; simde_i_++) { \
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- const T simde_tmp_diff_ = ((simde_tmp_a_[simde_i_] - simde_tmp_b_[simde_i_]) < 0) ? \
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- (simde_tmp_b_[simde_i_] - simde_tmp_a_[simde_i_]) : \
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- (simde_tmp_a_[simde_i_] - simde_tmp_b_[simde_i_]); \
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- if (MUNIT_UNLIKELY(simde_tmp_diff_ > precision)) { \
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- munit_errorf("assertion failed: (" #a ")[%" MUNIT_SIZE_MODIFIER "u] == (" #b ")[%" MUNIT_SIZE_MODIFIER "u] (%" #precision ".1f == %" #precision ".1f)", simde_i_, simde_i_, simde_tmp_a_[simde_i_], simde_tmp_b_[simde_i_]); \
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- } \
194
- } \
195
- } while (0)
196
-
197
- #define simde_assert_f64v_close(T, nmemb, a, b, precision) \
198
- do { \
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- const T* simde_tmp_a_ = (a); \
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- const T* simde_tmp_b_ = (b); \
201
- for (size_t simde_i_ = 0 ; simde_i_ < nmemb ; simde_i_++) { \
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- const T simde_tmp_diff_ = ((simde_tmp_a_[simde_i_] - simde_tmp_b_[simde_i_]) < 0) ? \
203
- (simde_tmp_b_[simde_i_] - simde_tmp_a_[simde_i_]) : \
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- (simde_tmp_a_[simde_i_] - simde_tmp_b_[simde_i_]); \
205
- if (MUNIT_UNLIKELY(simde_tmp_diff_ > precision)) { \
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- munit_errorf("assertion failed: (" #a ")[%" MUNIT_SIZE_MODIFIER "u] == (" #b ")[%" MUNIT_SIZE_MODIFIER "u] (%" #precision ".1f == %" #precision ".1f)", simde_i_, simde_i_, simde_tmp_a_[simde_i_], simde_tmp_b_[simde_i_]); \
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- } \
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- } \
209
- } while (0)
210
-
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- /* These probably won't go into µnit; they're similar to the
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- simde_assert_*v macros above, but print in hex. */
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-
214
- #define simde_assert_int8vx(nmemb, a, op, b) \
215
- simde_assert_array_full("0x", "", munit_int8_t, "02" PRIx8, nmemb, a, op, b)
216
- #define simde_assert_uint8vx(nmemb, a, op, b) \
217
- simde_assert_array_full("0x", "", munit_uint8_t, "02" PRIx8, nmemb, a, op, b)
218
- #define simde_assert_int16vx(nmemb, a, op, b) \
219
- simde_assert_array_full("0x", "", munit_int16_t, "04" PRIx16, nmemb, a, op, b)
220
- #define simde_assert_uint16vx(nmemb, a, op, b) \
221
- simde_assert_array_full("0x", "", munit_uint16_t, "04" PRIx16, nmemb, a, op, b)
222
- #define simde_assert_int32vx(nmemb, a, op, b) \
223
- simde_assert_array_full("0x", "", munit_int32_t, "08" PRIx32, nmemb, a, op, b)
224
- #define simde_assert_uint32vx(nmemb, a, op, b) \
225
- simde_assert_array_full("0x", "", munit_uint32_t, "08" PRIx32, nmemb, a, op, b)
226
- #define simde_assert_int64vx(nmemb, a, op, b) \
227
- simde_assert_array_full("0x", "", munit_int64_t, "016" PRIx64, nmemb, a, op, b)
228
- #define simde_assert_uint64vx(nmemb, a, op, b) \
229
- simde_assert_array_full("0x", "", munit_uint64_t, "016" PRIx64, nmemb, a, op, b)
230
-
231
- #define simde_assert_int32_close(value, target) \
232
- do { \
233
- if (value != target && value != target + 1 && value != target - 1) \
234
- munit_errorf("assertion failed: %s == %s (%" PRId32 " == %" PRId32 ")", #value, #target, value, target); \
235
- } while (0)
236
-
237
- #define simde_assert_int64_close(value, target) \
238
- do { \
239
- if (value != target && value != target + 1 && value != target - 1) \
240
- munit_errorf("assertion failed: %s == %s (%" PRId64 " == %" PRId64 ")", #value, #target, value, target); \
241
- } while (0)
242
-
243
- HEDLEY_END_C_DECLS
244
-
245
- HEDLEY_DIAGNOSTIC_POP
246
-
247
- #if HEDLEY_HAS_WARNING("-Wpadded")
248
- # pragma clang diagnostic ignored "-Wpadded"
249
- #elif defined(HEDLEY_MSVC_VERSION)
250
- # pragma warning(disable:4324)
251
- #endif
252
-
253
- #if defined(HEDLEY_MSVC_VERSION)
254
- /* nonstandard extension used : non-lvalue array converted to pointer */
255
- #pragma warning(disable:4223)
256
- /* Conditional expression is a constant */
257
- #pragma warning(disable:4127)
258
- #endif
259
-
260
- #endif /* !defined(SIMDE_RUN_TESTS_H) */