minimap2 0.2.24.3 → 0.2.24.6

Sign up to get free protection for your applications and to get access to all the features.
Files changed (101) hide show
  1. checksums.yaml +4 -4
  2. data/ext/minimap2/lib/simde/CONTRIBUTING.md +114 -0
  3. data/ext/minimap2/lib/simde/COPYING +20 -0
  4. data/ext/minimap2/lib/simde/README.md +333 -0
  5. data/ext/minimap2/lib/simde/amalgamate.py +58 -0
  6. data/ext/minimap2/lib/simde/meson.build +33 -0
  7. data/ext/minimap2/lib/simde/netlify.toml +20 -0
  8. data/ext/minimap2/lib/simde/simde/arm/neon/float32x2.h +140 -0
  9. data/ext/minimap2/lib/simde/simde/arm/neon/float32x4.h +137 -0
  10. data/ext/minimap2/lib/simde/simde/arm/neon/float64x1.h +142 -0
  11. data/ext/minimap2/lib/simde/simde/arm/neon/float64x2.h +145 -0
  12. data/ext/minimap2/lib/simde/simde/arm/neon/int16x4.h +140 -0
  13. data/ext/minimap2/lib/simde/simde/arm/neon/int16x8.h +145 -0
  14. data/ext/minimap2/lib/simde/simde/arm/neon/int32x2.h +140 -0
  15. data/ext/minimap2/lib/simde/simde/arm/neon/int32x4.h +143 -0
  16. data/ext/minimap2/lib/simde/simde/arm/neon/int64x1.h +137 -0
  17. data/ext/minimap2/lib/simde/simde/arm/neon/int64x2.h +141 -0
  18. data/ext/minimap2/lib/simde/simde/arm/neon/int8x16.h +147 -0
  19. data/ext/minimap2/lib/simde/simde/arm/neon/int8x8.h +141 -0
  20. data/ext/minimap2/lib/simde/simde/arm/neon/uint16x4.h +134 -0
  21. data/ext/minimap2/lib/simde/simde/arm/neon/uint16x8.h +138 -0
  22. data/ext/minimap2/lib/simde/simde/arm/neon/uint32x2.h +134 -0
  23. data/ext/minimap2/lib/simde/simde/arm/neon/uint32x4.h +137 -0
  24. data/ext/minimap2/lib/simde/simde/arm/neon/uint64x1.h +131 -0
  25. data/ext/minimap2/lib/simde/simde/arm/neon/uint64x2.h +135 -0
  26. data/ext/minimap2/lib/simde/simde/arm/neon/uint8x16.h +141 -0
  27. data/ext/minimap2/lib/simde/simde/arm/neon/uint8x8.h +135 -0
  28. data/ext/minimap2/lib/simde/simde/arm/neon.h +97 -0
  29. data/ext/minimap2/lib/simde/simde/check.h +267 -0
  30. data/ext/minimap2/lib/simde/simde/debug-trap.h +83 -0
  31. data/ext/minimap2/lib/simde/simde/hedley.h +1899 -0
  32. data/ext/minimap2/lib/simde/simde/simde-arch.h +445 -0
  33. data/ext/minimap2/lib/simde/simde/simde-common.h +697 -0
  34. data/ext/minimap2/lib/simde/simde/x86/avx.h +5385 -0
  35. data/ext/minimap2/lib/simde/simde/x86/avx2.h +2402 -0
  36. data/ext/minimap2/lib/simde/simde/x86/avx512bw.h +391 -0
  37. data/ext/minimap2/lib/simde/simde/x86/avx512f.h +3389 -0
  38. data/ext/minimap2/lib/simde/simde/x86/avx512vl.h +112 -0
  39. data/ext/minimap2/lib/simde/simde/x86/fma.h +659 -0
  40. data/ext/minimap2/lib/simde/simde/x86/mmx.h +2210 -0
  41. data/ext/minimap2/lib/simde/simde/x86/sse.h +3696 -0
  42. data/ext/minimap2/lib/simde/simde/x86/sse2.h +5991 -0
  43. data/ext/minimap2/lib/simde/simde/x86/sse3.h +343 -0
  44. data/ext/minimap2/lib/simde/simde/x86/sse4.1.h +1783 -0
  45. data/ext/minimap2/lib/simde/simde/x86/sse4.2.h +105 -0
  46. data/ext/minimap2/lib/simde/simde/x86/ssse3.h +1053 -0
  47. data/ext/minimap2/lib/simde/simde/x86/svml.h +543 -0
  48. data/ext/minimap2/lib/simde/test/CMakeLists.txt +166 -0
  49. data/ext/minimap2/lib/simde/test/arm/meson.build +4 -0
  50. data/ext/minimap2/lib/simde/test/arm/neon/meson.build +23 -0
  51. data/ext/minimap2/lib/simde/test/arm/neon/skel.c +871 -0
  52. data/ext/minimap2/lib/simde/test/arm/neon/test-neon-internal.h +134 -0
  53. data/ext/minimap2/lib/simde/test/arm/neon/test-neon.c +39 -0
  54. data/ext/minimap2/lib/simde/test/arm/neon/test-neon.h +10 -0
  55. data/ext/minimap2/lib/simde/test/arm/neon/vadd.c +1260 -0
  56. data/ext/minimap2/lib/simde/test/arm/neon/vdup_n.c +873 -0
  57. data/ext/minimap2/lib/simde/test/arm/neon/vmul.c +1084 -0
  58. data/ext/minimap2/lib/simde/test/arm/neon/vsub.c +1260 -0
  59. data/ext/minimap2/lib/simde/test/arm/test-arm-internal.h +18 -0
  60. data/ext/minimap2/lib/simde/test/arm/test-arm.c +20 -0
  61. data/ext/minimap2/lib/simde/test/arm/test-arm.h +8 -0
  62. data/ext/minimap2/lib/simde/test/cmake/AddCompilerFlags.cmake +171 -0
  63. data/ext/minimap2/lib/simde/test/cmake/ExtraWarningFlags.cmake +68 -0
  64. data/ext/minimap2/lib/simde/test/meson.build +64 -0
  65. data/ext/minimap2/lib/simde/test/munit/COPYING +21 -0
  66. data/ext/minimap2/lib/simde/test/munit/Makefile +55 -0
  67. data/ext/minimap2/lib/simde/test/munit/README.md +54 -0
  68. data/ext/minimap2/lib/simde/test/munit/example.c +351 -0
  69. data/ext/minimap2/lib/simde/test/munit/meson.build +37 -0
  70. data/ext/minimap2/lib/simde/test/munit/munit.c +2055 -0
  71. data/ext/minimap2/lib/simde/test/munit/munit.h +535 -0
  72. data/ext/minimap2/lib/simde/test/run-tests.c +20 -0
  73. data/ext/minimap2/lib/simde/test/run-tests.h +260 -0
  74. data/ext/minimap2/lib/simde/test/x86/avx.c +13752 -0
  75. data/ext/minimap2/lib/simde/test/x86/avx2.c +9977 -0
  76. data/ext/minimap2/lib/simde/test/x86/avx512bw.c +2664 -0
  77. data/ext/minimap2/lib/simde/test/x86/avx512f.c +10416 -0
  78. data/ext/minimap2/lib/simde/test/x86/avx512vl.c +210 -0
  79. data/ext/minimap2/lib/simde/test/x86/fma.c +2557 -0
  80. data/ext/minimap2/lib/simde/test/x86/meson.build +33 -0
  81. data/ext/minimap2/lib/simde/test/x86/mmx.c +2878 -0
  82. data/ext/minimap2/lib/simde/test/x86/skel.c +2984 -0
  83. data/ext/minimap2/lib/simde/test/x86/sse.c +5121 -0
  84. data/ext/minimap2/lib/simde/test/x86/sse2.c +9860 -0
  85. data/ext/minimap2/lib/simde/test/x86/sse3.c +486 -0
  86. data/ext/minimap2/lib/simde/test/x86/sse4.1.c +3446 -0
  87. data/ext/minimap2/lib/simde/test/x86/sse4.2.c +101 -0
  88. data/ext/minimap2/lib/simde/test/x86/ssse3.c +2084 -0
  89. data/ext/minimap2/lib/simde/test/x86/svml.c +1545 -0
  90. data/ext/minimap2/lib/simde/test/x86/test-avx.h +16 -0
  91. data/ext/minimap2/lib/simde/test/x86/test-avx512.h +25 -0
  92. data/ext/minimap2/lib/simde/test/x86/test-mmx.h +13 -0
  93. data/ext/minimap2/lib/simde/test/x86/test-sse.h +13 -0
  94. data/ext/minimap2/lib/simde/test/x86/test-sse2.h +13 -0
  95. data/ext/minimap2/lib/simde/test/x86/test-x86-internal.h +196 -0
  96. data/ext/minimap2/lib/simde/test/x86/test-x86.c +48 -0
  97. data/ext/minimap2/lib/simde/test/x86/test-x86.h +8 -0
  98. data/lib/minimap2/aligner.rb +2 -2
  99. data/lib/minimap2/ffi/constants.rb +3 -0
  100. data/lib/minimap2/version.rb +1 -1
  101. metadata +99 -3
@@ -0,0 +1,134 @@
1
+ #if !defined(SIMDE_TESTS_NEON_INTERNAL_H)
2
+ #define SIMDE_TESTS_CURRENT_ARCH arm
3
+ #define SIMDE_TESTS_CURRENT_ISAX neon
4
+
5
+ #include "../../run-tests.h"
6
+ #include "../../../simde/arm/neon.h"
7
+
8
+ HEDLEY_BEGIN_C_DECLS
9
+
10
+ #define SIMDE_TESTS_GENERATE_SUITE_GETTERS(op) \
11
+ MunitSuite* SIMDE_TESTS_GENERATE_SYMBOL_FULL(op, SIMDE_TESTS_CURRENT_ARCH, neon, native, c) (void); \
12
+ MunitSuite* SIMDE_TESTS_GENERATE_SYMBOL_FULL(op, SIMDE_TESTS_CURRENT_ARCH, neon, native, cpp)(void); \
13
+ MunitSuite* SIMDE_TESTS_GENERATE_SYMBOL_FULL(op, SIMDE_TESTS_CURRENT_ARCH, neon, emul, c) (void); \
14
+ MunitSuite* SIMDE_TESTS_GENERATE_SYMBOL_FULL(op, SIMDE_TESTS_CURRENT_ARCH, neon, emul, cpp)(void)
15
+
16
+ #define SIMDE_TESTS_NEON_GENERATE_INTRIN_FULL(vtype, variant) HEDLEY_CONCAT(v, SIMDE_TESTS_CONCAT3(HEDLEY_CONCAT(SIMDE_TESTS_CURRENT_NEON_OP, vtype), _, variant))
17
+ #define SIMDE_TESTS_NEON_GENERATE_INTRIN(vtype, variant) HEDLEY_CONCAT(v, SIMDE_TESTS_CONCAT3(SIMDE_TESTS_CURRENT_NEON_OP, _, variant))
18
+
19
+ #define SIMDE_TESTS_NEON_DEFINE_TEST_FULL(vtype, variant) \
20
+ { (char*) HEDLEY_STRINGIFY(vtype) "_" HEDLEY_STRINGIFY(variant) "/" HEDLEY_STRINGIFY(SIMDE_TESTS_CURRENT_NATIVE) "/" HEDLEY_STRINGIFY(SIMDE_TESTS_CURRENT_LANG), HEDLEY_CONCAT(test_simde_, SIMDE_TESTS_NEON_GENERATE_INTRIN_FULL(vtype, variant)), NULL, NULL, MUNIT_TEST_OPTION_NONE, NULL }
21
+ #define SIMDE_TESTS_NEON_DEFINE_TEST(variant) \
22
+ { (char*) "_" HEDLEY_STRINGIFY(variant) "/" HEDLEY_STRINGIFY(SIMDE_TESTS_CURRENT_NATIVE) "/" HEDLEY_STRINGIFY(SIMDE_TESTS_CURRENT_LANG), HEDLEY_CONCAT(test_simde_, SIMDE_TESTS_NEON_GENERATE_INTRIN(vtype, variant)), NULL, NULL, MUNIT_TEST_OPTION_NONE, NULL }
23
+
24
+ SIMDE_TESTS_GENERATE_SUITE_GETTERS(add);
25
+ SIMDE_TESTS_GENERATE_SUITE_GETTERS(dup);
26
+ SIMDE_TESTS_GENERATE_SUITE_GETTERS(mul);
27
+ SIMDE_TESTS_GENERATE_SUITE_GETTERS(sub);
28
+
29
+ #define simde_neon_assert_int8x8(a, op, b) \
30
+ simde_assert_typev(int8_t, PRId8, (sizeof(a) / sizeof(int8_t)), (const int8_t*) &(a), op, (const int8_t*) &(b))
31
+ #define simde_neon_assert_int16x4(a, op, b) \
32
+ simde_assert_typev(int16_t, PRId16, (sizeof(a) / sizeof(int16_t)), (const int16_t*) &(a), op, (const int16_t*) &(b))
33
+ #define simde_neon_assert_int32x2(a, op, b) \
34
+ simde_assert_typev(int32_t, PRId32, (sizeof(a) / sizeof(int32_t)), (const int32_t*) &(a), op, (const int32_t*) &(b))
35
+ #define simde_neon_assert_int64x1(a, op, b) \
36
+ simde_assert_typev(int64_t, PRId64, (sizeof(a) / sizeof(int64_t)), (const int64_t*) &(a), op, (const int64_t*) &(b))
37
+ #define simde_neon_assert_uint8x8(a, op, b) \
38
+ simde_assert_typev(uint8_t, PRId8, (sizeof(a) / sizeof(uint8_t)), (const uint8_t*) &(a), op, (const uint8_t*) &(b))
39
+ #define simde_neon_assert_uint16x4(a, op, b) \
40
+ simde_assert_typev(uint16_t, PRId16, (sizeof(a) / sizeof(uint16_t)), (const uint16_t*) &(a), op, (const uint16_t*) &(b))
41
+ #define simde_neon_assert_uint32x2(a, op, b) \
42
+ simde_assert_typev(uint32_t, PRId32, (sizeof(a) / sizeof(uint32_t)), (const uint32_t*) &(a), op, (const uint32_t*) &(b))
43
+ #define simde_neon_assert_uint64x1(a, op, b) \
44
+ simde_assert_typev(uint64_t, PRId64, (sizeof(a) / sizeof(uint64_t)), (const uint64_t*) &(a), op, (const uint64_t*) &(b))
45
+ #define simde_neon_assert_float32x2(a, op, b) \
46
+ simde_assert_typev(simde_float32, "f", (sizeof(a) / sizeof(simde_float32)), (const simde_float32*) &(a), op, (const simde_float32*) &(b))
47
+ #define simde_neon_assert_float32x2_equal(a, b, precision) \
48
+ simde_assert_f32v_equal(simde_float32, (sizeof(a) / sizeof(simde_float32)), (const simde_float32*) &(a), (const simde_float32*) &(b), precision)
49
+ #define simde_neon_assert_float64x1(a, op, b) \
50
+ simde_assert_typev(simde_float64, "f", (sizeof(a) / sizeof(simde_float64)), (const simde_float64*) &(a), op, (const simde_float64*) &(b))
51
+ #define simde_neon_assert_float64x1_equal(a, b, precision) \
52
+ simde_assert_f32v_equal(simde_float64, (sizeof(a) / sizeof(simde_float64)), (const simde_float64*) &(a), (const simde_float64*) &(b), precision)
53
+
54
+ #define simde_neon_assert_int8x16(a, op, b) \
55
+ simde_assert_typev(int8_t, PRId8, (sizeof(a) / sizeof(int8_t)), (const int8_t*) &(a), op, (const int8_t*) &(b))
56
+ #define simde_neon_assert_int16x8(a, op, b) \
57
+ simde_assert_typev(int16_t, PRId16, (sizeof(a) / sizeof(int16_t)), (const int16_t*) &(a), op, (const int16_t*) &(b))
58
+ #define simde_neon_assert_int32x4(a, op, b) \
59
+ simde_assert_typev(int32_t, PRId32, (sizeof(a) / sizeof(int32_t)), (const int32_t*) &(a), op, (const int32_t*) &(b))
60
+ #define simde_neon_assert_int64x2(a, op, b) \
61
+ simde_assert_typev(int64_t, PRId64, (sizeof(a) / sizeof(int64_t)), (const int64_t*) &(a), op, (const int64_t*) &(b))
62
+ #define simde_neon_assert_uint8x16(a, op, b) \
63
+ simde_assert_typev(uint8_t, PRId8, (sizeof(a) / sizeof(uint8_t)), (const uint8_t*) &(a), op, (const uint8_t*) &(b))
64
+ #define simde_neon_assert_uint16x8(a, op, b) \
65
+ simde_assert_typev(uint16_t, PRId16, (sizeof(a) / sizeof(uint16_t)), (const uint16_t*) &(a), op, (const uint16_t*) &(b))
66
+ #define simde_neon_assert_uint32x4(a, op, b) \
67
+ simde_assert_typev(uint32_t, PRId32, (sizeof(a) / sizeof(uint32_t)), (const uint32_t*) &(a), op, (const uint32_t*) &(b))
68
+ #define simde_neon_assert_uint64x2(a, op, b) \
69
+ simde_assert_typev(uint64_t, PRId64, (sizeof(a) / sizeof(uint64_t)), (const uint64_t*) &(a), op, (const uint64_t*) &(b))
70
+ #define simde_neon_assert_float32x4(a, op, b) \
71
+ simde_assert_typev(simde_float32, "f", (sizeof(a) / sizeof(simde_float32)), (const simde_float32*) &(a), op, (const simde_float32*) &(b))
72
+ #define simde_neon_assert_float32x4_equal(a, b, precision) \
73
+ simde_assert_f32v_equal(simde_float32, (sizeof(a) / sizeof(simde_float32)), (const simde_float32*) &(a), (const simde_float32*) &(b), precision)
74
+ #define simde_neon_assert_float64x2(a, op, b) \
75
+ simde_assert_typev(simde_float64, "f", (sizeof(a) / sizeof(simde_float64)), (const simde_float64*) &(a), op, (const simde_float64*) &(b))
76
+ #define simde_neon_assert_float64x2_equal(a, b, precision) \
77
+ simde_assert_f32v_equal(simde_float64, (sizeof(a) / sizeof(simde_float64)), (const simde_float64*) &(a), (const simde_float64*) &(b), precision)
78
+
79
+ #include <math.h>
80
+
81
+ #define SIMDE_NEON_GEN_RAND_ARRAY_FUNC(L, N, V) \
82
+ SIMDE__FUNCTION_ATTRIBUTES \
83
+ simde_float##L##x##N##_t \
84
+ simde_neon_random_float##L##x##N(void) { \
85
+ simde_float##L v[sizeof(simde_float##L##x##N##_t) / sizeof(simde_float##L)]; \
86
+ for (size_t i = 0 ; i < sizeof(v) / sizeof(v[0]) ; i++) { \
87
+ v[i] = (simde_float##L) (round(random_f64_range(-1000.0, 1000.0) * 100.0) / 100.0); \
88
+ } \
89
+ return simde_vld1##V##_f##L(v); \
90
+ }
91
+
92
+ SIMDE__FUNCTION_ATTRIBUTES
93
+ simde_float32x2_t
94
+ simde_neon_random_float32x2(void) {
95
+ simde_float32 v[sizeof(simde_float32x2_t) / sizeof(simde_float32)];
96
+ for (size_t i = 0 ; i < sizeof(v) / sizeof(v[0]) ; i++) {
97
+ v[i] = (simde_float32) (round(random_f64_range(-1000.0, 1000.0) * 100.0) / 100.0);
98
+ }
99
+ return simde_vld1_f32(v);
100
+ }
101
+
102
+ SIMDE__FUNCTION_ATTRIBUTES
103
+ simde_float64x1_t
104
+ simde_neon_random_float64x1(void) {
105
+ simde_float64 v[sizeof(simde_float64x1_t) / sizeof(simde_float64)];
106
+ for (size_t i = 0 ; i < sizeof(v) / sizeof(v[0]) ; i++) {
107
+ v[i] = (simde_float64) (round(random_f64_range(-1000.0, 1000.0) * 100.0) / 100.0);
108
+ }
109
+ return simde_vld1_f64(v);
110
+ }
111
+
112
+ SIMDE__FUNCTION_ATTRIBUTES
113
+ simde_float32x4_t
114
+ simde_neon_random_float32x4(void) {
115
+ simde_float32 v[sizeof(simde_float32x4_t) / sizeof(simde_float32)];
116
+ for (size_t i = 0 ; i < sizeof(v) / sizeof(v[0]) ; i++) {
117
+ v[i] = (simde_float32) (round(random_f64_range(-1000.0, 1000.0) * 100.0) / 100.0);
118
+ }
119
+ return simde_vld1q_f32(v);
120
+ }
121
+
122
+ SIMDE__FUNCTION_ATTRIBUTES
123
+ simde_float64x2_t
124
+ simde_neon_random_float64x2(void) {
125
+ simde_float64 v[sizeof(simde_float64x2_t) / sizeof(simde_float64)];
126
+ for (size_t i = 0 ; i < sizeof(v) / sizeof(v[0]) ; i++) {
127
+ v[i] = (simde_float64) (round(random_f64_range(-1000.0, 1000.0) * 100.0) / 100.0);
128
+ }
129
+ return simde_vld1q_f64(v);
130
+ }
131
+
132
+ HEDLEY_END_C_DECLS
133
+
134
+ #endif /* !defined(SIMDE_TESTS_NEON_INTERNAL_H) */
@@ -0,0 +1,39 @@
1
+ #include "test-neon.h"
2
+ #include "test-neon-internal.h"
3
+
4
+ #include <stdio.h>
5
+
6
+ #if defined(SIMDE_BUILD_CPP_TESTS)
7
+ #define CHILD_GROUP_LEN 4
8
+ #define SET_CHILDREN_FOR_OP(op) \
9
+ children[i++] = *SIMDE_TESTS_GENERATE_SYMBOL_FULL(op, SIMDE_TESTS_CURRENT_ARCH, neon, native, c) (); \
10
+ children[i++] = *SIMDE_TESTS_GENERATE_SYMBOL_FULL(op, SIMDE_TESTS_CURRENT_ARCH, neon, emul, c) (); \
11
+ children[i++] = *SIMDE_TESTS_GENERATE_SYMBOL_FULL(op, SIMDE_TESTS_CURRENT_ARCH, neon, native, cpp)(); \
12
+ children[i++] = *SIMDE_TESTS_GENERATE_SYMBOL_FULL(op, SIMDE_TESTS_CURRENT_ARCH, neon, emul, cpp)()
13
+ #else
14
+ #define CHILD_GROUP_LEN 2
15
+ #define SET_CHILDREN_FOR_OP(op) \
16
+ children[i++] = *SIMDE_TESTS_GENERATE_SYMBOL_FULL(op, SIMDE_TESTS_CURRENT_ARCH, neon, native, c) (); \
17
+ children[i++] = *SIMDE_TESTS_GENERATE_SYMBOL_FULL(op, SIMDE_TESTS_CURRENT_ARCH, neon, emul, c) ()
18
+
19
+ #endif
20
+
21
+ MunitSuite*
22
+ simde_tests_arm_neon_get_suite(void) {
23
+ static MunitSuite children[(4 * CHILD_GROUP_LEN) + 1];
24
+ static MunitSuite suite = { "/neon", NULL, children, 1, MUNIT_SUITE_OPTION_NONE };
25
+ static const MunitSuite empty = { NULL, NULL, NULL, 1, MUNIT_SUITE_OPTION_NONE };
26
+
27
+ size_t i = 0;
28
+
29
+ SET_CHILDREN_FOR_OP(add);
30
+ SET_CHILDREN_FOR_OP(dup);
31
+ SET_CHILDREN_FOR_OP(mul);
32
+ SET_CHILDREN_FOR_OP(sub);
33
+
34
+ children[i++] = empty;
35
+
36
+ munit_assert_size(i, ==, sizeof(children) / sizeof(children[0]));
37
+
38
+ return &suite;
39
+ }
@@ -0,0 +1,10 @@
1
+ #include "../../../simde/hedley.h"
2
+ #include "../../munit/munit.h"
3
+
4
+ #define SIMDE_TESTS_CURRENT_ISAX neon
5
+
6
+ HEDLEY_BEGIN_C_DECLS
7
+
8
+ MunitSuite* simde_tests_arm_neon_get_suite(void);
9
+
10
+ HEDLEY_END_C_DECLS