minimap2 0.2.24.3 → 0.2.24.6

Sign up to get free protection for your applications and to get access to all the features.
Files changed (101) hide show
  1. checksums.yaml +4 -4
  2. data/ext/minimap2/lib/simde/CONTRIBUTING.md +114 -0
  3. data/ext/minimap2/lib/simde/COPYING +20 -0
  4. data/ext/minimap2/lib/simde/README.md +333 -0
  5. data/ext/minimap2/lib/simde/amalgamate.py +58 -0
  6. data/ext/minimap2/lib/simde/meson.build +33 -0
  7. data/ext/minimap2/lib/simde/netlify.toml +20 -0
  8. data/ext/minimap2/lib/simde/simde/arm/neon/float32x2.h +140 -0
  9. data/ext/minimap2/lib/simde/simde/arm/neon/float32x4.h +137 -0
  10. data/ext/minimap2/lib/simde/simde/arm/neon/float64x1.h +142 -0
  11. data/ext/minimap2/lib/simde/simde/arm/neon/float64x2.h +145 -0
  12. data/ext/minimap2/lib/simde/simde/arm/neon/int16x4.h +140 -0
  13. data/ext/minimap2/lib/simde/simde/arm/neon/int16x8.h +145 -0
  14. data/ext/minimap2/lib/simde/simde/arm/neon/int32x2.h +140 -0
  15. data/ext/minimap2/lib/simde/simde/arm/neon/int32x4.h +143 -0
  16. data/ext/minimap2/lib/simde/simde/arm/neon/int64x1.h +137 -0
  17. data/ext/minimap2/lib/simde/simde/arm/neon/int64x2.h +141 -0
  18. data/ext/minimap2/lib/simde/simde/arm/neon/int8x16.h +147 -0
  19. data/ext/minimap2/lib/simde/simde/arm/neon/int8x8.h +141 -0
  20. data/ext/minimap2/lib/simde/simde/arm/neon/uint16x4.h +134 -0
  21. data/ext/minimap2/lib/simde/simde/arm/neon/uint16x8.h +138 -0
  22. data/ext/minimap2/lib/simde/simde/arm/neon/uint32x2.h +134 -0
  23. data/ext/minimap2/lib/simde/simde/arm/neon/uint32x4.h +137 -0
  24. data/ext/minimap2/lib/simde/simde/arm/neon/uint64x1.h +131 -0
  25. data/ext/minimap2/lib/simde/simde/arm/neon/uint64x2.h +135 -0
  26. data/ext/minimap2/lib/simde/simde/arm/neon/uint8x16.h +141 -0
  27. data/ext/minimap2/lib/simde/simde/arm/neon/uint8x8.h +135 -0
  28. data/ext/minimap2/lib/simde/simde/arm/neon.h +97 -0
  29. data/ext/minimap2/lib/simde/simde/check.h +267 -0
  30. data/ext/minimap2/lib/simde/simde/debug-trap.h +83 -0
  31. data/ext/minimap2/lib/simde/simde/hedley.h +1899 -0
  32. data/ext/minimap2/lib/simde/simde/simde-arch.h +445 -0
  33. data/ext/minimap2/lib/simde/simde/simde-common.h +697 -0
  34. data/ext/minimap2/lib/simde/simde/x86/avx.h +5385 -0
  35. data/ext/minimap2/lib/simde/simde/x86/avx2.h +2402 -0
  36. data/ext/minimap2/lib/simde/simde/x86/avx512bw.h +391 -0
  37. data/ext/minimap2/lib/simde/simde/x86/avx512f.h +3389 -0
  38. data/ext/minimap2/lib/simde/simde/x86/avx512vl.h +112 -0
  39. data/ext/minimap2/lib/simde/simde/x86/fma.h +659 -0
  40. data/ext/minimap2/lib/simde/simde/x86/mmx.h +2210 -0
  41. data/ext/minimap2/lib/simde/simde/x86/sse.h +3696 -0
  42. data/ext/minimap2/lib/simde/simde/x86/sse2.h +5991 -0
  43. data/ext/minimap2/lib/simde/simde/x86/sse3.h +343 -0
  44. data/ext/minimap2/lib/simde/simde/x86/sse4.1.h +1783 -0
  45. data/ext/minimap2/lib/simde/simde/x86/sse4.2.h +105 -0
  46. data/ext/minimap2/lib/simde/simde/x86/ssse3.h +1053 -0
  47. data/ext/minimap2/lib/simde/simde/x86/svml.h +543 -0
  48. data/ext/minimap2/lib/simde/test/CMakeLists.txt +166 -0
  49. data/ext/minimap2/lib/simde/test/arm/meson.build +4 -0
  50. data/ext/minimap2/lib/simde/test/arm/neon/meson.build +23 -0
  51. data/ext/minimap2/lib/simde/test/arm/neon/skel.c +871 -0
  52. data/ext/minimap2/lib/simde/test/arm/neon/test-neon-internal.h +134 -0
  53. data/ext/minimap2/lib/simde/test/arm/neon/test-neon.c +39 -0
  54. data/ext/minimap2/lib/simde/test/arm/neon/test-neon.h +10 -0
  55. data/ext/minimap2/lib/simde/test/arm/neon/vadd.c +1260 -0
  56. data/ext/minimap2/lib/simde/test/arm/neon/vdup_n.c +873 -0
  57. data/ext/minimap2/lib/simde/test/arm/neon/vmul.c +1084 -0
  58. data/ext/minimap2/lib/simde/test/arm/neon/vsub.c +1260 -0
  59. data/ext/minimap2/lib/simde/test/arm/test-arm-internal.h +18 -0
  60. data/ext/minimap2/lib/simde/test/arm/test-arm.c +20 -0
  61. data/ext/minimap2/lib/simde/test/arm/test-arm.h +8 -0
  62. data/ext/minimap2/lib/simde/test/cmake/AddCompilerFlags.cmake +171 -0
  63. data/ext/minimap2/lib/simde/test/cmake/ExtraWarningFlags.cmake +68 -0
  64. data/ext/minimap2/lib/simde/test/meson.build +64 -0
  65. data/ext/minimap2/lib/simde/test/munit/COPYING +21 -0
  66. data/ext/minimap2/lib/simde/test/munit/Makefile +55 -0
  67. data/ext/minimap2/lib/simde/test/munit/README.md +54 -0
  68. data/ext/minimap2/lib/simde/test/munit/example.c +351 -0
  69. data/ext/minimap2/lib/simde/test/munit/meson.build +37 -0
  70. data/ext/minimap2/lib/simde/test/munit/munit.c +2055 -0
  71. data/ext/minimap2/lib/simde/test/munit/munit.h +535 -0
  72. data/ext/minimap2/lib/simde/test/run-tests.c +20 -0
  73. data/ext/minimap2/lib/simde/test/run-tests.h +260 -0
  74. data/ext/minimap2/lib/simde/test/x86/avx.c +13752 -0
  75. data/ext/minimap2/lib/simde/test/x86/avx2.c +9977 -0
  76. data/ext/minimap2/lib/simde/test/x86/avx512bw.c +2664 -0
  77. data/ext/minimap2/lib/simde/test/x86/avx512f.c +10416 -0
  78. data/ext/minimap2/lib/simde/test/x86/avx512vl.c +210 -0
  79. data/ext/minimap2/lib/simde/test/x86/fma.c +2557 -0
  80. data/ext/minimap2/lib/simde/test/x86/meson.build +33 -0
  81. data/ext/minimap2/lib/simde/test/x86/mmx.c +2878 -0
  82. data/ext/minimap2/lib/simde/test/x86/skel.c +2984 -0
  83. data/ext/minimap2/lib/simde/test/x86/sse.c +5121 -0
  84. data/ext/minimap2/lib/simde/test/x86/sse2.c +9860 -0
  85. data/ext/minimap2/lib/simde/test/x86/sse3.c +486 -0
  86. data/ext/minimap2/lib/simde/test/x86/sse4.1.c +3446 -0
  87. data/ext/minimap2/lib/simde/test/x86/sse4.2.c +101 -0
  88. data/ext/minimap2/lib/simde/test/x86/ssse3.c +2084 -0
  89. data/ext/minimap2/lib/simde/test/x86/svml.c +1545 -0
  90. data/ext/minimap2/lib/simde/test/x86/test-avx.h +16 -0
  91. data/ext/minimap2/lib/simde/test/x86/test-avx512.h +25 -0
  92. data/ext/minimap2/lib/simde/test/x86/test-mmx.h +13 -0
  93. data/ext/minimap2/lib/simde/test/x86/test-sse.h +13 -0
  94. data/ext/minimap2/lib/simde/test/x86/test-sse2.h +13 -0
  95. data/ext/minimap2/lib/simde/test/x86/test-x86-internal.h +196 -0
  96. data/ext/minimap2/lib/simde/test/x86/test-x86.c +48 -0
  97. data/ext/minimap2/lib/simde/test/x86/test-x86.h +8 -0
  98. data/lib/minimap2/aligner.rb +2 -2
  99. data/lib/minimap2/ffi/constants.rb +3 -0
  100. data/lib/minimap2/version.rb +1 -1
  101. metadata +99 -3
@@ -0,0 +1,112 @@
1
+ /* Permission is hereby granted, free of charge, to any person
2
+ * obtaining a copy of this software and associated documentation
3
+ * files (the "Software"), to deal in the Software without
4
+ * restriction, including without limitation the rights to use, copy,
5
+ * modify, merge, publish, distribute, sublicense, and/or sell copies
6
+ * of the Software, and to permit persons to whom the Software is
7
+ * furnished to do so, subject to the following conditions:
8
+ *
9
+ * The above copyright notice and this permission notice shall be
10
+ * included in all copies or substantial portions of the Software.
11
+ *
12
+ * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
13
+ * EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
14
+ * MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
15
+ * NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS
16
+ * BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
17
+ * ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
18
+ * CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
19
+ * SOFTWARE.
20
+ *
21
+ * Copyright:
22
+ * 2020 Evan Nemerson <evan@nemerson.com>
23
+ */
24
+
25
+ #if !defined(SIMDE__AVX512VL_H)
26
+ #define SIMDE__AVX512VL_H
27
+ #include "avx512bw.h"
28
+
29
+ HEDLEY_DIAGNOSTIC_PUSH
30
+ SIMDE_DISABLE_UNWANTED_DIAGNOSTICS
31
+
32
+ #if defined(SIMDE_AVX512VL_NATIVE)
33
+ #undef SIMDE_AVX512VL_NATIVE
34
+ #endif
35
+ #if defined(SIMDE_ARCH_X86_AVX512VL) && !defined(SIMDE_AVX512VL_NO_NATIVE) && !defined(SIMDE_NO_NATIVE)
36
+ #define SIMDE_AVX512VL_NATIVE
37
+ #elif defined(SIMDE_ARCH_ARM_NEON) && !defined(SIMDE_AVX512VL_NO_NEON) && !defined(SIMDE_NO_NEON)
38
+ #define SIMDE_AVX512VL_NEON
39
+ #elif defined(SIMDE_ARCH_POWER_ALTIVEC)
40
+ #define SIMDE_AVX512VL_POWER_ALTIVEC
41
+ #endif
42
+
43
+ #if defined(SIMDE_AVX512VL_NATIVE)
44
+ #include <immintrin.h>
45
+ #endif
46
+
47
+ #if defined(SIMDE_AVX512VL_POWER_ALTIVEC)
48
+ #include <altivec.h>
49
+ #endif
50
+
51
+ #if !defined(SIMDE_AVX512VL_NATIVE) && defined(SIMDE_ENABLE_NATIVE_ALIASES)
52
+ #define SIMDE_AVX512VL_ENABLE_NATIVE_ALIASES
53
+ #endif
54
+ SIMDE__BEGIN_DECLS
55
+
56
+ SIMDE__FUNCTION_ATTRIBUTES
57
+ simde__m128i
58
+ simde_mm_cvtsepi16_epi8 (simde__m128i a) {
59
+ #if defined(SIMDE_AVX512VL_NATIVE) && defined(SIMDE_AVX512BW_NATIVE)
60
+ return _mm_cvtsepi16_epi8(a);
61
+ #else
62
+ simde__m128i_private r_ = simde__m128i_to_private(simde_mm_setzero_si128());;
63
+ simde__m128i_private a_ = simde__m128i_to_private(a);
64
+
65
+ SIMDE__VECTORIZE
66
+ for (size_t i = 0 ; i < (sizeof(a_.i16) / sizeof(a_.i16[0])) ; i++) {
67
+ r_.i8[i] =
68
+ (a_.i16[i] < INT8_MIN)
69
+ ? (INT8_MIN)
70
+ : ((a_.i16[i] > INT8_MAX)
71
+ ? (INT8_MAX)
72
+ : HEDLEY_STATIC_CAST(int8_t, a_.i16[i]));
73
+ }
74
+
75
+ return simde__m128i_from_private(r_);
76
+ #endif
77
+ }
78
+ #if defined(SIMDE_AVX512VL_ENABLE_NATIVE_ALIASES)
79
+ #define _mm_cvtsepi16_epi8(a) simde_mm_cvtsepi16_epi8(a)
80
+ #endif
81
+
82
+ SIMDE__FUNCTION_ATTRIBUTES
83
+ simde__m128i
84
+ simde_mm256_cvtsepi16_epi8 (simde__m256i a) {
85
+ #if defined(SIMDE_AVX512VL_NATIVE) && defined(SIMDE_AVX512BW_NATIVE)
86
+ return _mm256_cvtsepi16_epi8(a);
87
+ #else
88
+ simde__m128i_private r_;
89
+ simde__m256i_private a_ = simde__m256i_to_private(a);
90
+
91
+ SIMDE__VECTORIZE
92
+ for (size_t i = 0 ; i < (sizeof(r_.i8) / sizeof(r_.i8[0])) ; i++) {
93
+ r_.i8[i] =
94
+ (a_.i16[i] < INT8_MIN)
95
+ ? (INT8_MIN)
96
+ : ((a_.i16[i] > INT8_MAX)
97
+ ? (INT8_MAX)
98
+ : HEDLEY_STATIC_CAST(int8_t, a_.i16[i]));
99
+ }
100
+
101
+ return simde__m128i_from_private(r_);
102
+ #endif
103
+ }
104
+ #if defined(SIMDE_AVX512VL_ENABLE_NATIVE_ALIASES)
105
+ #define _mm256_cvtsepi16_epi8(a) simde_mm256_cvtsepi16_epi8(a)
106
+ #endif
107
+
108
+ SIMDE__END_DECLS
109
+
110
+ HEDLEY_DIAGNOSTIC_POP
111
+
112
+ #endif /* !defined(SIMDE__AVX512VL_H) */