miga-base 0.7.16.8 → 0.7.16.10
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/bin/miga +2 -0
- data/lib/miga/cli/action/daemon.rb +1 -0
- data/lib/miga/remote_dataset.rb +6 -4
- data/lib/miga/version.rb +2 -2
- metadata +2 -2
checksums.yaml
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
---
|
|
2
2
|
SHA256:
|
|
3
|
-
metadata.gz:
|
|
4
|
-
data.tar.gz:
|
|
3
|
+
metadata.gz: 80bc5ff58583017ef3cb4962c7a2ac4086e602fc9bd2319a35cf7edd36c211d3
|
|
4
|
+
data.tar.gz: 6ae15844eff00f4adcf794f7b56f940cc4af96a555785a1397dfd3781e62af80
|
|
5
5
|
SHA512:
|
|
6
|
-
metadata.gz:
|
|
7
|
-
data.tar.gz:
|
|
6
|
+
metadata.gz: bfb11a9ffe5a5b8d64578512cf5ed29a6272f90760015092a35d2e17a008cd84bdf0c2c30f6988941815b196e4c492abf7b5929166b2ef6357297e3784a91936
|
|
7
|
+
data.tar.gz: 77846f20c76d8ba84b3c1351395da6cc410e8947bb82491d9e93c7f1a1931c22ec975eb5ffc94117524cddf83c30890ea84bbabe7585783aa2034274093c7e88
|
data/bin/miga
CHANGED
|
@@ -73,6 +73,7 @@ class MiGA::Cli::Action::Daemon < MiGA::Cli::Action
|
|
|
73
73
|
end
|
|
74
74
|
|
|
75
75
|
def perform
|
|
76
|
+
cli.operation or raise 'Please specify a daemon operation'
|
|
76
77
|
p = cli.load_project
|
|
77
78
|
d = MiGA::Daemon.new(p, cli[:json])
|
|
78
79
|
dopts = %i[latency maxjobs nodelist ppn shutdown_when_done]
|
data/lib/miga/remote_dataset.rb
CHANGED
|
@@ -156,10 +156,12 @@ class MiGA::RemoteDataset < MiGA::MiGA
|
|
|
156
156
|
return nil unless metadata[:ncbi_asm]
|
|
157
157
|
|
|
158
158
|
ncbi_asm_id = self.class.ncbi_asm_acc2id metadata[:ncbi_asm]
|
|
159
|
-
|
|
160
|
-
|
|
161
|
-
|
|
162
|
-
|
|
159
|
+
txt = nil
|
|
160
|
+
3.times do
|
|
161
|
+
txt = self.class.download(:ncbi_summary, :assembly, ncbi_asm_id, :json)
|
|
162
|
+
txt.empty? ? sleep(1) : break
|
|
163
|
+
end
|
|
164
|
+
doc = MiGA::Json.parse(txt, symbolize: false, contents: true)
|
|
163
165
|
@_ncbi_asm_json_doc = doc['result'][ doc['result']['uids'].first ]
|
|
164
166
|
end
|
|
165
167
|
|
data/lib/miga/version.rb
CHANGED
|
@@ -8,7 +8,7 @@ module MiGA
|
|
|
8
8
|
# - Float representing the major.minor version.
|
|
9
9
|
# - Integer representing gem releases of the current version.
|
|
10
10
|
# - Integer representing minor changes that require new version number.
|
|
11
|
-
VERSION = [0.7, 16,
|
|
11
|
+
VERSION = [0.7, 16, 10]
|
|
12
12
|
|
|
13
13
|
##
|
|
14
14
|
# Nickname for the current major.minor version.
|
|
@@ -16,7 +16,7 @@ module MiGA
|
|
|
16
16
|
|
|
17
17
|
##
|
|
18
18
|
# Date of the current gem release.
|
|
19
|
-
VERSION_DATE = Date.new(2020,
|
|
19
|
+
VERSION_DATE = Date.new(2020, 12, 9)
|
|
20
20
|
|
|
21
21
|
##
|
|
22
22
|
# Reference of MiGA.
|
metadata
CHANGED
|
@@ -1,14 +1,14 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: miga-base
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 0.7.16.
|
|
4
|
+
version: 0.7.16.10
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- Luis M. Rodriguez-R
|
|
8
8
|
autorequire:
|
|
9
9
|
bindir: bin
|
|
10
10
|
cert_chain: []
|
|
11
|
-
date: 2020-
|
|
11
|
+
date: 2020-12-09 00:00:00.000000000 Z
|
|
12
12
|
dependencies:
|
|
13
13
|
- !ruby/object:Gem::Dependency
|
|
14
14
|
name: daemons
|