miga-base 0.7.16.8 → 0.7.16.10
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- checksums.yaml +4 -4
- data/bin/miga +2 -0
- data/lib/miga/cli/action/daemon.rb +1 -0
- data/lib/miga/remote_dataset.rb +6 -4
- data/lib/miga/version.rb +2 -2
- metadata +2 -2
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
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---
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2
2
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
|
3
|
+
metadata.gz: 80bc5ff58583017ef3cb4962c7a2ac4086e602fc9bd2319a35cf7edd36c211d3
|
4
|
+
data.tar.gz: 6ae15844eff00f4adcf794f7b56f940cc4af96a555785a1397dfd3781e62af80
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5
5
|
SHA512:
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6
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-
metadata.gz:
|
7
|
-
data.tar.gz:
|
6
|
+
metadata.gz: bfb11a9ffe5a5b8d64578512cf5ed29a6272f90760015092a35d2e17a008cd84bdf0c2c30f6988941815b196e4c492abf7b5929166b2ef6357297e3784a91936
|
7
|
+
data.tar.gz: 77846f20c76d8ba84b3c1351395da6cc410e8947bb82491d9e93c7f1a1931c22ec975eb5ffc94117524cddf83c30890ea84bbabe7585783aa2034274093c7e88
|
data/bin/miga
CHANGED
@@ -73,6 +73,7 @@ class MiGA::Cli::Action::Daemon < MiGA::Cli::Action
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73
73
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end
|
74
74
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|
75
75
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def perform
|
76
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+
cli.operation or raise 'Please specify a daemon operation'
|
76
77
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p = cli.load_project
|
77
78
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d = MiGA::Daemon.new(p, cli[:json])
|
78
79
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dopts = %i[latency maxjobs nodelist ppn shutdown_when_done]
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data/lib/miga/remote_dataset.rb
CHANGED
@@ -156,10 +156,12 @@ class MiGA::RemoteDataset < MiGA::MiGA
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156
156
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return nil unless metadata[:ncbi_asm]
|
157
157
|
|
158
158
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ncbi_asm_id = self.class.ncbi_asm_acc2id metadata[:ncbi_asm]
|
159
|
-
|
160
|
-
|
161
|
-
|
162
|
-
|
159
|
+
txt = nil
|
160
|
+
3.times do
|
161
|
+
txt = self.class.download(:ncbi_summary, :assembly, ncbi_asm_id, :json)
|
162
|
+
txt.empty? ? sleep(1) : break
|
163
|
+
end
|
164
|
+
doc = MiGA::Json.parse(txt, symbolize: false, contents: true)
|
163
165
|
@_ncbi_asm_json_doc = doc['result'][ doc['result']['uids'].first ]
|
164
166
|
end
|
165
167
|
|
data/lib/miga/version.rb
CHANGED
@@ -8,7 +8,7 @@ module MiGA
|
|
8
8
|
# - Float representing the major.minor version.
|
9
9
|
# - Integer representing gem releases of the current version.
|
10
10
|
# - Integer representing minor changes that require new version number.
|
11
|
-
VERSION = [0.7, 16,
|
11
|
+
VERSION = [0.7, 16, 10]
|
12
12
|
|
13
13
|
##
|
14
14
|
# Nickname for the current major.minor version.
|
@@ -16,7 +16,7 @@ module MiGA
|
|
16
16
|
|
17
17
|
##
|
18
18
|
# Date of the current gem release.
|
19
|
-
VERSION_DATE = Date.new(2020,
|
19
|
+
VERSION_DATE = Date.new(2020, 12, 9)
|
20
20
|
|
21
21
|
##
|
22
22
|
# Reference of MiGA.
|
metadata
CHANGED
@@ -1,14 +1,14 @@
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|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: miga-base
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.7.16.
|
4
|
+
version: 0.7.16.10
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Luis M. Rodriguez-R
|
8
8
|
autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date: 2020-
|
11
|
+
date: 2020-12-09 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: daemons
|