miga-base 0.7.16.8 → 0.7.16.10

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: ede9e4d8b2ae673b55e0b28f9e78292c42791c4ad400a02ef2c9f60065c1fc26
-  data.tar.gz: ff42e5a4f220774b7863f528fd334fa73a1acca0afcbb1a7f5e32dedd15bd1c7
+  metadata.gz: 80bc5ff58583017ef3cb4962c7a2ac4086e602fc9bd2319a35cf7edd36c211d3
+  data.tar.gz: 6ae15844eff00f4adcf794f7b56f940cc4af96a555785a1397dfd3781e62af80
 SHA512:
-  metadata.gz: d02bc826d5dee9c84705d2f0fb30e1902cb5014385efe350fa2593347cd74f10007475cd3b5610a92fa9a93cf00378c508af7bcd36fb6ed3e60faad96b35eb49
-  data.tar.gz: c094b4bb67eddc15345cf53866b03154a85b39de09c10d8ba025a1c2411fb84c74d19f81f859b9004ecd6c9417a4ce9d3fd1cb07da24cb92de2164537faf8cb6
+  metadata.gz: bfb11a9ffe5a5b8d64578512cf5ed29a6272f90760015092a35d2e17a008cd84bdf0c2c30f6988941815b196e4c492abf7b5929166b2ef6357297e3784a91936
+  data.tar.gz: 77846f20c76d8ba84b3c1351395da6cc410e8947bb82491d9e93c7f1a1931c22ec975eb5ffc94117524cddf83c30890ea84bbabe7585783aa2034274093c7e88

data/bin/miga

@@ -4,6 +4,8 @@
 # @license Artistic-2.0
 
 $LOAD_PATH.push File.expand_path('../../lib', __FILE__)
+$LOAD_PATH.push File.expand_path('../../lib', File.realpath(__FILE__))
+
 require 'miga'
 require 'miga/cli'
 

data/lib/miga/cli/action/daemon.rb

@@ -73,6 +73,7 @@ class MiGA::Cli::Action::Daemon < MiGA::Cli::Action
   end
 
   def perform
+    cli.operation or raise 'Please specify a daemon operation'
     p = cli.load_project
     d = MiGA::Daemon.new(p, cli[:json])
     dopts = %i[latency maxjobs nodelist ppn shutdown_when_done]

data/lib/miga/remote_dataset.rb

@@ -156,10 +156,12 @@ class MiGA::RemoteDataset < MiGA::MiGA
     return nil unless metadata[:ncbi_asm]
 
     ncbi_asm_id = self.class.ncbi_asm_acc2id metadata[:ncbi_asm]
-    doc = MiGA::Json.parse(
-      self.class.download(:ncbi_summary, :assembly, ncbi_asm_id, :json),
-      symbolize: false, contents: true
-    )
+    txt = nil
+    3.times do
+      txt = self.class.download(:ncbi_summary, :assembly, ncbi_asm_id, :json)
+      txt.empty? ? sleep(1) : break
+    end
+    doc = MiGA::Json.parse(txt, symbolize: false, contents: true)
     @_ncbi_asm_json_doc = doc['result'][ doc['result']['uids'].first ]
   end
 

data/lib/miga/version.rb

@@ -8,7 +8,7 @@ module MiGA
   # - Float representing the major.minor version.
   # - Integer representing gem releases of the current version.
   # - Integer representing minor changes that require new version number.
-  VERSION = [0.7, 16, 8]
+  VERSION = [0.7, 16, 10]
 
   ##
   # Nickname for the current major.minor version.
@@ -16,7 +16,7 @@ module MiGA
 
   ##
   # Date of the current gem release.
-  VERSION_DATE = Date.new(2020, 11, 22)
+  VERSION_DATE = Date.new(2020, 12, 9)
 
   ##
   # Reference of MiGA.

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: miga-base
 version: !ruby/object:Gem::Version
-  version: 0.7.16.8
+  version: 0.7.16.10
 platform: ruby
 authors:
 - Luis M. Rodriguez-R
 autorequire:
 bindir: bin
 cert_chain: []
-date: 2020-11-22 00:00:00.000000000 Z
+date: 2020-12-09 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: daemons