miga-base 1.3.9.3 → 1.3.9.5
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/miga/remote_dataset/download.rb +5 -4
- data/lib/miga/version.rb +1 -1
- metadata +5 -5
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: b2f7ce1299d3d30cc002c12d05cbb80ecd0ed3e542ea741a97ea6586050507bb
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4
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+
data.tar.gz: 264c50bd0ce1c8e63aacc9bcf77fd5c3965b0640cfe5e666c7fe669b50c3e7c1
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5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: fabf0a936099b9f80ccd1e15babac2ab2c809173af73aa3f13a95df998a79ddd763d5e57161545d519e36f41d84b0aa3645198d6282139d473391189e3e31a48
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7
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+
data.tar.gz: 6bf137db6a855c719aa8597bed4eabfc9beab7432482d9623dddc0024197241b8e2f5ae9c0653325e12450b8dc8477f43851cb70807c0d1e1aa4f98291075b09
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@@ -65,8 +65,8 @@ class MiGA::RemoteDataset
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:ncbi_datasets_download, :genome, opts[:ids],
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66
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:zip, nil, opts[:extra], opts[:obj]
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)
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68
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-
zip_tmp = Tempfile.new('asm.zip')
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69
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-
zip_tmp.
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68
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+
zip_tmp = Tempfile.new(['asm', '.zip'], encoding: zipped.encoding.to_s)
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69
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zip_tmp.print(zipped)
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zip_tmp.close
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o = ''
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@@ -76,14 +76,15 @@ class MiGA::RemoteDataset
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if entry.file? && entry.name =~ /_genomic\.fna$/
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DEBUG "Extracting: #{entry.name}"
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entry.get_input_stream do |ifh|
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79
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-
cont = ifh.read
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-
ofh&.
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cont = MiGA::MiGA.normalize_encoding(ifh.read).chomp + "\n"
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ofh&.print(cont)
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o += cont
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end
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end
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end
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end
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ofh&.close
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87
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+
File.unlink(zip_tmp.path)
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o
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end
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data/lib/miga/version.rb
CHANGED
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@@ -12,7 +12,7 @@ module MiGA
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# - String indicating release status:
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# - rc* release candidate, not released as gem
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# - [0-9]+ stable release, released as gem
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15
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-
VERSION = [1.3, 9,
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+
VERSION = [1.3, 9, 5].freeze
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##
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# Nickname for the current major.minor version.
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metadata
CHANGED
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@@ -1,7 +1,7 @@
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1
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--- !ruby/object:Gem::Specification
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name: miga-base
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version: !ruby/object:Gem::Version
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-
version: 1.3.9.
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version: 1.3.9.5
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platform: ruby
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authors:
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- Luis M. Rodriguez-R
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@@ -84,16 +84,16 @@ dependencies:
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name: rubyzip
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requirement: !ruby/object:Gem::Requirement
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requirements:
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-
- - "
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+
- - "~>"
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- !ruby/object:Gem::Version
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version: '
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version: '2.3'
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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-
- - "
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- - "~>"
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- !ruby/object:Gem::Version
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version: '
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version: '2.3'
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- !ruby/object:Gem::Dependency
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name: rake
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requirement: !ruby/object:Gem::Requirement
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