miga-base 1.3.9.3 → 1.3.9.5
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- checksums.yaml +4 -4
- data/lib/miga/remote_dataset/download.rb +5 -4
- data/lib/miga/version.rb +1 -1
- metadata +5 -5
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
|
|
|
1
1
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---
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|
2
2
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SHA256:
|
|
3
|
-
metadata.gz:
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|
4
|
-
data.tar.gz:
|
|
3
|
+
metadata.gz: b2f7ce1299d3d30cc002c12d05cbb80ecd0ed3e542ea741a97ea6586050507bb
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4
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+
data.tar.gz: 264c50bd0ce1c8e63aacc9bcf77fd5c3965b0640cfe5e666c7fe669b50c3e7c1
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|
5
5
|
SHA512:
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|
6
|
-
metadata.gz:
|
|
7
|
-
data.tar.gz:
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|
6
|
+
metadata.gz: fabf0a936099b9f80ccd1e15babac2ab2c809173af73aa3f13a95df998a79ddd763d5e57161545d519e36f41d84b0aa3645198d6282139d473391189e3e31a48
|
|
7
|
+
data.tar.gz: 6bf137db6a855c719aa8597bed4eabfc9beab7432482d9623dddc0024197241b8e2f5ae9c0653325e12450b8dc8477f43851cb70807c0d1e1aa4f98291075b09
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@@ -65,8 +65,8 @@ class MiGA::RemoteDataset
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|
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65
65
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:ncbi_datasets_download, :genome, opts[:ids],
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|
66
66
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:zip, nil, opts[:extra], opts[:obj]
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|
67
67
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)
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|
68
|
-
zip_tmp = Tempfile.new('asm.zip')
|
|
69
|
-
zip_tmp.
|
|
68
|
+
zip_tmp = Tempfile.new(['asm', '.zip'], encoding: zipped.encoding.to_s)
|
|
69
|
+
zip_tmp.print(zipped)
|
|
70
70
|
zip_tmp.close
|
|
71
71
|
|
|
72
72
|
o = ''
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@@ -76,14 +76,15 @@ class MiGA::RemoteDataset
|
|
|
76
76
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if entry.file? && entry.name =~ /_genomic\.fna$/
|
|
77
77
|
DEBUG "Extracting: #{entry.name}"
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|
78
78
|
entry.get_input_stream do |ifh|
|
|
79
|
-
cont = ifh.read
|
|
80
|
-
ofh&.
|
|
79
|
+
cont = MiGA::MiGA.normalize_encoding(ifh.read).chomp + "\n"
|
|
80
|
+
ofh&.print(cont)
|
|
81
81
|
o += cont
|
|
82
82
|
end
|
|
83
83
|
end
|
|
84
84
|
end
|
|
85
85
|
end
|
|
86
86
|
ofh&.close
|
|
87
|
+
File.unlink(zip_tmp.path)
|
|
87
88
|
o
|
|
88
89
|
end
|
|
89
90
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|
data/lib/miga/version.rb
CHANGED
|
@@ -12,7 +12,7 @@ module MiGA
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|
|
12
12
|
# - String indicating release status:
|
|
13
13
|
# - rc* release candidate, not released as gem
|
|
14
14
|
# - [0-9]+ stable release, released as gem
|
|
15
|
-
VERSION = [1.3, 9,
|
|
15
|
+
VERSION = [1.3, 9, 5].freeze
|
|
16
16
|
|
|
17
17
|
##
|
|
18
18
|
# Nickname for the current major.minor version.
|
metadata
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: miga-base
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 1.3.9.
|
|
4
|
+
version: 1.3.9.5
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- Luis M. Rodriguez-R
|
|
@@ -84,16 +84,16 @@ dependencies:
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|
|
84
84
|
name: rubyzip
|
|
85
85
|
requirement: !ruby/object:Gem::Requirement
|
|
86
86
|
requirements:
|
|
87
|
-
- - "
|
|
87
|
+
- - "~>"
|
|
88
88
|
- !ruby/object:Gem::Version
|
|
89
|
-
version: '
|
|
89
|
+
version: '2.3'
|
|
90
90
|
type: :runtime
|
|
91
91
|
prerelease: false
|
|
92
92
|
version_requirements: !ruby/object:Gem::Requirement
|
|
93
93
|
requirements:
|
|
94
|
-
- - "
|
|
94
|
+
- - "~>"
|
|
95
95
|
- !ruby/object:Gem::Version
|
|
96
|
-
version: '
|
|
96
|
+
version: '2.3'
|
|
97
97
|
- !ruby/object:Gem::Dependency
|
|
98
98
|
name: rake
|
|
99
99
|
requirement: !ruby/object:Gem::Requirement
|