markdownplus-julia 0.0.1

checksums.yaml

@@ -0,0 +1,7 @@
+---
+SHA1:
+  metadata.gz: 7c108c74523824f8d65f51af08864383dd545702
+  data.tar.gz: 86340a3f0c7779f87660c3172eecd4d2f6e1ab40
+SHA512:
+  metadata.gz: 6cee6cbd0f362cae38a4c19443f233ce2883676a352248112c537c2bb7e7d8835cf4d32571b05eb364df74fa766749a297483b84d8bcea2fb7c05a22257dcb0a
+  data.tar.gz: 69e5eacc252bab3c0521eb05735194fe5610a49c87e1d44a4a3d99f2558732d9956a355983dd8b31defecc482366ba58f5b5d5195e59a8f05628b40e8901b9f1

data/.gitignore

@@ -0,0 +1,17 @@
+*.gem
+*.rbc
+.bundle
+.config
+.yardoc
+Gemfile.lock
+InstalledFiles
+_yardoc
+coverage
+doc/
+lib/bundler/man
+pkg
+rdoc
+spec/reports
+test/tmp
+test/version_tmp
+tmp

data/Gemfile

@@ -0,0 +1,4 @@
+source 'https://rubygems.org'
+
+# Specify your gem's dependencies in markdownplus-julia.gemspec
+gemspec

data/LICENSE.txt

@@ -0,0 +1,22 @@
+Copyright (c) 2015 Christopher Petersen
+
+MIT License
+
+Permission is hereby granted, free of charge, to any person obtaining
+a copy of this software and associated documentation files (the
+"Software"), to deal in the Software without restriction, including
+without limitation the rights to use, copy, modify, merge, publish,
+distribute, sublicense, and/or sell copies of the Software, and to
+permit persons to whom the Software is furnished to do so, subject to
+the following conditions:
+
+The above copyright notice and this permission notice shall be
+included in all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
+LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
+OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
+WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

data/README.md

@@ -0,0 +1,42 @@
+# Markdownplus::Julia
+
+Julia plugin for [Markdownplus](https://github.com/cpetersen/markdownplus)
+
+## Installation
+
+Add this line to your application's Gemfile:
+
+    gem 'markdownplus-julia'
+
+And then execute:
+
+    $ bundle
+
+Or install it yourself as:
+
+    $ gem install markdownplus-julia
+
+### Note
+
+This gem requires `julia` be accessable from the `$PATH`.
+
+## Usage
+
+The following will pull the data from `my_data_variable` and put it into a data frame which will be accessible from julia by the name `my_julia_variable`. It then creates a graph using [Gadfly](https://github.com/dcjones/Gadfly.jl) and outputs an SVG directly into the rendered HTML.
+
+```
+  ```julia(dataFrame('my_julia_variable',get('my_data_variable'))),strip_whitespace(),raw()
+  using Gadfly
+  myplot = plot(x=1:10, y=2.^rand(10),
+       Scale.y_sqrt, Geom.point, Geom.smooth,
+       Guide.xlabel("Stimulus"), Guide.ylabel("Response"), Guide.title("Dog Training"))
+  draw(SVGJS(STDOUT, 4inch, 3inch), myplot)
+```
+
+## Contributing
+
+1. Fork it
+2. Create your feature branch (`git checkout -b my-new-feature`)
+3. Commit your changes (`git commit -am 'Add some feature'`)
+4. Push to the branch (`git push origin my-new-feature`)
+5. Create new Pull Request

data/Rakefile

@@ -0,0 +1 @@
+require "bundler/gem_tasks"

data/lib/markdownplus/julia/version.rb

@@ -0,0 +1,5 @@
+module Markdownplus
+  module Julia
+    VERSION = "0.0.1"
+  end
+end

data/lib/markdownplus/julia.rb

@@ -0,0 +1,64 @@
+require "markdownplus/julia/version"
+require "tempfile"
+
+module Markdownplus
+  module Julia
+    class JuliaHandler < Handler
+      def execute(input, parameters, variables, warnings, errors)
+        output = nil
+        file = Tempfile.new(['julia-script','.jl'])
+        begin
+          parameters.each_with_index do |param,i|
+            if param.respond_to?(:to_julia)
+              file.write(param.to_julia)
+            else
+              warnings << "Parameter [#{i}] does not respond to to_julia"
+            end
+          end
+          file.write(input)
+          file.close
+          puts File.read(file.path)
+          output = `julia #{file.path}`
+          output.gsub!(/\n\s+/,"\n")
+        ensure
+          # file.unlink
+        end
+        output
+      end
+    end
+    HandlerRegistry.register("julia", JuliaHandler)
+
+    class DataFrameHandler < Handler
+      class DataFrame
+        attr_reader :name
+        attr_reader :csv
+
+        def initialize(name, csv)
+          @name = name
+          @csv = csv
+        end
+
+        def to_julia
+          file = Tempfile.new(['data','.csv'])
+          file.write(csv)
+          file.close
+          output = "#{name} = readcsv(\"#{file.path}\")\n"
+        end
+      end
+
+      def execute(input, parameters, variables, warnings, errors)
+        name = nil
+        csv = nil
+        if parameters==nil || parameters.count < 2
+          errors << "Two parameters are required"
+        else
+          warnings << "More than two variables given" if parameters.count > 2
+          name = parameters[0].to_s
+          csv = parameters[1].to_s
+        end
+        DataFrame.new(name, csv)
+      end
+    end
+    HandlerRegistry.register("dataFrame", DataFrameHandler)
+  end
+end

data/markdownplus-sql.gemspec

@@ -0,0 +1,25 @@
+# coding: utf-8
+lib = File.expand_path('../lib', __FILE__)
+$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
+require 'markdownplus/julia/version'
+
+Gem::Specification.new do |spec|
+  spec.name          = "markdownplus-julia"
+  spec.version       = Markdownplus::Julia::VERSION
+  spec.authors       = ["Christopher Petersen"]
+  spec.email         = ["chris@petersen.io"]
+  spec.description   = %q{Julia plugin for Markdownplus}
+  spec.summary       = %q{Adds the ability to execute arbitrary Julia code and bring the results back into Markdownplus}
+  spec.homepage      = ""
+  spec.license       = "MIT"
+
+  spec.files         = `git ls-files`.split($/)
+  spec.executables   = spec.files.grep(%r{^bin/}) { |f| File.basename(f) }
+  spec.test_files    = spec.files.grep(%r{^(test|spec|features)/})
+  spec.require_paths = ["lib"]
+
+  spec.add_development_dependency "bundler", "~> 1.3"
+  spec.add_development_dependency "rake"
+
+  spec.add_dependency "sequel"
+end

metadata

@@ -0,0 +1,96 @@
+--- !ruby/object:Gem::Specification
+name: markdownplus-julia
+version: !ruby/object:Gem::Version
+  version: 0.0.1
+platform: ruby
+authors:
+- Christopher Petersen
+autorequire: 
+bindir: bin
+cert_chain: []
+date: 2015-05-05 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: bundler
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '1.3'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '1.3'
+- !ruby/object:Gem::Dependency
+  name: rake
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: sequel
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+description: Julia plugin for Markdownplus
+email:
+- chris@petersen.io
+executables: []
+extensions: []
+extra_rdoc_files: []
+files:
+- .gitignore
+- Gemfile
+- LICENSE.txt
+- README.md
+- Rakefile
+- lib/markdownplus/julia.rb
+- lib/markdownplus/julia/version.rb
+- markdownplus-sql.gemspec
+homepage: ''
+licenses:
+- MIT
+metadata: {}
+post_install_message: 
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - '>='
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - '>='
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubyforge_project: 
+rubygems_version: 2.4.2
+signing_key: 
+specification_version: 4
+summary: Adds the ability to execute arbitrary Julia code and bring the results back
+  into Markdownplus
+test_files: []
+has_rdoc: