libsvmloader 0.1.0

checksums.yaml

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+---
+SHA1:
+  metadata.gz: 99f74e014a9ef351e39d93497123ae40566c9b66
+  data.tar.gz: 719a741d997fe138dd7f5648fbb2280a707e0f67
+SHA512:
+  metadata.gz: 4d83f15beda1f7e6ff7a55158c674484835046004eb44feeacb9eb6117d34b0f7b240a148ae3ab0948d75f6f2697344a79b332458a6b8f4bc9d24da418395299
+  data.tar.gz: 7bb5e7d6e5219435280085f08c012dff69972a617d14232143b1500ac56628a6dcb89dedcd7349b89556c9cc1e85f732fa65168385941fff043b27fae3f46365

data/.gitignore

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+/.bundle/
+/.yardoc
+/Gemfile.lock
+/_yardoc/
+/coverage/
+/doc/
+/pkg/
+/spec/reports/
+/tmp/
+
+# rspec failure tracking
+.rspec_status

data/.rspec

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+--format documentation
+--color

data/.travis.yml

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+sudo: false
+language: ruby
+rvm:
+  - 2.4.1
+before_install: gem install bundler -v 1.15.3

data/CODE_OF_CONDUCT.md

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+# Contributor Covenant Code of Conduct
+
+## Our Pledge
+
+In the interest of fostering an open and welcoming environment, we as
+contributors and maintainers pledge to making participation in our project and
+our community a harassment-free experience for everyone, regardless of age, body
+size, disability, ethnicity, gender identity and expression, level of experience,
+nationality, personal appearance, race, religion, or sexual identity and
+orientation.
+
+## Our Standards
+
+Examples of behavior that contributes to creating a positive environment
+include:
+
+* Using welcoming and inclusive language
+* Being respectful of differing viewpoints and experiences
+* Gracefully accepting constructive criticism
+* Focusing on what is best for the community
+* Showing empathy towards other community members
+
+Examples of unacceptable behavior by participants include:
+
+* The use of sexualized language or imagery and unwelcome sexual attention or
+advances
+* Trolling, insulting/derogatory comments, and personal or political attacks
+* Public or private harassment
+* Publishing others' private information, such as a physical or electronic
+  address, without explicit permission
+* Other conduct which could reasonably be considered inappropriate in a
+  professional setting
+
+## Our Responsibilities
+
+Project maintainers are responsible for clarifying the standards of acceptable
+behavior and are expected to take appropriate and fair corrective action in
+response to any instances of unacceptable behavior.
+
+Project maintainers have the right and responsibility to remove, edit, or
+reject comments, commits, code, wiki edits, issues, and other contributions
+that are not aligned to this Code of Conduct, or to ban temporarily or
+permanently any contributor for other behaviors that they deem inappropriate,
+threatening, offensive, or harmful.
+
+## Scope
+
+This Code of Conduct applies both within project spaces and in public spaces
+when an individual is representing the project or its community. Examples of
+representing a project or community include using an official project e-mail
+address, posting via an official social media account, or acting as an appointed
+representative at an online or offline event. Representation of a project may be
+further defined and clarified by project maintainers.
+
+## Enforcement
+
+Instances of abusive, harassing, or otherwise unacceptable behavior may be
+reported by contacting the project team at yoshoku@outlook.com. All
+complaints will be reviewed and investigated and will result in a response that
+is deemed necessary and appropriate to the circumstances. The project team is
+obligated to maintain confidentiality with regard to the reporter of an incident.
+Further details of specific enforcement policies may be posted separately.
+
+Project maintainers who do not follow or enforce the Code of Conduct in good
+faith may face temporary or permanent repercussions as determined by other
+members of the project's leadership.
+
+## Attribution
+
+This Code of Conduct is adapted from the [Contributor Covenant][homepage], version 1.4,
+available at [http://contributor-covenant.org/version/1/4][version]
+
+[homepage]: http://contributor-covenant.org
+[version]: http://contributor-covenant.org/version/1/4/

data/Gemfile

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+source "https://rubygems.org"
+
+git_source(:github) {|repo_name| "https://github.com/#{repo_name}" }
+
+# Specify your gem's dependencies in libsvmloader.gemspec
+gemspec

data/LICENSE.txt

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+The MIT License (MIT)
+
+Copyright (c) 2017 yoshoku
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.

data/README.md

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+# LibSVMLoader
+
+LibSVMLoader loads (and dumps) dataset file with the libsvm file format.
+
+## Installation
+
+Add this line to your application's Gemfile:
+
+```ruby
+gem 'libsvmloader'
+```
+
+And then execute:
+
+    $ bundle
+
+Or install it yourself as:
+
+    $ gem install libsvmloader
+
+## Usage
+
+```ruby
+require 'libsvmloader'
+
+# for classification task
+samples, labels = LibSVMLoader.load_libsvm_file('foo.t')
+LibSVMLoader.dump_libsvm_file(samples, labels, 'bar.t')
+
+# for regression task
+samples, target_variables = LibSVMLoader.load_libsvm_file('foo.t', label_dtype: :float64)
+LibSVMLoader.dump_libsvm_file(samples, target_variables, 'bar.t')
+```
+
+## Development
+
+After checking out the repo, run `bin/setup` to install dependencies. Then, run `rake spec` to run the tests. You can also run `bin/console` for an interactive prompt that will allow you to experiment.
+
+To install this gem onto your local machine, run `bundle exec rake install`. To release a new version, update the version number in `version.rb`, and then run `bundle exec rake release`, which will create a git tag for the version, push git commits and tags, and push the `.gem` file to [rubygems.org](https://rubygems.org).
+
+## Contributing
+
+Bug reports and pull requests are welcome on GitHub at https://github.com/yoshoku/libsvmloader.
+
+## License
+
+The gem is available as open source under the terms of the [MIT License](http://opensource.org/licenses/MIT).

data/Rakefile

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+require "bundler/gem_tasks"
+require "rspec/core/rake_task"
+
+RSpec::Core::RakeTask.new(:spec)
+
+task :default => :spec

data/bin/console

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+#!/usr/bin/env ruby
+
+require "bundler/setup"
+require "libsvmloader"
+
+# You can add fixtures and/or initialization code here to make experimenting
+# with your gem easier. You can also use a different console, if you like.
+
+# (If you use this, don't forget to add pry to your Gemfile!)
+# require "pry"
+# Pry.start
+
+require "irb"
+IRB.start(__FILE__)

data/bin/setup

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+#!/usr/bin/env bash
+set -euo pipefail
+IFS=$'\n\t'
+set -vx
+
+bundle install
+
+# Do any other automated setup that you need to do here

data/exe/libsvmloader

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+#!/usr/bin/env ruby
+
+require "libsvmloader"

data/lib/libsvmloader.rb

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+
+require 'libsvmloader/version'
+require 'nmatrix/nmatrix'
+
+# LibSVMLoader loads (and dumps) dataset file with the libsvm file format.
+class LibSVMLoader
+  class << self
+    # Load a dataset with the libsvm file format into NMatrix.
+    #
+    # @param filename    [String]  A path to a dataset file.
+    # @param zero_based  [Boolean] Whether the column index starts from 0 (true) or 1 (false).
+    # @param stype       [Symbol]  The strorage type of the nmatrix consisting of feature vectors.
+    # @param label_dtype [Symbol]  The data type of the NMatrix consisting of labels or target values.
+    # @param value_dtype [Symbol]  The data type of the NMatrix consisting of feature vectors.
+    #
+    # @return [Array<NMatrix>]
+    #   Returns array containing the (n_samples x n_features) matrix for feature vectors
+    #   and (n_samples x 1) matrix for labels or target values.
+    def load_libsvm_file(filename, zero_based: false, stype: :yale,
+                         label_dtype: :int32, value_dtype: :float64)
+      ftvecs = []
+      labels = []
+      n_features = 0
+      File.open(filename, 'r') do |file|
+        file.each_line do |line|
+          label, ftvec, max_idx = parse_libsvm_line(line, zero_based)
+          labels.push(label)
+          ftvecs.push(ftvec)
+          n_features = [n_features, max_idx].max
+        end
+      end
+      [convert_to_nmatrix(ftvecs, n_features, value_dtype, stype),
+       NMatrix.new([labels.size, 1], labels, dtype: label_dtype)]
+    end
+
+    # Dump the dataset with the libsvm file format.
+    #
+    # @param data       [NMatrix] (n_samples x n_features) matrix consisting of feature vectors.
+    # @param labels     [NMatrix] (n_samples x 1) matrix consisting of labels or target values.
+    # @param filename   [String]  A path to the output libsvm file.
+    # @param zero_based [Boolean] Whether the column index starts from 0 (true) or 1 (false).
+    def dump_libsvm_file(data, labels, filename, zero_based: false)
+      n_samples = [data.rows, labels.rows].min
+      label_type = detect_dtype(labels)
+      value_type = detect_dtype(data)
+      File.open(filename, 'w') do |file|
+        n_samples.times do |n|
+          file.puts(dump_libsvm_line(labels[n], data.row(n),
+                                     label_type, value_type, zero_based))
+        end
+      end
+    end
+
+    protected
+
+    def parse_libsvm_line(line, zero_based)
+      tokens = line.split
+      label = tokens.shift.to_f
+      ftvec = tokens.map do |el|
+        idx, val = el.split(':')
+        idx = idx.to_i - (zero_based == false ? 1 : 0)
+        [idx, val.to_f]
+      end
+      max_idx = ftvec.map { |el| el[0] }.max
+      [label, ftvec, max_idx]
+    end
+
+    def convert_to_nmatrix(data, n_features, value_dtype, stype)
+      n_samples = data.size
+      mat = NMatrix.zeros([n_samples, n_features + 1],
+                          dtype: value_dtype, stype: stype)
+      data.each_with_index do |ftvec, n|
+        ftvec.each do |el|
+          mat[n, el[0]] = el[1]
+        end
+      end
+      mat
+    end
+
+    def detect_dtype(data)
+      type = '%s'
+      type = '%d' if %i[int8 int16 int32 int64].include?(data.dtype)
+      type = '%.10g' if %i[float32 float64].include?(data.dtype)
+      type
+    end
+
+    def dump_libsvm_line(label, ftvec, label_type, value_type, zero_based)
+      line = format(label_type.to_s, label)
+      ftvec.to_a.each_with_index do |val, n|
+        idx = n + (zero_based == false ? 1 : 0)
+        line += format(" %d:#{value_type}", idx, val) if val != 0.0
+      end
+      line
+    end
+  end
+end

data/lib/libsvmloader/version.rb

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+#module LibSVMLoader
+#  VERSION = "0.1.0"
+#end
+class LibSVMLoader
+  module VERSION
+    MAJOR = 0
+    MINOR = 1
+    TINY = 0
+    STRING = [MAJOR, MINOR, TINY].compact.join('.')
+  end
+end

data/libsvmloader.gemspec

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+# coding: utf-8
+lib = File.expand_path("../lib", __FILE__)
+$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
+require "libsvmloader/version"
+
+Gem::Specification.new do |spec|
+  spec.name          = "libsvmloader"
+  spec.version       = LibSVMLoader::VERSION::STRING
+  spec.authors       = ["yoshoku"]
+  spec.email         = ["yoshoku@outlook.com"]
+
+  spec.summary       = %q{LibSVMLoader loads (and dumps) dataset file with the libsvm file format.}
+  spec.homepage      = "https://github.com/yoshoku/libsvmloader"
+  spec.license       = "MIT"
+
+  spec.files         = `git ls-files -z`.split("\x0").reject do |f|
+    f.match(%r{^(test|spec|features)/})
+  end
+  spec.bindir        = "exe"
+  spec.executables   = spec.files.grep(%r{^exe/}) { |f| File.basename(f) }
+  spec.require_paths = ["lib"]
+
+  spec.add_development_dependency "bundler", "~> 1.15"
+  spec.add_development_dependency "rake", "~> 10.0"
+  spec.add_development_dependency "rspec", "~> 3.0"
+  spec.add_development_dependency "nmatrix", "~> 0.2.3"
+end

metadata

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+--- !ruby/object:Gem::Specification
+name: libsvmloader
+version: !ruby/object:Gem::Version
+  version: 0.1.0
+platform: ruby
+authors:
+- yoshoku
+autorequire: 
+bindir: exe
+cert_chain: []
+date: 2017-08-12 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: bundler
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.15'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.15'
+- !ruby/object:Gem::Dependency
+  name: rake
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '10.0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '10.0'
+- !ruby/object:Gem::Dependency
+  name: rspec
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '3.0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '3.0'
+- !ruby/object:Gem::Dependency
+  name: nmatrix
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 0.2.3
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 0.2.3
+description: 
+email:
+- yoshoku@outlook.com
+executables:
+- libsvmloader
+extensions: []
+extra_rdoc_files: []
+files:
+- ".gitignore"
+- ".rspec"
+- ".travis.yml"
+- CODE_OF_CONDUCT.md
+- Gemfile
+- LICENSE.txt
+- README.md
+- Rakefile
+- bin/console
+- bin/setup
+- exe/libsvmloader
+- lib/libsvmloader.rb
+- lib/libsvmloader/version.rb
+- libsvmloader.gemspec
+homepage: https://github.com/yoshoku/libsvmloader
+licenses:
+- MIT
+metadata: {}
+post_install_message: 
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubyforge_project: 
+rubygems_version: 2.6.11
+signing_key: 
+specification_version: 4
+summary: LibSVMLoader loads (and dumps) dataset file with the libsvm file format.
+test_files: []