libsvmloader 0.1.0

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+ /.bundle/
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+ /.yardoc
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+ /Gemfile.lock
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+ /_yardoc/
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+ /coverage/
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+ /doc/
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+ /pkg/
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+ /spec/reports/
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+ /tmp/
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+
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+ # rspec failure tracking
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+ .rspec_status
data/.rspec ADDED
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+ --format documentation
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+ --color
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+ sudo: false
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+ language: ruby
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+ rvm:
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+ - 2.4.1
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+ before_install: gem install bundler -v 1.15.3
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+ # Contributor Covenant Code of Conduct
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+
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+ ## Our Pledge
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+
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+ In the interest of fostering an open and welcoming environment, we as
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+ contributors and maintainers pledge to making participation in our project and
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+ our community a harassment-free experience for everyone, regardless of age, body
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+ size, disability, ethnicity, gender identity and expression, level of experience,
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+ nationality, personal appearance, race, religion, or sexual identity and
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+ orientation.
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+
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+ ## Our Standards
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+
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+ Examples of behavior that contributes to creating a positive environment
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+ include:
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+
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+ * Using welcoming and inclusive language
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+ * Being respectful of differing viewpoints and experiences
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+ * Gracefully accepting constructive criticism
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+ * Focusing on what is best for the community
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+ * Showing empathy towards other community members
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+
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+ Examples of unacceptable behavior by participants include:
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+
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+ * The use of sexualized language or imagery and unwelcome sexual attention or
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+ advances
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+ * Trolling, insulting/derogatory comments, and personal or political attacks
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+ * Public or private harassment
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+ * Publishing others' private information, such as a physical or electronic
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+ address, without explicit permission
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+ * Other conduct which could reasonably be considered inappropriate in a
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+ professional setting
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+
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+ ## Our Responsibilities
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+
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+ Project maintainers are responsible for clarifying the standards of acceptable
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+ behavior and are expected to take appropriate and fair corrective action in
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+ response to any instances of unacceptable behavior.
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+
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+ Project maintainers have the right and responsibility to remove, edit, or
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+ reject comments, commits, code, wiki edits, issues, and other contributions
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+ that are not aligned to this Code of Conduct, or to ban temporarily or
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+ permanently any contributor for other behaviors that they deem inappropriate,
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+ threatening, offensive, or harmful.
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+
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+ ## Scope
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+
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+ This Code of Conduct applies both within project spaces and in public spaces
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+ when an individual is representing the project or its community. Examples of
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+ representing a project or community include using an official project e-mail
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+ address, posting via an official social media account, or acting as an appointed
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+ representative at an online or offline event. Representation of a project may be
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+ further defined and clarified by project maintainers.
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+
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+ ## Enforcement
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+
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+ Instances of abusive, harassing, or otherwise unacceptable behavior may be
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+ reported by contacting the project team at yoshoku@outlook.com. All
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+ complaints will be reviewed and investigated and will result in a response that
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+ is deemed necessary and appropriate to the circumstances. The project team is
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+ obligated to maintain confidentiality with regard to the reporter of an incident.
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+ Further details of specific enforcement policies may be posted separately.
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+
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+ Project maintainers who do not follow or enforce the Code of Conduct in good
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+ faith may face temporary or permanent repercussions as determined by other
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+ members of the project's leadership.
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+
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+ ## Attribution
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+
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+ This Code of Conduct is adapted from the [Contributor Covenant][homepage], version 1.4,
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+ available at [http://contributor-covenant.org/version/1/4][version]
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+
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+ [homepage]: http://contributor-covenant.org
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+ [version]: http://contributor-covenant.org/version/1/4/
data/Gemfile ADDED
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+ source "https://rubygems.org"
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+
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+ git_source(:github) {|repo_name| "https://github.com/#{repo_name}" }
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+
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+ # Specify your gem's dependencies in libsvmloader.gemspec
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+ gemspec
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+ The MIT License (MIT)
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+
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+ Copyright (c) 2017 yoshoku
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+
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+ Permission is hereby granted, free of charge, to any person obtaining a copy
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+ of this software and associated documentation files (the "Software"), to deal
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+ in the Software without restriction, including without limitation the rights
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+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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+ copies of the Software, and to permit persons to whom the Software is
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+ furnished to do so, subject to the following conditions:
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+
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+ The above copyright notice and this permission notice shall be included in
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+ all copies or substantial portions of the Software.
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+
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+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
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+ THE SOFTWARE.
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+ # LibSVMLoader
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+
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+ LibSVMLoader loads (and dumps) dataset file with the libsvm file format.
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+
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+ ## Installation
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+
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+ Add this line to your application's Gemfile:
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+
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+ ```ruby
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+ gem 'libsvmloader'
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+ ```
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+
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+ And then execute:
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+
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+ $ bundle
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+
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+ Or install it yourself as:
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+
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+ $ gem install libsvmloader
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+
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+ ## Usage
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+
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+ ```ruby
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+ require 'libsvmloader'
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+
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+ # for classification task
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+ samples, labels = LibSVMLoader.load_libsvm_file('foo.t')
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+ LibSVMLoader.dump_libsvm_file(samples, labels, 'bar.t')
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+
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+ # for regression task
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+ samples, target_variables = LibSVMLoader.load_libsvm_file('foo.t', label_dtype: :float64)
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+ LibSVMLoader.dump_libsvm_file(samples, target_variables, 'bar.t')
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+ ```
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+
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+ ## Development
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+
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+ After checking out the repo, run `bin/setup` to install dependencies. Then, run `rake spec` to run the tests. You can also run `bin/console` for an interactive prompt that will allow you to experiment.
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+
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+ To install this gem onto your local machine, run `bundle exec rake install`. To release a new version, update the version number in `version.rb`, and then run `bundle exec rake release`, which will create a git tag for the version, push git commits and tags, and push the `.gem` file to [rubygems.org](https://rubygems.org).
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+
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+ ## Contributing
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+
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+ Bug reports and pull requests are welcome on GitHub at https://github.com/yoshoku/libsvmloader.
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+
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+ ## License
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+
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+ The gem is available as open source under the terms of the [MIT License](http://opensource.org/licenses/MIT).
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+ require "bundler/gem_tasks"
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+ require "rspec/core/rake_task"
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+
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+ RSpec::Core::RakeTask.new(:spec)
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+
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+ task :default => :spec
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+ #!/usr/bin/env ruby
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+
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+ require "bundler/setup"
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+ require "libsvmloader"
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+
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+ # You can add fixtures and/or initialization code here to make experimenting
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+ # with your gem easier. You can also use a different console, if you like.
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+
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+ # (If you use this, don't forget to add pry to your Gemfile!)
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+ # require "pry"
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+ # Pry.start
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+
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+ require "irb"
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+ IRB.start(__FILE__)
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+ #!/usr/bin/env bash
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+ set -euo pipefail
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+ IFS=$'\n\t'
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+ set -vx
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+
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+ bundle install
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+
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+ # Do any other automated setup that you need to do here
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+ #!/usr/bin/env ruby
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+
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+ require "libsvmloader"
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+
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+ require 'libsvmloader/version'
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+ require 'nmatrix/nmatrix'
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+
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+ # LibSVMLoader loads (and dumps) dataset file with the libsvm file format.
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+ class LibSVMLoader
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+ class << self
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+ # Load a dataset with the libsvm file format into NMatrix.
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+ #
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+ # @param filename [String] A path to a dataset file.
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+ # @param zero_based [Boolean] Whether the column index starts from 0 (true) or 1 (false).
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+ # @param stype [Symbol] The strorage type of the nmatrix consisting of feature vectors.
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+ # @param label_dtype [Symbol] The data type of the NMatrix consisting of labels or target values.
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+ # @param value_dtype [Symbol] The data type of the NMatrix consisting of feature vectors.
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+ #
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+ # @return [Array<NMatrix>]
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+ # Returns array containing the (n_samples x n_features) matrix for feature vectors
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+ # and (n_samples x 1) matrix for labels or target values.
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+ def load_libsvm_file(filename, zero_based: false, stype: :yale,
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+ label_dtype: :int32, value_dtype: :float64)
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+ ftvecs = []
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+ labels = []
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+ n_features = 0
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+ File.open(filename, 'r') do |file|
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+ file.each_line do |line|
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+ label, ftvec, max_idx = parse_libsvm_line(line, zero_based)
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+ labels.push(label)
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+ ftvecs.push(ftvec)
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+ n_features = [n_features, max_idx].max
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+ end
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+ end
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+ [convert_to_nmatrix(ftvecs, n_features, value_dtype, stype),
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+ NMatrix.new([labels.size, 1], labels, dtype: label_dtype)]
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+ end
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+
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+ # Dump the dataset with the libsvm file format.
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+ #
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+ # @param data [NMatrix] (n_samples x n_features) matrix consisting of feature vectors.
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+ # @param labels [NMatrix] (n_samples x 1) matrix consisting of labels or target values.
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+ # @param filename [String] A path to the output libsvm file.
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+ # @param zero_based [Boolean] Whether the column index starts from 0 (true) or 1 (false).
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+ def dump_libsvm_file(data, labels, filename, zero_based: false)
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+ n_samples = [data.rows, labels.rows].min
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+ label_type = detect_dtype(labels)
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+ value_type = detect_dtype(data)
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+ File.open(filename, 'w') do |file|
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+ n_samples.times do |n|
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+ file.puts(dump_libsvm_line(labels[n], data.row(n),
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+ label_type, value_type, zero_based))
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+ end
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+ end
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+ end
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+
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+ protected
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+
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+ def parse_libsvm_line(line, zero_based)
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+ tokens = line.split
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+ label = tokens.shift.to_f
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+ ftvec = tokens.map do |el|
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+ idx, val = el.split(':')
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+ idx = idx.to_i - (zero_based == false ? 1 : 0)
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+ [idx, val.to_f]
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+ end
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+ max_idx = ftvec.map { |el| el[0] }.max
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+ [label, ftvec, max_idx]
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+ end
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+
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+ def convert_to_nmatrix(data, n_features, value_dtype, stype)
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+ n_samples = data.size
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+ mat = NMatrix.zeros([n_samples, n_features + 1],
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+ dtype: value_dtype, stype: stype)
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+ data.each_with_index do |ftvec, n|
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+ ftvec.each do |el|
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+ mat[n, el[0]] = el[1]
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+ end
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+ end
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+ mat
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+ end
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+
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+ def detect_dtype(data)
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+ type = '%s'
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+ type = '%d' if %i[int8 int16 int32 int64].include?(data.dtype)
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+ type = '%.10g' if %i[float32 float64].include?(data.dtype)
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+ type
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+ end
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+
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+ def dump_libsvm_line(label, ftvec, label_type, value_type, zero_based)
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+ line = format(label_type.to_s, label)
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+ ftvec.to_a.each_with_index do |val, n|
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+ idx = n + (zero_based == false ? 1 : 0)
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+ line += format(" %d:#{value_type}", idx, val) if val != 0.0
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+ end
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+ line
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+ end
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+ end
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+ end
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+ #module LibSVMLoader
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+ # VERSION = "0.1.0"
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+ #end
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+ class LibSVMLoader
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+ module VERSION
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+ MAJOR = 0
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+ MINOR = 1
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+ TINY = 0
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+ STRING = [MAJOR, MINOR, TINY].compact.join('.')
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+ end
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+ end
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+ # coding: utf-8
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+ lib = File.expand_path("../lib", __FILE__)
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+ $LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
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+ require "libsvmloader/version"
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+
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+ Gem::Specification.new do |spec|
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+ spec.name = "libsvmloader"
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+ spec.version = LibSVMLoader::VERSION::STRING
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+ spec.authors = ["yoshoku"]
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+ spec.email = ["yoshoku@outlook.com"]
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+
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+ spec.summary = %q{LibSVMLoader loads (and dumps) dataset file with the libsvm file format.}
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+ spec.homepage = "https://github.com/yoshoku/libsvmloader"
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+ spec.license = "MIT"
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+
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+ spec.files = `git ls-files -z`.split("\x0").reject do |f|
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+ f.match(%r{^(test|spec|features)/})
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+ end
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+ spec.bindir = "exe"
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+ spec.executables = spec.files.grep(%r{^exe/}) { |f| File.basename(f) }
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+ spec.require_paths = ["lib"]
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+
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+ spec.add_development_dependency "bundler", "~> 1.15"
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+ spec.add_development_dependency "rake", "~> 10.0"
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+ spec.add_development_dependency "rspec", "~> 3.0"
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+ spec.add_development_dependency "nmatrix", "~> 0.2.3"
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+ end
metadata ADDED
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+ --- !ruby/object:Gem::Specification
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+ name: libsvmloader
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+ version: !ruby/object:Gem::Version
4
+ version: 0.1.0
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+ platform: ruby
6
+ authors:
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+ - yoshoku
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+ autorequire:
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+ bindir: exe
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+ cert_chain: []
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+ date: 2017-08-12 00:00:00.000000000 Z
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+ dependencies:
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+ - !ruby/object:Gem::Dependency
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+ name: bundler
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+ requirement: !ruby/object:Gem::Requirement
16
+ requirements:
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+ - - "~>"
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+ - !ruby/object:Gem::Version
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+ version: '1.15'
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+ type: :development
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - "~>"
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+ - !ruby/object:Gem::Version
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+ version: '1.15'
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+ - !ruby/object:Gem::Dependency
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+ name: rake
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+ requirement: !ruby/object:Gem::Requirement
30
+ requirements:
31
+ - - "~>"
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+ - !ruby/object:Gem::Version
33
+ version: '10.0'
34
+ type: :development
35
+ prerelease: false
36
+ version_requirements: !ruby/object:Gem::Requirement
37
+ requirements:
38
+ - - "~>"
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+ - !ruby/object:Gem::Version
40
+ version: '10.0'
41
+ - !ruby/object:Gem::Dependency
42
+ name: rspec
43
+ requirement: !ruby/object:Gem::Requirement
44
+ requirements:
45
+ - - "~>"
46
+ - !ruby/object:Gem::Version
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+ version: '3.0'
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+ type: :development
49
+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
51
+ requirements:
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+ - - "~>"
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+ - !ruby/object:Gem::Version
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+ version: '3.0'
55
+ - !ruby/object:Gem::Dependency
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+ name: nmatrix
57
+ requirement: !ruby/object:Gem::Requirement
58
+ requirements:
59
+ - - "~>"
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+ - !ruby/object:Gem::Version
61
+ version: 0.2.3
62
+ type: :development
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
65
+ requirements:
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+ - - "~>"
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+ - !ruby/object:Gem::Version
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+ version: 0.2.3
69
+ description:
70
+ email:
71
+ - yoshoku@outlook.com
72
+ executables:
73
+ - libsvmloader
74
+ extensions: []
75
+ extra_rdoc_files: []
76
+ files:
77
+ - ".gitignore"
78
+ - ".rspec"
79
+ - ".travis.yml"
80
+ - CODE_OF_CONDUCT.md
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+ - Gemfile
82
+ - LICENSE.txt
83
+ - README.md
84
+ - Rakefile
85
+ - bin/console
86
+ - bin/setup
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+ - exe/libsvmloader
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+ - lib/libsvmloader.rb
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+ - lib/libsvmloader/version.rb
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+ - libsvmloader.gemspec
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+ homepage: https://github.com/yoshoku/libsvmloader
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+ licenses:
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+ - MIT
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+ metadata: {}
95
+ post_install_message:
96
+ rdoc_options: []
97
+ require_paths:
98
+ - lib
99
+ required_ruby_version: !ruby/object:Gem::Requirement
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+ requirements:
101
+ - - ">="
102
+ - !ruby/object:Gem::Version
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+ version: '0'
104
+ required_rubygems_version: !ruby/object:Gem::Requirement
105
+ requirements:
106
+ - - ">="
107
+ - !ruby/object:Gem::Version
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+ version: '0'
109
+ requirements: []
110
+ rubyforge_project:
111
+ rubygems_version: 2.6.11
112
+ signing_key:
113
+ specification_version: 4
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+ summary: LibSVMLoader loads (and dumps) dataset file with the libsvm file format.
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+ test_files: []