jekyll-theme-ici3d 0.1.0

data/_includes/MedPH/scheduleStandard.md

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+<div markdown="1">
+
+### Tuesday, 22 June
+
+-  9:00 – 9:20 Introductions, Overview of course (structure and expectations)
+-  9:20 – 10:30 [Introduction to public health, epidemiology, and infectious diseases]({{page.repo}}/raw/master/lectures/Intro_PH_Epi_ID.pdf) (Juliet)
+-  10:30 – 11:00 Coffee break
+-  11:00 – 12:00 [Introduction to infectious disease dynamics, Part I]({{page.repo}}/raw/master/lectures/Intro_ID_Dynamics_I.pdf) (Zinhle)
+-  12:00 – 13:00 [Tutorial I: Introduction to R and Epidemic curves](#computerlabs)
+-  13:00 – 14:00 Lunch
+-  14:00 – 15:00 Tutorial I continued
+-  15:00 – 15:30 [Introduction to projects]({{page.repo}}/raw/master/Project_guidelines.pdf) (Juliet)
+-  15:30 – 16:00 Contemporary example (Rabies): [Background lecture and how to read a scientific paper]({{page.repo}}/raw/master/lectures/How_to_read_exRabies.pdf) (Zinhle)
+
+Assignments
+
+- Complete [Tutorial I](#computerlabs) – due Wed AM **email to Zinhle at zinhle@aims.ac.za**
+- Read [Hampson et al. 2009]({{page.repo}}/raw/master/readings/Hampson2009.pdf) (Rabies) – due Wed AM
+- Start thinking about possible projects (see Assignments tab for more details)
+- Review material on Academic Integrity and Plagiarism (see Assignments tab for more details)
+
+### Wednesday, 23 June
+
+- 9:00 - 10:00 [Introduction to infectious disease dynamics, Part II]({{page.repo}}/raw/master/lectures/Intro_ID_Dynamics_II.pdf) (Zinhle)
+- 10:00 - 10:30 Discussion of BMQs from Tutorial 1 (Juliet)
+-  10:30 – 11:00 Coffee break
+-  11:00 – 12:30 Contemporary example (Rabies): Discussion session (Zinhle)
+-  12:30 – 13:00 Project discussion and development (Juliet)
+-  13:00 – 14:00 Lunch
+-  14:00 – 15:00 [Dynamics of directly transmitted pathogens]({{page.repo}}/raw/master/lectures/Intro_ID_Dynamics_III.pdf) (Juliet)
+-  15:00 – 17:00 [Tutorial II & benchmark questions](#computerlabs), project development
+    - One-on-one meetings with Zinhle
+
+Assignments
+
+- Complete [Tutorial II & benchmark questions](#computerlabs)
+    - **turn in figure (and code) from Tutorial II,  Questions 3 and 4 by email to Zinhle at zinhle@aims.ac.za**
+- Progress on projects – due Thur AM (see Assignments tab for more details)
+
+### Thursday, 24 June
+
+-  9:00 - 9:30  Discussion of BMQs from Tutorial 2 (Zinhle)
+-  9:30 – 10:30 Project discussion and development (Juliet)
+    - One-on-one meetings with Juliet
+-  10:30 – 11:00 Coffee break
+-  11:00 – 11:45 [Binomial Distribution Tutorial](#computerlabs)
+-  11:45 - 13:00 [Transmission in Finite Populations]({{page.repo}}/raw/master/lectures/FinitePopModels.pdf) (Juliet)
+-  13:00 – 14:00 Lunch
+-  14:00 – 15:00 Project development (present on progress at 14:15)
+-  15:00 – 17:00 [Tutorial III: simple stochastic models of epidemics](#computerlabs)
+
+Assignments
+
+- Complete [Tutorial III](#computerlabs) – due Fri AM
+    - **turn in figures and code from Tutorial III Questions by email to Zinhle**
+- Continue proposal development
+- Draft of presentations for practice – due Fri PM (12:30)
+
+### Friday, 25 June
+
+- 9:00 – 10:00 [Dynamics of vector-borne pathogens]({{page.repo}}/raw/master/lectures/Dynamics_VB_Pathogens.pdf) (Zinhle)
+- 10:00 – 10:30  Discussion of BMQs from Tutorial 3 (Juliet)
+- 10:30 – 11:00 Coffee break
+- 11:00 – 11:30 Practice presentations and feedback (Moderator: Juliet)
+- 11:30 - 13:00 Project development and presentation revisions
+- 13:00 – 14:00 Lunch
+- 14:00 - 15:00 Teleconference on SARS-CoV-2 variants of concern
+- 15:15 - 15:45 Wrap-up and preparation for next week (Zinhle)
+- 15:45 – 17:00 Unstructured time: Presentation revision based on feedback and additional practice presentations (as needed)
+
+Assignments
+
+- Finalize presentations, as needed (submit final slides by Sun PM)
+- Complete the remaining items for [MMED preparation](http://www.ici3d.org/MMED/preparation/)
+    - Software installation
+    - Introduciton to Git
+    - Readings (recommended but not required)
+- Rest up for the weeks ahead!
+
+
+### Saturday, 26 June
+
+(Free day)
+
+### Sunday, 27 June
+
+(Free day)
+
+### Monday, 28 June through Friday, 9 July
+
+See [MMED schedule](http://www.ici3d.org/MMED/schedule)
+
+</div>

data/_includes/bottomTable.html

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+</div><!-- markdown -->
+
+</div><!-- /.col-lg-6 -->
+</div><!-- /.row -->
+</div><!-- /.container -->

data/_includes/centerTable.html

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+
+</div><!-- markdown -->
+</div><!-- /.col-lg-6 -->
+<div class="col-lg-6">
+  <div markdown="1">

data/_includes/clinicNavbar.html

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+<!-- NAVBAR -->
+<nav class="navbar navbar-default navbar-dark" role="navigation">
+  <div class="container" style="padding-top:10px">
+    <div class="navbar-header">
+      <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#clinic-nav">
+        <span class="sr-only">Toggle Navigation</span>
+        <i class="fa fa-bars"></i>
+      </button>
+      <a href="{{ site.subdomainurl}}">
+      <h1><span style="color:white; font-family: Comfortaa;">{{ site.title }}</span></h1></a>
+    </div>
+    <!-- MAIN NAVIGATION -->
+    <div id="clinic-nav" class="navbar-collapse collapse navbar-mega-menu">
+      <ul class="nav navbar-nav navbar-right">
+        <li class="dropdown {% if page.tab == 'Preparation' %}active{%endif%}">
+          <a href="{{ site.subdomainurl}}/preparation" class="dropdown-toggle" style="line-height:15px">PREPARATION</a>
+        </li>
+        <li class="dropdown {% if page.tab == 'Logistics' %}active{%endif%}">
+          <a href="{{ site.subdomainurl}}/logistics" class="dropdown-toggle" style="line-height:15px">LOGISTICS</a>
+        </li>
+        <li class="dropdown {% if page.tab == 'Roadmap' %}active{%endif%}">
+          <a href="{{ site.subdomainurl}}/roadmap" class="dropdown-toggle" style="line-height:15px">ROADMAP</a>
+        </li>
+        <li class="dropdown {% if page.tab == 'Schedule' %}active{%endif%}">
+          <a href="{{ site.subdomainurl}}/schedule" class="dropdown-toggle" style="line-height:15px">SCHEDULE</a>
+        </li>
+        <li class="dropdown {% if page.tab == 'Participants' %}active{%endif%}">
+          <a href="{{ site.subdomainurl}}/participants" class="dropdown-toggle" style="line-height:15px">PARTICIPANTS</a>
+        </li>
+        <li class="dropdown {% if page.tab == 'Instructors' %}active{%endif%}">
+          <a href="{{ site.subdomainurl}}/team" class="dropdown-toggle" style="line-height:15px">INSTRUCTORS</a>
+        </li>
+        {% if site.title contains "MMED" %}
+        <li class="dropdown {% if page.tab == 'Projects' %}active{%endif%}">
+          <a href="{{ site.subdomainurl}}/projects" class="dropdown-toggle" style="line-height:15px">PROJECTS</a>
+        </li>
+        {% endif %}
+        <li class="dropdown {% if page.tab == 'Resources' %}active{%endif%}">
+          <a href="{{ site.subdomainurl}}/resources" class="dropdown-toggle" style="line-height:15px">RESOURCES</a>
+        </li>
+      </ul>
+    </div>
+    <!-- END MAIN NAVIGATION -->
+  </div>
+</nav>
+<!-- END NAVBAR -->

data/_includes/contact.html

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+<!-- CALL-TO-ACTION -->
+<section class="call-to-action">
+  <div class="container">
+    <div class="pull-left">
+      <h2 class="section-heading">Have questions or need assistance?</h2>
+    </div>
+    <div class="pull-right">
+      <a href="mailto:admin@ici3d.org?Subject=Email%20from%20ici3d.org" class="btn btn-lg btn-primary btn-rounded-3x" title="Email the ICI3D Program Assistant"><i class="fa fa-envelope-o"></i>  Click here to send us an email!</a>
+    </div>
+  </div>
+</section>
+<!-- END CALL-TO-ACTION -->

data/_includes/directors.html

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+<h2 class="section-heading">PROGRAM DIRECTORS</h2>
+				<!-- TEAM -->
+				<section class="team">
+					<div class="section-content">
+						<div class="col-md-5">
+							<div class="team-member media">
+								<img src="assets/img/team/dushoff.jpg" class="media-object img-circle pull-left" alt="Jonathan Dushoff" height="120" />
+								<div class="media-body">
+									<h3 class="media-heading team-name">Jonathan Dushoff</h3>
+									<strong>Program Director for North America</strong>
+									<hr class="pull-left">
+									<div class="clearfix"></div>
+									<p>Jonathan is a Professor of Biology in the Department of Biology and Department of Mathematics and Statistics at McMaster University. He has been on the ICI3D Core Faculty since the program started in 2012. He became Program Director for North America in 2018 and is currently Co-Director of the ICI3D Program.</p>
+									<ul class="list-inline social-icon">
+                    <li><a href="https://scholar.google.com/citations?user=yVwAcxMAAAAJ"><i class="ai ai-google-scholar"></i></a></li>
+										<li><a href="https://twitter.com/jd_mathbio"><i class="fa fa-twitter"></i></a></li>
+										<li><a href="https://www.linkedin.com/in/jonathan-dushoff-5885764"><i class="fa fa-linkedin"></i></a></li>
+										<li><a href="https://orcid.org/0000-0003-0506-4794"><i class="ai ai-orcid"></i></a></li>
+										<li><a href="https://github.com/dushoff"><i class="fa fa-github"></i></a></li>
+										<li><a href="https://mac-theobio.github.io/dushoff.html"><i class="fa fa-globe"></i></a></li>
+									</ul>
+							</div><!-- media-body -->
+						</div><!-- team-member media -->
+					</div><!-- col-md-5 -->
+						<div class="col-md-5 col-md-offset-2">
+							<div class="team-member media">
+								<img src="assets/img/team/pulliam.jpg" class="media-object img-circle pull-left" alt="Juliet Pulliam" height="120" />
+								<div class="media-body">
+									<h3 class="media-heading team-name">Juliet Pulliam</h3>
+									<strong>Program Director for Africa</strong>
+									<hr class="pull-left">
+									<div class="clearfix"></div>
+									<p>Juliet is the Director of the South African Centre for Epidemiological Modelling and Analysis (SACEMA) and Professor of Applied Mathematics at Stellenbosch University. She served as Program Director from 2012-2016 and Program Director for Africa from 2016 (to present). She is currently Co-Director of the ICI3D Program.</p>
+									<ul class="list-inline social-icon">
+                    <li><a href="https://scholar.google.com/citations?user=N9CMMiQAAAAJ"><i class="ai ai-google-scholar"></i></a></li>
+										<li><a href="https://twitter.com/SACEMAdirector"><i class="fa fa-twitter"></i></a></li>
+										<li><a href="https://za.linkedin.com/in/julietpulliam"><i class="fa fa-linkedin"></i></a></li>
+                    <li><a href="http://orcid.org/0000-0003-3314-8223"><i class="ai ai-orcid"></i></a></li>
+                    <li><a href="https://impactstory.org/u/SACEMAdirector"><i class="ai ai-impactstory"></i></a></li>
+										<li><a href="https://github.com/jrcpulliam"><i class="fa fa-github"></i></a></li>
+									</ul>
+							</div><!-- media-body -->
+						</div><!-- team-member media -->
+					</div><!-- col-md-5 col-md-offset-2 -->
+				</div><!-- section-content -->
+			</section><!-- team -->
+			<!-- END TEAM -->

data/_includes/footer.html

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+<!-- FOOTER -->
+<footer class="footer-minimal text-center">
+  <div class="container">
+    <h5 class="text-muted">
+     {%if page.title == "DAIDD"%}
+        Support for DAIDD 2016 is provided by the <a href="http://www.nsf.gov/" alt="NSF">US National Science Foundation</a> and the <a href="http://www.sacema.org/" alt="SACEMA">South African Centre for Epidemiological Modelling and Analysis</a>.
+     {%else%}
+        The ICI3D program was developed with funding from the <a href="http://www.nigms.nih.gov/" alt="NIGMS">National Institute of General Medical Sciences</a> of the National Institutes of Health under award number R25GM102149.
+     {%endif%}
+  </h5>
+    <br>
+    <ul class="list-inline social-icons light-icons margin-bottom-30px">
+      <li><a href="https://www.facebook.com/groups/206225166162804/" class="facebook-bg"><i class="fa fa-facebook"></i></a></li>
+      <li><a href="https://twitter.com/ICI3D" class="twitter-bg"><i class="fa fa-twitter"></i></a></li>
+      <li><a href="https://plus.google.com/communities/113435488727938001751" class="googleplus-bg"><i class="fa fa-google-plus"></i></a></li>
+      <li><a href="https://www.ncbi.nlm.nih.gov/sites/myncbi/juliet.pulliam.1/collections/50120905/public/" class="pubmed-bg" alt="PubMed"><i class="ai ai-pubmed"></i></a></li>
+    </ul>
+    <div class="copyright">
+      &copy;2016-{{site.year}} The ICI3D Program. All Rights Reserved.
+    </div>
+  </div>
+</footer>
+<!-- END FOOTER -->

data/_includes/head.html

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+<head>
+	<title>{{page.title}}</title>
+	<meta charset="utf-8">
+	<meta name="viewport" content="width=device-width, initial-scale=1.0">
+	<meta name="description" content="International Clinics on Infectious Disease Dynamics and Data">
+	<meta name="author" content="JRC Pulliam">
+	<!-- CSS -->
+	<link href="{{ site.url }}/assets/css/bootstrap.css" rel="stylesheet" type="text/css">
+	<link href="{{ site.url }}/assets/css/font-awesome.min.css" rel="stylesheet" type="text/css">
+	<link href="{{ site.url }}/assets/css/academicons.min.css" rel="stylesheet" type="text/css">
+	<link href="{{ site.url }}/assets/css/main.css" rel="stylesheet" type="text/css">
+	<link href="{{ site.url }}/assets/css/my-custom-styles.css" rel="stylesheet" type="text/css">
+	<link href="{{ site.url }}/assets/css/skins/ici3dBlue.css" rel="stylesheet" type="text/css">
+	<!-- IE 9 Fallback-->
+	<!--[if IE 9]>
+		<link href="{{ site.url }}/assets/css/ie.css" rel="stylesheet">
+	<![endif]-->
+	<!-- GOOGLE FONTS -->
+	<link href='//fonts.googleapis.com/css?family=Open+Sans:300,400italic,400,600,700' rel='stylesheet' type='text/css'>
+	<link href='//fonts.googleapis.com/css?family=Roboto+Condensed:300,300italic,400italic,700,400,300' rel='stylesheet' type='text/css'>
+	<link href='//fonts.googleapis.com/css?family=Comfortaa:300normal,400normal,700normal' rel='stylesheet' type='text/css'>
+	<!-- FAVICONS -->
+	<link rel="apple-touch-icon-precomposed" sizes="144x144" href="{{ site.url }}/assets/ico/ici3d144x144.png">
+	<link rel="apple-touch-icon-precomposed" sizes="114x114" href="{{ site.url }}/assets/ico/ici3d114x114.png">
+	<link rel="apple-touch-icon-precomposed" sizes="72x72" href="{{ site.url }}/assets/ico/ici3d72x72.png">
+	<link rel="apple-touch-icon-precomposed" href="{{ site.url }}/assets/ico/ici3d57x57.png">
+	<link rel="shortcut icon" href="{{ site.url }}/assets/ico/favicon.ico">
+</head>

data/_includes/header.html

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+<!-- BREADCRUMBS -->
+<div class="page-header {% if page.tab != "About" %}has-intro{% endif %}">
+  <div class="container">
+    <div class="left pull-left">
+      <h1 class="page-title">{{ page.longtitle }}</h1>
+      {% if page.summary contains "" %}
+        <p class="page-header-intro">{{ page.summary }}</p>
+      {% endif %}
+      <h1 class="page-title">{{ site.longtitle }}</h1>
+      {% if site.summary contains "" %}
+        <p class="page-header-intro">{{ site.summary }}</p>
+      {% endif %}
+    </div>
+    <ol class="breadcrumb link-accent">
+      {% unless site.title contains "D" %}
+      <li><a href="{{ site.absoluteurl }}">Home</a></li>
+      {% endunless %}
+      {% if page.tab != page.title %}
+        <li><a href="{{ site.url }}{{ site.baseurl }}/{{ page.tab | downcase }}/">{{ page.tab }}</a></li>
+      {% endif %}
+      {% if page.parent contains "" %}
+        <li><a href="{{ site.url }}{{ site.baseurl }}/{{ page.parent }}"/>{{ page.parent }}</a></li>
+      {% endif %}
+      <li class="active">{{ page.title }}</li>
+    </ol>
+    {% if page.title == 'Shadow' %}
+      <img src="{{site.url}}{{site.path}}/assets/img/8hearts.png" alt="" title="Eight of Hearts"  style="margin:0px; display: block; width : 5%; border-radius: 0px"/>
+    {% endif %}
+  </div>
+</div>
+<!-- END BREADCRUMBS -->

data/_includes/hero.html

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+<!-- HERO SECTION -->
+<section class="hero-unit-fullscreen">
+  <div class="overlay"></div>
+  <div class="container" top=-40%>
+    <div class="left">
+      <img src="{{site.url}}/assets/img/logo/ici3d-logo-white_v3.png" alt="International Clinics on Infectious Disease Dynamics and Data" width=40%/>
+      <p class="lead">{{page.subtitle}}</p>
+    </div>
+  </div>
+  <div class="scroll-down down-arrow">
+    <a href="#mission"><i class="fa fa-angle-down"></i></a>
+  </div>
+</section>
+<!-- END HERO SECTION -->

data/_includes/index.md

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+---
+layout: main
+title: ICI3D
+tab: Home
+subtitle: International Clinics on Infectious Disease Dynamics and Data
+welcome: Welcome to the ICI3D Program!
+summary: The ICI3D Program provides junior researchers from the US and Africa with opportunities to develop the toolsets necessary to conduct integrative research in infectious disease dynamics and to communicate their questions, methods, and findings across disciplinary boundaries.
+more: true
+---

data/_includes/mission.html

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+<!-- BRIEF ABOUT -->
+<section id="mission">
+  <div class="heading-center">
+    <h2 class="section-heading">OUR MISSION</h2>
+    <p class="lead">What we do</p>
+    <hr>
+  </div>
+  <div class="container text-center">
+    <p class="lead">{{ page.summary }} </p>
+    <a href="./about" class="btn btn-primary btn-outline btn-rounded-2x">READ MORE</a>
+  </div>
+</section>
+<!-- END BRIEF ABOUT -->

data/_includes/navStructure.html

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+<!-- MAIN NAVIGATION -->
+<div id="main-nav" class="navbar-collapse collapse navbar-mega-menu">
+  <ul class="nav navbar-nav navbar-right">
+    <li class="dropdown {% if page.tab == 'Home' %}active{%endif%}">
+      <a href="{{ site.absoluteurl }}/" class="dropdown-toggle" {% if page.tab == 'Home' %}data-toggle="dropdown"{%endif%}>HOME {% if page.tab == 'Home' %}<i class="fa fa-angle-down"></i>{%endif%}</a>
+      {% if page.tab == 'Home' %}
+      <ul class="dropdown-menu" role="menu">
+        <li><a href="{{ site.absoluteurl }}/about">About</a></li>
+        <li><a href="{{ site.absoluteurl }}/#partners">Partners</a></li>
+      </ul>
+      {%endif%}
+    </li>
+    <li class="dropdown {% if page.tab == 'Programs' %}active{%endif%}">
+      <a href="{{ site.absoluteurl }}/programs/" class="dropdown-toggle" data-toggle="dropdown">PROGRAMS <i class="fa fa-angle-down"></i></a>
+      <ul class="dropdown-menu" role="menu">
+        <li><a href="{{ site.absoluteurl }}/mmed">MMED clinic</a></li>
+        <li><a href="{{ site.absoluteurl }}/daidd">DAIDD clinic</a></li>
+        <li><a href="{{ site.absoluteurl }}/seams">SEAMS clinic</a></li>
+        <li><a href="{{ site.absoluteurl }}/i3d">I3D exchange</a></li>
+      </ul>
+    </li>
+    <li class="dropdown {% if page.tab == 'People' %}active{%endif%}">
+      <a href="#" class="dropdown-toggle" data-toggle="dropdown">PEOPLE<i class="fa fa-angle-down"></i></a>
+      <ul class="dropdown-menu" role="menu">
+        <li><a href="{{ site.absoluteurl }}/people/faculty">Program Faculty</a></li>
+        <li><a href="{{ site.absoluteurl }}/people/staff">Program Staff</a></li>
+        <li><a href="{{ site.absoluteurl }}/people/scholars">I3D Exchange Scholars</a></li>
+      </ul>
+    </li>
+    <li class="dropdown {% if page.tab == 'Publications' %}active{%endif%}">
+      <a href="{{ site.absoluteurl }}/publications" class="dropdown-toggle">PUBLICATIONS</a>
+    </li>
+    <li class="dropdown mega-menu">
+        <a href="#" data-toggle="dropdown">MORE <i class="fa fa-angle-down"></i></a>
+        <ul class="dropdown-menu mega-menu-container">
+          <li>
+            <div class="mega-menu-content">
+              <div class="row">
+                <div class="col-md-4">
+                  <h5 class="menu-heading">Resources</h5>
+                  <ul class="list-unstyled list-menu">
+                    <li><a href="{{ site.absoluteurl }}/tutorials"><i class="fa fa-laptop"></i> Tutorials</a></li>
+                    <!--li><a href="{{ site.absoluteurl }}/exercises"><i class="fa fa-cogs"></i> Exercises <span class="label label-success label-main-nav">Coming soon!</span></a></li-->
+                    <li><a href="{{ site.absoluteurl }}/presentations"><i class="fa fa-pie-chart"></i> Presentations</a></li>
+                  </ul>
+                </div>
+                <div class="col-md-4">
+                  <h5 class="menu-heading">Archives</h5>
+                  <ul class="list-unstyled list-menu">
+                    <li><a href="{{ site.absoluteurl }}/MMED"><i class="fa fa-link"></i> MMED</a></li>
+                    <li><a href="{{ site.absoluteurl }}/DAIDD"><i class="fa fa-link"></i> DAIDD</a></li>
+                  </ul>
+                </div>
+                <div class="col-md-4">
+                  <h5 class="menu-heading">For alumni</h5>
+                  <ul class="list-unstyled list-menu">
+                    <!--li><a href="http://forum.ici3d.org/"><i class="fa fa-group"></i> ICI3D Community Forum <span class="label label-success label-main-nav">Coming soon!</span></a></li>
+                    <li><a href="{{ site.absoluteurl }}/paww"><i class="fa fa-pencil-square"></i> PaWW</a></li-->
+                    <li><a href="{{ site.absoluteurl }}/p_and_p"><i class="fa fa-bar-chart"></i>P &amp; P</a></li>
+                    <li><a href="https://github.com/ICI3D/"><i class="fa fa-github-alt"></i>ICI3D on GitHub</a></li>
+                  </ul>
+                </div>
+              </div>
+            </div>
+          </li>
+        </ul>
+      </li>
+  </ul>
+</div>
+<!-- END MAIN NAVIGATION -->

data/_includes/navbar.html

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+<!-- NAVBAR -->
+{% if page.layout == 'main' %}
+<nav class="navbar navbar-default navbar-transparent " role="navigation">
+{% else %}
+<nav class="navbar navbar-default " role="navigation">
+{% endif %}
+  <div class="container">
+    {% unless page.layout == "main" %}
+    <div class="row">
+      <div class="col-lg-3">
+          <img src="{{ site.url }}/assets/img/logo/ici3d-logo-nav.png"  alt="International Clinics on Infectious Disease Dynamics and Data" width="80%" />
+      </div>
+      <div class="col-lg-9">
+    <!-- TOPBAR -->
+    <div class="topbar">
+      {% if page.layout == 'future' %}
+      <!--ul class="list-inline top-nav">
+        <li>
+          <div class="btn-group">
+            <button type="button" class="btn btn-link dropdown-toggle btn-xs" data-toggle="dropdown"><img src="{{ site.url }}/assets/img/flags/United-States.png" alt="United States"> United States <span class="caret"></span></button>
+            <ul class="dropdown-menu dropdown-menu-right country-selector" role="menu">
+              <li>
+                <a href="#"><img src="{{ site.url }}/assets/img/flags/United-States.png" alt="United States"> United States</a>
+              </li>
+              <li>
+                <a href="#"><img src="{{ site.url }}/assets/img/flags/South-Africa.png" alt="South Africa"> South Africa</a>
+              </li>
+            </ul>
+          </div>
+        </li>
+        <li><a href="#">Help</a></li>
+        <li><a href="#">Support</a></li>
+      </ul>
+      <div class="searchbox">
+        <form method="post">
+          <div class="input-group input-group-sm">
+            <input type="text" class="form-control" placeholder="search ...">
+            <span class="input-group-btn">
+              <button class="btn btn-default" type="button"><i class="fa fa-search"></i></button>
+            </span>
+          </div>
+        </form>
+      </div-->
+      {% else %}
+      <h4 style='color: #15378a'>
+        International Clinics on Infectious Disease Dynamics and Data Program
+      </h4>
+      {% endif %}
+    </div>
+    <!-- END TOPBAR -->
+    {% endunless %}
+    <div class="navbar-header">
+      <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#main-nav">
+        <span class="sr-only">Toggle Navigation</span>
+        <i class="fa fa-bars"></i>
+      </button>
+    </div>
+    {% include navStructure.html %}
+    {% unless page.layout == "main" %}
+  </div>
+</div>
+    {% endunless %}
+  </div>
+</nav>
+<!-- END NAVBAR -->

data/_includes/outputs.html

@@ -0,0 +1,74 @@
+<!-- OUTPUTS (TESTIMONIAL) -->
+<section class="testimonial slick-carousel" id="outputs">
+  <div class="heading-center">
+    <h2 class="section-heading">EXAMPLE OUTPUTS</h2>
+    <p class="lead">Publications, presentations, &amp; other products</p>
+    <hr>
+  </div>
+  <div class="container testimonial-container">
+    <div class="testimonial-body">
+      <p>Reevaluating cumulative HIV-1 viral load as a prognostic predictor: predicting opportunistic infection incidence and mortality in a Ugandan cohort. <span><a href="http://aje.oxfordjournals.org/cgi/reprint/kwv303?ijkey=KxcBzzl10c7eRVS&keytype=ref" title="Sempa et al 2016">[PDF]</a></span></p>
+      <div class="testimonial-author">
+        <img src="{{site.url}}/assets/img/participants/SempaJB.jpg" alt="I3D Exchange Scholar Joseph Sempa" class="pull-left">
+        <span><span class="author-name">JB Sempa et al. 2016</span> <em>American Journal of Epidemiology</em></span>
+      </div>
+    </div>
+    <div class="testimonial-body">
+      <p>Cost-effectiveness of post-treatment follow-up examinations and secondary prevention of tuberculosis in a high-incidence setting – a model-based analysis. <span><a href="https://doi.org/10.1016/S2214-109X(20)30227-8" title="Marx et al 2020">[link]</a></span><br></p>
+      <div class="testimonial-author">
+        <img src="{{site.url}}/assets/img/scholars/marx.jpg" alt="Florian Marx" class="pull-left">
+        <span><span class="author-name">F Marx et al. 2020</span> <em>The Lancet Global Health</em></span>
+      </div>
+    </div>
+    <div class="testimonial-body">
+      <p>Partner age differences and associated sexual risk behaviours among adolescent girls and young women in a cash transfer programme for schooling in Malawi. <span><a href="https://doi.org/10.1186/s12889-018-5327-7" title="Beauclair et al 2018">[link]</a></span><br></p>
+      <div class="testimonial-author">
+        <img src="{{site.url}}/assets/img/scholars/beauclair.jpg" alt="Roxy Beauclair" class="pull-left">
+        <span><span class="author-name">R Beauclair et al. 2018</span> <em>BMC Public Health</em></span>
+      </div>
+    </div>
+    <div class="testimonial-body">
+      <p>Host-seeking efficiency can explain population dynamics of the tsetse fly <em>Glossina morsitans morsitans</em> in response to host density decline. <span><a href="https://doi.org/10.1371/journal.pntd.0005730" title="Lord et al 2017">[link]</a></span><br></p>
+      <div class="testimonial-author">
+        <img src="{{site.url}}/assets/img/scholars/lord.jpg" alt="Jennifer Lord" class="pull-left">
+        <span><span class="author-name">JS Lord et al. 2017</span> <em>PLOS Neglected Tropical Diseases</em></span>
+      </div>
+    </div>
+    <div class="testimonial-body">
+      <p>Resource-driven encounters and the induction of disease among consumers. <span><a href="http://rsif.royalsocietypublishing.org/content/14/135/20170555" title="Borchering et al 2017">[link]</a></span><br></p>
+      <div class="testimonial-author">
+        <img src="{{site.url}}/assets/img/team/borchering.jpg" alt="Rebecca Borchering" class="pull-left">
+        <span><span class="author-name">RK Borchering et al. 2017</span> <em>Journal of the Royal Society Interface</em></span>
+      </div>
+    </div>
+    <div class="testimonial-body">
+      <p>A dynamic model for estimating adult female mortality from ovarian dissection data for the tsetse fly <em>Glossina pallidipes</em> Austen sampled in Zimbabwe. <span><a href="https://doi.org/10.1371/journal.pntd.0005813" title="Ackley and Hargrove 2017">[link]</a></span></p>
+      <div class="testimonial-author">
+        <img src="{{site.url}}/assets/img/scholars/ackley.jpg" alt="SF Ackley" class="pull-left">
+        <span><span class="author-name">SF Ackley and JW Hargrove 2017</span> <em>PLoS Neglected Tropical Diseases</em></span>
+      </div>
+  </div>
+    <div class="testimonial-body">
+      <p>Impact of age and sex on CD4+ cell count trajectories following treatment initiation: an analysis of the Tanzanian HIV treatment database. <span><a href="http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0164148" title="Means, Risher, Ujeneza et al 2016">[link]</a></span></p>
+      <div class="testimonial-author">
+        <img src="{{site.url}}/assets/img/team/ujeneza.jpg" alt="Eva Ujeneza" class="pull-left">
+        <span><span class="author-name">A Means, K Risher, E Ujeneza et al. 2016</span> <em>PLOS ONE</em></span>
+      </div>
+  </div>
+  <div class="testimonial-body">
+    <p>CD4 cell count: Declining value for antiretroviral therapy eligibility. <span><a href="http://cid.oxfordjournals.org/content/early/2016/01/28/cid.civ1224.full" title="Ying et al 2016">[link]</a></span></p>
+    <div class="testimonial-author">
+      <img src="{{site.url}}/assets/img/scholars/ying.jpg" alt="Roger Ying" class="pull-left">
+      <span><span class="author-name">R Ying et al. 2016</span> <em>Clinical Infectious Diseases</em></span>
+    </div>
+  </div>
+  <div class="testimonial-body">
+    <p>Spatial heterogeneity in projected leprosy trends in India. <span><a href="http://parasitesandvectors.biomedcentral.com/articles/10.1186/s13071-015-1124-7" title="Brook et al 2015">[link]</a></span><br></p>
+    <div class="testimonial-author">
+      <img src="{{site.url}}/assets/img/team/brook.jpg" alt="Cara Brook" class="pull-left">
+      <span><span class="author-name">CE Brook et al. 2015</span> <em>Parasites and Vectors</em></span>
+    </div>
+  </div>
+</div>
+</section>
+<!-- END OUTPUTS -->