jekyll-theme-ici3d 0.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (330) hide show
  1. checksums.yaml +7 -0
  2. data/LICENSE.txt +21 -0
  3. data/README.md +50 -0
  4. data/_data/publications/pulliam2012.yml +12 -0
  5. data/_data/team/ackley.yml +25 -0
  6. data/_data/team/are.yml +22 -0
  7. data/_data/team/beauclair.yml +14 -0
  8. data/_data/team/bekele.yml +14 -0
  9. data/_data/team/bellan.yml +46 -0
  10. data/_data/team/bolton.yml +33 -0
  11. data/_data/team/borchering.yml +65 -0
  12. data/_data/team/brook.yml +15 -0
  13. data/_data/team/brown.yml +18 -0
  14. data/_data/team/bruce.yml +26 -0
  15. data/_data/team/brucePA.yml +9 -0
  16. data/_data/team/deleo.yml +49 -0
  17. data/_data/team/delva.yml +15 -0
  18. data/_data/team/dushoff.yml +52 -0
  19. data/_data/team/ervin.yml +10 -0
  20. data/_data/team/faikah.yml +26 -0
  21. data/_data/team/grebe.yml +36 -0
  22. data/_data/team/hargrove.yml +36 -0
  23. data/_data/team/hitchcock.yml +10 -0
  24. data/_data/team/hladish.yml +45 -0
  25. data/_data/team/january.yml +9 -0
  26. data/_data/team/kassanjee.yml +20 -0
  27. data/_data/team/li.yml +45 -0
  28. data/_data/team/lord.yml +20 -0
  29. data/_data/team/marx.yml +14 -0
  30. data/_data/team/mcintosh.yml +20 -0
  31. data/_data/team/mhlanga.yml +22 -0
  32. data/_data/team/mthombothi.yml +23 -0
  33. data/_data/team/mugwagwa.yml +18 -0
  34. data/_data/team/mwangi.yml +24 -0
  35. data/_data/team/mwebaze.yml +20 -0
  36. data/_data/team/ndifon.yml +18 -0
  37. data/_data/team/ngonghala.yml +30 -0
  38. data/_data/team/nondi.yml +14 -0
  39. data/_data/team/nyamai.yml +18 -0
  40. data/_data/team/october.yml +9 -0
  41. data/_data/team/paradza.yml +19 -0
  42. data/_data/team/pearson.yml +58 -0
  43. data/_data/team/porco.yml +14 -0
  44. data/_data/team/pulliam.yml +51 -0
  45. data/_data/team/reiner.yml +18 -0
  46. data/_data/team/scheepers.yml +9 -0
  47. data/_data/team/scott.yml +51 -0
  48. data/_data/team/sempa.yml +32 -0
  49. data/_data/team/sikhondze.yml +14 -0
  50. data/_data/team/template.yml +18 -0
  51. data/_data/team/ujeneza.yml +38 -0
  52. data/_data/team/vanschalkwyk.yml +32 -0
  53. data/_data/team/welte.yml +18 -0
  54. data/_data/team/williams.yml +28 -0
  55. data/_data/team/ying.yml +21 -0
  56. data/_includes/MedPH/.DS_Store +0 -0
  57. data/_includes/MedPH/assignments.md +42 -0
  58. data/_includes/MedPH/assignmentsStandard.md +74 -0
  59. data/_includes/MedPH/computerlabs.md +38 -0
  60. data/_includes/MedPH/computerlabsStandard.md +38 -0
  61. data/_includes/MedPH/lectures.md +12 -0
  62. data/_includes/MedPH/references.md +71 -0
  63. data/_includes/MedPH/schedule.md +85 -0
  64. data/_includes/MedPH/scheduleStandard.md +93 -0
  65. data/_includes/bottomTable.html +5 -0
  66. data/_includes/centerTable.html +5 -0
  67. data/_includes/clinicNavbar.html +46 -0
  68. data/_includes/contact.html +12 -0
  69. data/_includes/directors.html +47 -0
  70. data/_includes/footer.html +23 -0
  71. data/_includes/head.html +28 -0
  72. data/_includes/header.html +31 -0
  73. data/_includes/hero.html +14 -0
  74. data/_includes/index.md +9 -0
  75. data/_includes/mission.html +13 -0
  76. data/_includes/navStructure.html +70 -0
  77. data/_includes/navbar.html +65 -0
  78. data/_includes/outputs.html +74 -0
  79. data/_includes/partners.html +75 -0
  80. data/_includes/profile.html +67 -0
  81. data/_includes/publications/faculty.md +13 -0
  82. data/_includes/publications/instructional.md +5 -0
  83. data/_includes/publications/participant.md +33 -0
  84. data/_includes/talk.html +12 -0
  85. data/_includes/topTable.html +6 -0
  86. data/_includes/upcoming.html +43 -0
  87. data/_layouts/clinic.liquid +43 -0
  88. data/_layouts/example.liquid +601 -0
  89. data/_layouts/main.liquid +34 -0
  90. data/_layouts/medph.page.liquid +60 -0
  91. data/_layouts/page.liquid +41 -0
  92. data/_layouts/people.page.liquid +27 -0
  93. data/_layouts/profile.liquid +44 -0
  94. data/_layouts/redirect.liquid +15 -0
  95. data/_layouts/talk.liquid +42 -0
  96. data/assets/css/academicons.css +249 -0
  97. data/assets/css/academicons.min.css +1 -0
  98. data/assets/css/bootstrap.css +6760 -0
  99. data/assets/css/bootstrap.css.map +1 -0
  100. data/assets/css/bootstrap.min.css +6 -0
  101. data/assets/css/font-awesome.css +2086 -0
  102. data/assets/css/font-awesome.min.css +4 -0
  103. data/assets/css/ie.css +5 -0
  104. data/assets/css/main-one-page.css +6433 -0
  105. data/assets/css/main.css +7160 -0
  106. data/assets/css/my-custom-styles.css +14 -0
  107. data/assets/css/shop-main.css +3117 -0
  108. data/assets/css/skins/brown.css +299 -0
  109. data/assets/css/skins/deepskyblue.css +299 -0
  110. data/assets/css/skins/goldenrod.css +299 -0
  111. data/assets/css/skins/ici3dBlue.css +229 -0
  112. data/assets/css/skins/ici3dBlue.css.map +7 -0
  113. data/assets/css/skins/ici3dIndigo.css +229 -0
  114. data/assets/css/skins/ici3dIndigo.css.map +7 -0
  115. data/assets/css/skins/indianred.css +299 -0
  116. data/assets/css/skins/lightgreen.css +299 -0
  117. data/assets/css/skins/orange.css +299 -0
  118. data/assets/css/skins/seagreen.css +299 -0
  119. data/assets/css/skins/slategray.css +299 -0
  120. data/assets/fonts/academicons.eot +0 -0
  121. data/assets/fonts/academicons.svg +66 -0
  122. data/assets/fonts/academicons.ttf +0 -0
  123. data/assets/fonts/academicons.woff +0 -0
  124. data/assets/fonts/fontawesome-webfont.eot +0 -0
  125. data/assets/fonts/fontawesome-webfont.svg +655 -0
  126. data/assets/fonts/fontawesome-webfont.ttf +0 -0
  127. data/assets/fonts/fontawesome-webfont.woff +0 -0
  128. data/assets/fonts/fontawesome-webfont.woff2 +0 -0
  129. data/assets/fonts/glyphicons-halflings-regular.eot +0 -0
  130. data/assets/fonts/glyphicons-halflings-regular.svg +288 -0
  131. data/assets/fonts/glyphicons-halflings-regular.ttf +0 -0
  132. data/assets/fonts/glyphicons-halflings-regular.woff +0 -0
  133. data/assets/fonts/glyphicons-halflings-regular.woff2 +0 -0
  134. data/assets/ico/favicon.ico +0 -0
  135. data/assets/ico/favicon.png +0 -0
  136. data/assets/ico/ici3d114x114.png +0 -0
  137. data/assets/ico/ici3d144x144.png +0 -0
  138. data/assets/ico/ici3d57x57.png +0 -0
  139. data/assets/ico/ici3d72x72.png +0 -0
  140. data/assets/img/8hearts.png +0 -0
  141. data/assets/img/MMED2015_tutorials.jpg +0 -0
  142. data/assets/img/badge.png +0 -0
  143. data/assets/img/blog/balloon-med.jpg +0 -0
  144. data/assets/img/blog/balloon.jpg +0 -0
  145. data/assets/img/blog/buildings-med.jpg +0 -0
  146. data/assets/img/blog/buildings.jpg +0 -0
  147. data/assets/img/blog/people-med.jpg +0 -0
  148. data/assets/img/blog/people.jpg +0 -0
  149. data/assets/img/bx_loader.gif +0 -0
  150. data/assets/img/clients/logo1.png +0 -0
  151. data/assets/img/clients/logo2.png +0 -0
  152. data/assets/img/clients/logo3.png +0 -0
  153. data/assets/img/clients/logo4.png +0 -0
  154. data/assets/img/clients/logo5.png +0 -0
  155. data/assets/img/flags/China.png +0 -0
  156. data/assets/img/flags/Germany.png +0 -0
  157. data/assets/img/flags/Japan.png +0 -0
  158. data/assets/img/flags/South-Africa.png +0 -0
  159. data/assets/img/flags/United-Kingdom.png +0 -0
  160. data/assets/img/flags/United-States.png +0 -0
  161. data/assets/img/free.png +0 -0
  162. data/assets/img/fullscreen-bg.jpg +0 -0
  163. data/assets/img/gray_jean.png +0 -0
  164. data/assets/img/hero-unit-bg.png +0 -0
  165. data/assets/img/hero-unit-obj.png +0 -0
  166. data/assets/img/hero-unit-obj2.png +0 -0
  167. data/assets/img/hero-unit-obj3.png +0 -0
  168. data/assets/img/intro-img.png +0 -0
  169. data/assets/img/location-pin.png +0 -0
  170. data/assets/img/logo/ici3d-logo-light.png +0 -0
  171. data/assets/img/logo/ici3d-logo-nav.png +0 -0
  172. data/assets/img/logo/ici3d-logo-white.png +0 -0
  173. data/assets/img/logo/ici3d-logo-white_v2.png +0 -0
  174. data/assets/img/logo/ici3d-logo-white_v3.png +0 -0
  175. data/assets/img/logo/repute-logo-light-brown.png +0 -0
  176. data/assets/img/logo/repute-logo-light-deepskyblue.png +0 -0
  177. data/assets/img/logo/repute-logo-light-goldenrod.png +0 -0
  178. data/assets/img/logo/repute-logo-light-indianred.png +0 -0
  179. data/assets/img/logo/repute-logo-light-lightgreen.png +0 -0
  180. data/assets/img/logo/repute-logo-light-orange.png +0 -0
  181. data/assets/img/logo/repute-logo-light-seagreen.png +0 -0
  182. data/assets/img/logo/repute-logo-light-slategray.png +0 -0
  183. data/assets/img/logo/repute-logo-light.png +0 -0
  184. data/assets/img/logo/repute-logo-nav-brown.png +0 -0
  185. data/assets/img/logo/repute-logo-nav-deepskyblue.png +0 -0
  186. data/assets/img/logo/repute-logo-nav-goldenrod.png +0 -0
  187. data/assets/img/logo/repute-logo-nav-indianred.png +0 -0
  188. data/assets/img/logo/repute-logo-nav-light.png +0 -0
  189. data/assets/img/logo/repute-logo-nav-lightgreen.png +0 -0
  190. data/assets/img/logo/repute-logo-nav-orange.png +0 -0
  191. data/assets/img/logo/repute-logo-nav-seagreen.png +0 -0
  192. data/assets/img/logo/repute-logo-nav-slategray.png +0 -0
  193. data/assets/img/logo/repute-logo-nav.png +0 -0
  194. data/assets/img/mentors/are.jpg +0 -0
  195. data/assets/img/mentors/bolton.jpg +0 -0
  196. data/assets/img/mentors/brown.jpg +0 -0
  197. data/assets/img/mentors/kassanjee.jpg +0 -0
  198. data/assets/img/mentors/mhlanga.jpg +0 -0
  199. data/assets/img/mentors/nyamai.png +0 -0
  200. data/assets/img/news/featured-news.png +0 -0
  201. data/assets/img/news/news1.png +0 -0
  202. data/assets/img/news/news2.png +0 -0
  203. data/assets/img/news/news3.png +0 -0
  204. data/assets/img/news/news4.png +0 -0
  205. data/assets/img/news/news5.png +0 -0
  206. data/assets/img/other/snoep.jpg +0 -0
  207. data/assets/img/page-header-bg.png +0 -0
  208. data/assets/img/participants/SempaJB.jpg +0 -0
  209. data/assets/img/partners/AIMS-SA.jpg +0 -0
  210. data/assets/img/partners/CEMA_UN.pdf +0 -0
  211. data/assets/img/partners/CEMA_UN.png +0 -0
  212. data/assets/img/partners/CIDID.png +0 -0
  213. data/assets/img/partners/CIDID_long.png +0 -0
  214. data/assets/img/partners/Colby.png +0 -0
  215. data/assets/img/partners/MIDAS.png +0 -0
  216. data/assets/img/partners/McMaster.jpg +0 -0
  217. data/assets/img/partners/PSU.png +0 -0
  218. data/assets/img/partners/Proctor.png +0 -0
  219. data/assets/img/partners/SACEMA_228.png +0 -0
  220. data/assets/img/partners/UCSF.png +0 -0
  221. data/assets/img/partners/UF.png +0 -0
  222. data/assets/img/partners/UGA_228.png +0 -0
  223. data/assets/img/pattern-geometry.png +0 -0
  224. data/assets/img/portfolio/800x500/work1.png +0 -0
  225. data/assets/img/portfolio/800x500/work2.png +0 -0
  226. data/assets/img/portfolio/800x500/work3.png +0 -0
  227. data/assets/img/portfolio/800x500/work4.png +0 -0
  228. data/assets/img/portfolio/800x500/work5.png +0 -0
  229. data/assets/img/portfolio/800x500/work6.png +0 -0
  230. data/assets/img/portfolio/800x500/work7.png +0 -0
  231. data/assets/img/portfolio/800x500/work8.png +0 -0
  232. data/assets/img/portfolio/800x800/work1.png +0 -0
  233. data/assets/img/portfolio/800x800/work2.png +0 -0
  234. data/assets/img/portfolio/800x800/work3.png +0 -0
  235. data/assets/img/portfolio/800x800/work4.png +0 -0
  236. data/assets/img/portfolio/800x800/work5.png +0 -0
  237. data/assets/img/portfolio/800x800/work6.png +0 -0
  238. data/assets/img/portfolio/800x800/work7.png +0 -0
  239. data/assets/img/portfolio/800x800/work8.png +0 -0
  240. data/assets/img/portfolio/single/bicycle.jpg +0 -0
  241. data/assets/img/portfolio/single/blurred_lines.jpg +0 -0
  242. data/assets/img/portfolio/single/edge.jpg +0 -0
  243. data/assets/img/scholars/ackley.jpg +0 -0
  244. data/assets/img/scholars/beauclair.jpg +0 -0
  245. data/assets/img/scholars/beauclair.png +0 -0
  246. data/assets/img/scholars/bekele.jpg +0 -0
  247. data/assets/img/scholars/lord.jpg +0 -0
  248. data/assets/img/scholars/marx.jpg +0 -0
  249. data/assets/img/scholars/mcintosh.jpg +0 -0
  250. data/assets/img/scholars/mwebaze.jpg +0 -0
  251. data/assets/img/scholars/nondi.jpg +0 -0
  252. data/assets/img/scholars/sempa.jpg +0 -0
  253. data/assets/img/scholars/ying.jpg +0 -0
  254. data/assets/img/sliders/full-slide-color.jpg +0 -0
  255. data/assets/img/sliders/full-slide-color2.jpg +0 -0
  256. data/assets/img/sliders/full-slide-color3.jpg +0 -0
  257. data/assets/img/sliders/full-slide.jpg +0 -0
  258. data/assets/img/sliders/full-slide2.jpg +0 -0
  259. data/assets/img/sliders/full-slide3.jpg +0 -0
  260. data/assets/img/sliders/slider1-h500.png +0 -0
  261. data/assets/img/sliders/slider2-h500.png +0 -0
  262. data/assets/img/sliders/slider3-h500.png +0 -0
  263. data/assets/img/team/bellan.jpg +0 -0
  264. data/assets/img/team/borchering.jpg +0 -0
  265. data/assets/img/team/brook.jpg +0 -0
  266. data/assets/img/team/bruce.jpg +0 -0
  267. data/assets/img/team/deleo.jpg +0 -0
  268. data/assets/img/team/delva.jpg +0 -0
  269. data/assets/img/team/dushoff.jpg +0 -0
  270. data/assets/img/team/ervin.jpg +0 -0
  271. data/assets/img/team/grebe.jpg +0 -0
  272. data/assets/img/team/hargrove.jpg +0 -0
  273. data/assets/img/team/hitchcock.jpg +0 -0
  274. data/assets/img/team/hladish.jpg +0 -0
  275. data/assets/img/team/january.jpg +0 -0
  276. data/assets/img/team/li.jpg +0 -0
  277. data/assets/img/team/mthombothi.jpg +0 -0
  278. data/assets/img/team/mugwagwa.jpg +0 -0
  279. data/assets/img/team/mwangi.png +0 -0
  280. data/assets/img/team/ndifon.jpg +0 -0
  281. data/assets/img/team/ngonghala.jpg +0 -0
  282. data/assets/img/team/october.jpg +0 -0
  283. data/assets/img/team/paradza.jpg +0 -0
  284. data/assets/img/team/pearson.jpg +0 -0
  285. data/assets/img/team/porco.jpg +0 -0
  286. data/assets/img/team/pulliam.jpg +0 -0
  287. data/assets/img/team/reiner.jpg +0 -0
  288. data/assets/img/team/scheepers.jpg +0 -0
  289. data/assets/img/team/scott.jpg +0 -0
  290. data/assets/img/team/ujeneza.jpg +0 -0
  291. data/assets/img/team/vanschalkwyk.jpg +0 -0
  292. data/assets/img/team/welte.jpg +0 -0
  293. data/assets/img/team/williams.jpg +0 -0
  294. data/assets/img/testimonial-bg.png +0 -0
  295. data/assets/img/transmission.png +0 -0
  296. data/assets/js/bootstrap.js +2363 -0
  297. data/assets/js/bootstrap.min.js +7 -0
  298. data/assets/js/jquery-2.1.1.min.js +4 -0
  299. data/assets/js/plugins/autohidingnavbar/jquery.bootstrap-autohidingnavbar.js +213 -0
  300. data/assets/js/plugins/autohidingnavbar/jquery.bootstrap-autohidingnavbar.min.js +9 -0
  301. data/assets/js/plugins/bootstrap-datepicker/bootstrap-datepicker.js +474 -0
  302. data/assets/js/plugins/bootstrap-multiselect/bootstrap-multiselect.js +994 -0
  303. data/assets/js/plugins/daterangepicker/daterangepicker.js +868 -0
  304. data/assets/js/plugins/easing/jquery.easing.js +205 -0
  305. data/assets/js/plugins/easing/jquery.easing.min.js +71 -0
  306. data/assets/js/plugins/fitvids/jquery.fitvids.js +83 -0
  307. data/assets/js/plugins/google-map/google-map.js +160 -0
  308. data/assets/js/plugins/isotope/isotope.pkgd.js +4049 -0
  309. data/assets/js/plugins/isotope/isotope.pkgd.min.js +8 -0
  310. data/assets/js/plugins/jquery-cycle/jquery.cycle.all.js +1543 -0
  311. data/assets/js/plugins/jquery-easypiechart/jquery.easypiechart.js +359 -0
  312. data/assets/js/plugins/jquery-easypiechart/jquery.easypiechart.min.js +9 -0
  313. data/assets/js/plugins/jquery-maskedinput/jquery.masked-input.js +338 -0
  314. data/assets/js/plugins/jquery-maskedinput/jquery.masked-input.min.js +7 -0
  315. data/assets/js/plugins/maximage/jquery.maximage.js +697 -0
  316. data/assets/js/plugins/maximage/jquery.maximage.min.js +4 -0
  317. data/assets/js/plugins/moment/moment.js +1662 -0
  318. data/assets/js/plugins/moment/moment.min.js +6 -0
  319. data/assets/js/plugins/parsley-validation/parsley.js +2074 -0
  320. data/assets/js/plugins/parsley-validation/parsley.min.js +9 -0
  321. data/assets/js/plugins/scrollto/jquery.localscroll-1.2.7-min.js +9 -0
  322. data/assets/js/plugins/scrollto/jquery.localscroll-1.2.7.js +133 -0
  323. data/assets/js/plugins/scrollto/jquery.scrollTo-1.4.3.1-min.js +7 -0
  324. data/assets/js/plugins/scrollto/jquery.scrollTo-1.4.3.1.js +218 -0
  325. data/assets/js/plugins/slick/slick.js +2643 -0
  326. data/assets/js/plugins/slick/slick.min.js +18 -0
  327. data/assets/js/plugins/stellar/jquery.stellar.js +660 -0
  328. data/assets/js/plugins/stellar/jquery.stellar.min.js +2 -0
  329. data/assets/js/repute-scripts.js +539 -0
  330. metadata +385 -0
@@ -0,0 +1,10 @@
1
+ ---
2
+ name: Gavin Hitchcock, PhD
3
+ type: founding
4
+ role: ICI3D Program Evaluator
5
+ position: Assistant Director for Training
6
+ affiliation: South African Centre for Epidemiological Modelling and Analysis
7
+ img: team/hitchcock.jpg
8
+ summary: Gavin is Assistant Director for Training at SACEMA, where he is responsible for all training workshops conducted by SACEMA and for the overall training and supervision of all SACEMA funded students throughout South Africa. He is also a mathematician and educator with long experience in University teaching and academic program design and management in Southern Africa. He has evaluated the MMED clinic and precursor programs since 2009, and all components of the ICI3D program since its inception in 2012.
9
+ bio: Gavin is Assistant Director for Training at SACEMA, where he is responsible for all training workshops conducted by SACEMA and for the overall training and supervision of all SACEMA-funded students throughout South Africa. He is a mathematician and educator with long experience in university teaching and academic program design and management in Southern Africa. Gavin received a Distinguished Teacher Award from the University of Zimbabwe in 2001. He has evaluated the MMED clinic and precursor programs since 2009, and all components of the ICI3D program since its inception in 2012. He also participates in the selection of African candidates for the MMED clinics and oversees the bursary selection process for SACEMA. He is a topologist by training and also works in the fields of History of Mathematics and Mathematics Education.
10
+ ---
@@ -0,0 +1,45 @@
1
+ ---
2
+ name: Thomas J. Hladish, PhD
3
+ type: workshop
4
+ role: Faculty Member, DAIDD 2022
5
+ involvement: Faculty Member, DAIDD clinic
6
+ position: Research Scientist
7
+ affiliation: University of Florida
8
+ img: team/hladish.jpg
9
+ summary: Dr. Hladish is a research scientist at the University of Florida, with affiliations in the Department of Biology and the Emerging Pathogens Institute. He received his PhD in Ecology, Evolution and Behavior from the University of Texas at Austin in 2012. He uses a range of modeling approaches to study spatiotemporal patterns of infectious disease transmission, and to design and predict the impact of intervention strategies.
10
+ icons: yes
11
+ github: tjhladish
12
+ orcid: 0000-0003-1819-6235
13
+ linkedin:
14
+ gscholar: Ncv6hnMAAAAJ
15
+ twitter:
16
+ impactstory:
17
+ website:
18
+ cv:
19
+ degrees:
20
+ - degree: PhD
21
+ discipline: Ecology, Evolution, and Behavior
22
+ institution: University of Texas at Austin
23
+ year: 2012
24
+ - degree: BS
25
+ discipline: Biology
26
+ institution: Illinois Wesleyan University
27
+ year: 2015
28
+ papers:
29
+ - title: Designing effective control of dengue with combined interventions
30
+ authors: <b>Hladish</b>, <b>Pearson</b>, Toh, Rojas, Mainrique-Saide, Vazquez-Propopec, Halloran, Longini
31
+ link: https://www.pnas.org/doi/full/10.1073/pnas.1903496117
32
+ journal: PNAS
33
+ year: 2020
34
+ - title: The long-term safety, public health impact, and cost-effectiveness of routine vaccination with a recombinant, live-attenuated dengue vaccine (Dengvaxia) - a model comparison study
35
+ authors: Flasche, Jit, Rodríguez-Barraquer, Coudeville, Recker, Koelle, Milne, <b>Hladish</b>, Perkins, Cummings, Dorigatti, Laydon, España, Kelso, Longini, Lourenco, <b>Pearson</b>, Reiner, Mier-y-Terán-Romero, Vannice, Ferguson
36
+ link: http://journals.plos.org/plosmedicine/article?id=10.1371/journal.pmed.1002181
37
+ journal: PLoS Medicine
38
+ year: 2017
39
+ - title: Projected impact of dengue vaccination in Yucatán, Mexico
40
+ authors: <b>Hladish</b>, <b>Pearson</b>, Chao, Rojas, Recchia, Gómez-Dantés, M Halloran, <b>Pulliam</b>, Longini
41
+ link: http://journals.plos.org/plosntds/article?id=10.1371/journal.pntd.0004661
42
+ journal: PLOS Neglected Tropical Diseases
43
+ year: 2016
44
+ bio: Dr. Hladish is a research scientist at the University of Florida, with affiliations in the Department of Biology and the Emerging Pathogens Institute. He received his PhD in Ecology, Evolution and Behavior from the University of Texas at Austin in 2012. He uses a range of modeling approaches to study spatiotemporal patterns of infectious disease transmission, and to design and predict the impact of intervention strategies.
45
+ ---
@@ -0,0 +1,9 @@
1
+ ---
2
+ name: Rene January
3
+ type: admin
4
+ role: AIMS-ICI3D Coordinator
5
+ position: Research Administrative Officer
6
+ affiliation: African Institute for Mathematical Sciences, South Africa (AIMS-SA)
7
+ img: team/january.jpg
8
+ summary: Rene is a Research Administrative Officer for the African Institute for Mathematical Sciences in South Africa. She oversees local logistics for the MMED clinic, which is held at AIMS in Muizenberg.
9
+ ---
@@ -0,0 +1,20 @@
1
+ ---
2
+ name: Reshma Kassanjee, PhD
3
+ type: workshop
4
+ role: Faculty Member, DAIDD 2019, MMED 2021
5
+ involvement: Faculty Member, MMED and DAIDD clinics
6
+ position: Senior Research Officer
7
+ affiliation: Centre for Infectious Disease Epidemiology and Research (CIDER)<br>University of Cape Town
8
+ img: mentors/kassanjee.jpg
9
+ degrees:
10
+ - degree: PhD
11
+ discipline: Computational and Applied Mathematics
12
+ institution: Wits University
13
+ year: 2014
14
+ - degree: BSc (Hons)
15
+ discipline: Statistics
16
+ institution: Wits University
17
+ year: 2007
18
+ bio: Dr Reshma Kassanjee Senior Research Officer at Centre for Infectious Disease Epidemiology and Research (CIDER), University of Cape Town. With a background in statistics and computational mathematics, she has worked in a wide variety of application areas, but is most passionate about their contribution to public health.
19
+
20
+ ---
data/_data/team/li.yml ADDED
@@ -0,0 +1,45 @@
1
+ ---
2
+ name: Michael Li, PhD
3
+ type: workshop
4
+ role: Faculty Member, DAIDD 2021-2022
5
+ involvement: Faculty Member, DAIDD clinic
6
+ position: Senior Scientist
7
+ affiliation: Public Health Risk Science Division<br>Public Health Agency of Canada
8
+ img: team/li.jpg
9
+ summary: Michael is a scientist in the Public Health Risk Science division at the Public Health Agency of Canada (PHAC). He is a theoretical/computational infectious disease modeler.
10
+ icons: yes
11
+ github: wzmli
12
+ gscholar: 9PjVipUAAAAJ
13
+ twitter: MLiwz1
14
+ cv:
15
+ degrees:
16
+ - degree: PhD
17
+ discipline: Biology
18
+ institution: McMaster University
19
+ year: 2019
20
+ - degree: MSc
21
+ discipline: Statistics
22
+ institution: McMaster University
23
+ year: 2015
24
+ - degree: Hon BSc
25
+ discipline: Mathematics and Statistics
26
+ institution: University of Toronto
27
+ year: 2013
28
+ papers:
29
+ - title: Patterns of seasonal and pandemic influenza-associated health care and mortality in Ontario, Canada
30
+ authors: <b>Li</b>, Bolker, <b>Dushoff</b>, Ma, Earn
31
+ link: https://doi.org/10.1186/s12889-019-7369-x
32
+ journal: BMC Public Health
33
+ year: 2019
34
+ - title: Fitting mechanistic epidemic models to data - A comparison of simple Markov chain Monte Carlo approaches
35
+ authors: <b>Li</b>, <b>Dushoff</b>, Bolker
36
+ link: https://doi.org/10.1177/0962280217747054
37
+ journal: Statistical Methods in Medical Research
38
+ year: 2018
39
+ - title: Two approaches to forecast Ebola synthetic epidemics
40
+ authors: Champredon, <b>Li</b>, Bolker, <b>Dushoff</b>
41
+ link: https://www.ncbi.nlm.nih.gov/pubmed/28325495
42
+ journal: Epidemics
43
+ year: 2017
44
+ bio: Michael is a scientist in the Public Health Risk Science division at the Public Health Agency of Canada (PHAC). He is a theoretical/computational infectious disease modeler. He focuses on human-related diseases (COVID-19, influenza, and HIV) and some wildlife diseases (canine rabies), especially in forecasting epidemic outbreaks, retrospective analysis of the evolution of infectious diseases, and intervention strategies/policies for disease control. In addition, Michael has a broad research interest in theoretical and applied statistics, mathematical biology, ecology & evolution, public health, and computations.
45
+ ---
@@ -0,0 +1,20 @@
1
+ ---
2
+ name: Jennifer Lord
3
+ type: i3d_toAfrica
4
+ role: I3D Research Exchange Scholar
5
+ home: England
6
+ former: Courtesy Postdoctoral Fellow, University of Florida
7
+ position: Postdoctoral researcher
8
+ affiliation: Liverpool School of Tropical Medicine
9
+ img: scholars/lord.jpg
10
+ year: 2016
11
+ host: South African Centre for Epidemiological Modelling and Analysis
12
+ mentor: Prof. John Hargrove
13
+ project: modeling environmental impacts on tsetse fly population dynamics
14
+ outputs:
15
+ - title: Host-seeking efficiency can explain population dynamics of the tsetse fly <em>Glossina morsitans morsitans</em> in response to host density decline
16
+ authors: <em>Lord, JS</em>, <em>Z Mthombothi</em>, <em>VK Lagat</em>, <em>F Atuhaire</em>, and <b>JW Hargrove</b>
17
+ link: https://doi.org/10.1371/journal.pntd.0005730
18
+ journal: PLoS Neglected Tropical Diseases
19
+ year: 2017
20
+ ---
@@ -0,0 +1,14 @@
1
+ ---
2
+ name: Florian Marx
3
+ type: i3d_toAfrica
4
+ role: I3D Research Exchange Scholar
5
+ home: Germany
6
+ former: Postdoctoral researcher, Brigham and Women's Hospital and Harvard Medical School
7
+ position: Researcher
8
+ affiliation: Desmond Tutu TB Centre, Stellenbosch University, South Africa
9
+ img: scholars/marx.jpg
10
+ year: 2016
11
+ host: South African Centre for Epidemiological Modelling and Analysis
12
+ mentor: Dr. Brian Williams
13
+ project: assessing the cost effectiveness of two TB interventions in high-risk populations - isoniazid preventive therapy and targeted active case finding
14
+ ---
@@ -0,0 +1,20 @@
1
+ ---
2
+ name: Avery McIntosh
3
+ type: i3d_toAfrica
4
+ role: I3D Research Exchange Scholar
5
+ home: USA
6
+ former: PhD student in Biostatistics, Boston University
7
+ position: Principal Biostatistician
8
+ affiliation: Novartis Institutes for BioMedical Research
9
+ img: scholars/mcintosh.jpg
10
+ year: 2016
11
+ host: South African Centre for Epidemiological Modelling and Analysis
12
+ mentor: Prof. Alex Welte
13
+ project: developing tools and integrating methods for HIV incidence estimation
14
+ outputs:
15
+ - title: <em>inctools</em> - Incidence Estimation Tools (R package)
16
+ authors: <b>Welte, A</b>, E Grebe, <em>A McIntosh</em>, P Bäumler, and S Ongarello
17
+ link: https://CRAN.R-project.org/package=inctools
18
+ journal: The Comprehensive R Archive Network
19
+ year: 2016
20
+ ---
@@ -0,0 +1,22 @@
1
+ ---
2
+ name: Laurette Mhlanga, MSc
3
+ type: mentor
4
+ role: Mentor
5
+ img: mentors/mhlanga.jpg
6
+ position: PhD candidate, South African Centre for Epidemiological Modelling and Analysis
7
+ affiliation: Stellenbosch University, Stellenbosch, South Africa
8
+ degrees:
9
+ - degree: MSc
10
+ discipline: Mathematical Sciences
11
+ institution: AIMS-Tanzania
12
+ year: 2016
13
+ - degree: MSc
14
+ discipline: Operations Research
15
+ institution: NUST – Zimbabwe
16
+ year: 2013
17
+ - degree: BSc
18
+ discipline: Statistics
19
+ institution: University of Zimbabwe
20
+ year:
21
+ bio: Laurette Mhlanga is PhD student at SACEMA, enrolled in the Department of Global Health at Stellenbosch University. She holds an MSc in Mathematical Sciences from AIMS Tanzania, MSc in Operations Research from NUST – Zimbabwe, a double major in Statistics and Biochemistry plus BSc special honors in Statistics, both from the University of Zimbabwe. Currently, she is working under the supervision of Prof Alex Welte on a project that involves the construction of a comprehensive survey analysis benchmarking platform and developing guidance on the primary challenges of data smoothing faced by surveys intending to estimate HIV incidence.
22
+ ---
@@ -0,0 +1,23 @@
1
+ ---
2
+ name: Zinhle Mthombothi, MSc
3
+ type: workshop
4
+ role: Faculty Member, MMED 2019, DAIDD 2020, MMED 2021
5
+ involvement: Faculty Member, MMED and DAIDD clinics
6
+ img: team/mthombothi.jpg
7
+ position: Junior Researcher
8
+ affiliation: South African Centre for Epidemiological Modelling and Analysis<br>Stellenbosch University, Stellenbosch, South Africa
9
+ degrees:
10
+ - degree: MSc
11
+ discipline: Mathematics
12
+ institution: Stellenbosch University
13
+ year: 2018
14
+ - degree: Structured Masters
15
+ discipline: Mathematical Sciences
16
+ institution: African Institute for Mathematical Sciences
17
+ year: 2015
18
+ - degree: BSc (Hons)
19
+ discipline: Mathematics
20
+ institution: Rhodes University
21
+ year: 2014
22
+ bio: Zinhle Mthombothi is a Junior Researcher at SACEMA. She received an MSc (Mathematical Sciences) from Stellensbosch University in 2018. Her thesis, titled "Modelling the effects of temperature change on the population dynamics of tsetse flies and trypanosomiasis transmission", was supervised by Prof. John W. Hargrove and Dr. Rachid Ouifki. In 2015 she obtained a Structured Master’s degree in Mathematical Sciences at the African Institute for Mathematical Sciences South Africa (AIMS-SA). She also holds a BSc degree in Mathematics and Chemistry, and a BSc Honours degree in Mathematics which were both obtained at Rhodes University in the years 2013 and 2014 respectively.
23
+ ---
@@ -0,0 +1,18 @@
1
+ ---
2
+ name: Tendai Mugwagwa, PhD
3
+ type: observer
4
+ role: Faculty Observer
5
+ involvement: Faculty Observer, MMED 2019
6
+ position: Senior Infectious Disease Modeller
7
+ affiliation: Public Health England
8
+ img: team/mugwagwa.jpg
9
+ summary: Dr Tendai Mugwagwa is a senior infectious disease modeller and health economist at Public Health England (PHE). She is also a visiting Research fellow at Imperial College, London. Tendai graduated from AIMS in 2004 and went on to pursue her passion for health sciences. She obtained a Master’s in Applied Mathematics from the University of Cape Town in 2005. She went on to obtain a PhD in Theoretical Immunology from Utrecht University in the Netherlands in 2010. Tendai spent her postdoctoral fellowship years at the University of Rochester medical centre, USA and Imperial College London, UK were her research covered within host and population level mathematical models of HIV, Influenza A, TB and HCV. She joined PHE in 2013 where she now integrates infectious disease models with health economic models to provide policy makers with evidence for public health decisions. Her current focus is on TB epidemiology with particular focus on social groups with limited access to health care.
10
+ github:
11
+ orcid:
12
+ linkedin:
13
+ gscholar:
14
+ twitter:
15
+ impactstory:
16
+ website:
17
+ cv:
18
+ ---
@@ -0,0 +1,24 @@
1
+ ---
2
+ name: Thumbi Mwangi, PhD
3
+ type: director
4
+ role: ICI3D Co-Director
5
+ role.old: Faculty Member, MMED 2019, 2021, DAIDD 2021
6
+ involvement: Faculty Member, MMED and DAIDD clinics
7
+ img: team/mwangi.png
8
+ position: Wellcome Trust Fellow
9
+ affiliation: Center for Global Health Research, Kenya Medical Research Institute<br>Paul G Allen School for Global Animal Health, Washington State University
10
+ degrees:
11
+ - degree: PhD
12
+ discipline: Infectious disease epidemiology
13
+ institution: University of Edinburgh
14
+ year: 2012
15
+ - degree: MSc
16
+ discipline: Genetics and Animal Breeding
17
+ institution: University of Nairobi
18
+ year: 2008
19
+ - degree: BVM
20
+ discipline: Veterinary Medicine and Surgery
21
+ institution: University of Nairobi
22
+ year: 2005
23
+ bio: Thumbi Mwangi is a Wellcome Trust fellow at the Center for Global Health Research, Kenya Medical Research Institute, a clinical assistant professor at the Paul G Allen School for Global Animal Health, Washington State University. His research is on linkages between human and animal health, focusing on surveillance, burden estimation, transmission dynamics, and control of zoonotic infectious diseases – including leading implementation research for rabies elimination in Kenya. He received his doctoral training in infectious disease epidemiology from the University of Edinburgh, Masters of Science and Veterinary Medicine and Surgery degrees from the University of Nairobi, Kenya.
24
+ ---
@@ -0,0 +1,20 @@
1
+ ---
2
+ name: Ernest Mwebaze
3
+ type: i3d_toNA
4
+ role: I3D Research Exchange Scholar
5
+ home: Uganda
6
+ former: PhD student at Makerere University in Uganda
7
+ position: Lecturer
8
+ affiliation: School of Computing & IT, Makerere University
9
+ img: scholars/mwebaze.jpg
10
+ year: 2014
11
+ host: University of California – San Francisco (UCSF)
12
+ mentor: Prof. Travis Porco
13
+ project: using partially observed Markov Processes as an inference tool for infectious disease dynamics
14
+ outputs:
15
+ - title: Evaluating subcriticality during the Ebola epidemic in West Africa
16
+ authors: Enanoria WTA, L Worden, F Liu, D Gao, <em>S Ackley</em>, <b>JC Scott</b>, M Deiner, <em>E Mwebaze</em>, W Ip, TM Lietman, and <b>TC Porco</b>
17
+ link: http://dx.doi.org/10.1371/journal.pone.0140651
18
+ journal: PLOS ONE
19
+ year: 2015
20
+ ---
@@ -0,0 +1,18 @@
1
+ ---
2
+ name: Wilfred Ndifon, PhD
3
+ type: inactive
4
+ role: Faculty Member, MMED 2015
5
+ involvement: Faculty Member, MMED clinic
6
+ position: Joint AIMS Career Development Research Chair in Quantitative Immunology and Bioinformatics
7
+ affiliation: African Institute for Mathematical Sciences (AIMS-Ghana &amp; AIMS-South Africa)
8
+ img: team/ndifon.jpg
9
+ summary: Wilfred holds a Joint AIMS Career Development Research Chair in Quantitative Immunology and Bioinformatics at the African Institute for Mathematical Sciences in Ghana and South Africa. He joined the Workshop Faculty in 2015.
10
+ github: ndifon
11
+ orcid:
12
+ linkedin: wilfred-ndifon-39a77570
13
+ gscholar: T7leliwAAAAJ
14
+ twitter:
15
+ impactstory:
16
+ website: http://nef.org/meet-nef-fellows/wilfred-ndifon/
17
+ cv:
18
+ ---
@@ -0,0 +1,30 @@
1
+ ---
2
+ name: Calistus Ngonghala, PhD
3
+ type: inactive
4
+ role: Faculty Member, MMED 2016-2017
5
+ involvement: Faculty Member, MMED clinic
6
+ position: Assistant Professor, Department of Mathematics
7
+ affiliation: University of Florida, Gainesville, FL, USA
8
+ img: team/ngonghala.jpg
9
+ summary: Calistus is an Assistant Professor of Mathematics at the University of Florida in Gainesville, FL, USA. He was an MMED participant in 2010 and joined the Workshop Faculty in 2016.
10
+ github: cnngonghala
11
+ orcid:
12
+ linkedin: calistus-ngonghala-ph-d-59742437
13
+ gscholar: -l6fPTcAAAAJ
14
+ twitter:
15
+ impactstory:
16
+ website:
17
+ cv:
18
+ bio: Calistus is an Assistant Professor of Mathematical Biology in the Department of Mathematics and Emerging Pathogens Institute (EPI) at the University of Florida in Gainesville, FL, USA. He was an MMED participant in 2010 and joined the Workshop Faculty in 2016. His research focuses on developing mathematical frameworks of coupled natural-human systems to understand the ecology of poverty from the perspective of infectious disease dynamics, agriculture (renewable resources), environmental (land-use) change and socio-economic conditions.
19
+ papers:
20
+ - title: Economic inequality caused by feedbacks between poverty and the dynamics of a rare tropical disease - the case of Buruli ulcer in Sub-Saharan Africa
21
+ authors: Garchitorena, <b>Ngonghala</b>, Guegan, Texier, Bellanger, Roche, Bonds
22
+ link: http://rspb.royalsocietypublishing.org/content/282/1818/20151426
23
+ journal: Proceedings of Royal Society B (Biological Sciences)
24
+ year: 2015
25
+ - title: Poverty, disease, and the ecology of complex systems
26
+ authors: <b>Ngonghala</b>, Plucinski, Murray, Farmer, Barrett, Keenan, Bonds
27
+ link: http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.1001827
28
+ journal: PLoS Biology
29
+ year: 2014
30
+ ---
@@ -0,0 +1,14 @@
1
+ ---
2
+ name: Joseph Nondi
3
+ type: i3d_toNA
4
+ role: I3D Research Exchange Scholar
5
+ home: Tanzania
6
+ former: Researcher, Ministry of Health and Social Welfare, Tanzania
7
+ position: Researcher
8
+ affiliation: Ministry of Health and Social Welfare, Tanzania
9
+ img: scholars/nondi.jpg
10
+ year: 2015
11
+ host: McMaster University
12
+ mentor: Prof. Jonathan Dushoff
13
+ project: evaluating care and treatment of pediatric HIV in Tanzania
14
+ ---
@@ -0,0 +1,18 @@
1
+ ---
2
+ name: Mutono Nyamai, MSc
3
+ type: mentor
4
+ role: Mentor
5
+ img: mentors/nyamai.png
6
+ position: PhD candidate
7
+ affiliation: Center for Epidemiological Modelling and Analysis<br>University of Nairobi
8
+ degrees:
9
+ - degree: MSc
10
+ discipline: Environmental Governance
11
+ institution: University of Nairobi
12
+ year: 2016
13
+ - degree: Bachelor
14
+ discipline: Business Information and Technology
15
+ institution: Strathmore University
16
+ year: 2013
17
+ bio: Mutono is a PhD candidate working under the supervision of Prof. Thumbi Mwangi. She has a PhD fellowship at the University of Nairobi and at the Washington State University Global Health Program in Kenya. Her PhD research focuses on urban water supply and demand and how these relate to health outcomes (water-borne diseases) in the City of Nairobi. She has a keen interest in data analytics and epidemiological modelling as applied to infectious diseases and is currently undertaking a part-time MSc in Data Analytics at the University of Glasgow. Her MSc project focuses on the use of Bayesian models to understand the spread of COVID-19 in Nairobi. She is interested in growing her skills in the use of mathematical modelling in developing prevention and control strategies for infectious diseases in Africa.
18
+ ---
@@ -0,0 +1,9 @@
1
+ ---
2
+ name: Amanda October
3
+ type: inactiveadmin
4
+ role: SACEMA-ICI3D Coordinator
5
+ position: Administrative Officer
6
+ affiliation: South African Centre for Epidemiological Modelling and Analysis
7
+ img: team/october.jpg
8
+ summary: Amanda is the SACEMA administrator and one of SACEMA's ICI3D coordinators. She coordinates logistical aspects of the program for African participants and assists with local logistics for the MMED clinic.
9
+ ---
@@ -0,0 +1,19 @@
1
+ ---
2
+ name: Masimba Paradza, MSc
3
+ type: evaluator
4
+ role: ICI3D Program Evaluator
5
+ position: Training Coordinator
6
+ affiliation: South African Centre for Epidemiological Modelling and Analysis
7
+ img: team/paradza.jpg
8
+ summary: Masimba is the Training Coordinator at SACEMA, where he is responsible for overseeing all training activities. He is also a PhD Candidate in Physics at University of Cape Town. From February 2012- May 2018, he coordinated the MSc programmes in Material Science and Nuclear Sciences at University of the Western Cape. He joined the ICI3D evalutation team at MMED 2018 and will take over full evaluation responsibilities in 2019.
9
+ bio: Masimba is the Training Coordinator at SACEMA, where he is responsible for overseeing all training activities. He is also a PhD Candidate in Physics at University of Cape Town. From February 2012- May 2018, he coordinated the MSc programmes in Material Science and Nuclear Sciences at University of the Western Cape. He joined the ICI3D evalutation team at MMED 2018 and will take over full evaluation responsibilities in 2019.
10
+ degrees:
11
+ - degree: PhD
12
+ discipline: Physics
13
+ institution: University of Cape Town
14
+ year: in progress
15
+ - degree: MSc
16
+ discipline: Physics
17
+ institution: Rhodes University and University of Cape Town
18
+ year: 2008
19
+ ---
@@ -0,0 +1,58 @@
1
+ ---
2
+ name: Carl Pearson, MSES, PhD
3
+ type: workshop
4
+ role: Faculty Member, DAIDD 2016-2020, MMED 2018, 2021
5
+ involvement: Faculty Member, MMED and DAIDD clinics
6
+ position: Research Fellow
7
+ affiliation: London School of Hygiene & Tropical Medicine<br>London, United Kingdom
8
+ img: team/pearson.jpg
9
+ summary: Carl is a Research Fellow at the London School of Hygiene & Tropical Medicine, focusing on Ebola. He is also affiliated with SACEMA. He was a Faculty Observer at MMED 2015 and joined the Workshop Faculty in 2016.
10
+ github: pearsonca
11
+ orcid: 0000-0003-0701-7860
12
+ linkedin:
13
+ gscholar: XKRJAXwAAAAJ
14
+ twitter: cap1024
15
+ impactstory:
16
+ website:
17
+ cv:
18
+ degrees:
19
+ - degree: PhD
20
+ discipline: Physics
21
+ institution: The George Washington University
22
+ year: 2012
23
+ - degree: MSES
24
+ discipline: Mechincal Engineering
25
+ institution: The Naval Post Graduate School
26
+ year: 2006
27
+ - degree: BS
28
+ discipline: Mathematics & Physics
29
+ institution: Duke University
30
+ year: 2003
31
+ papers:
32
+ - title: Pre-vaccination testing could expand coverage of two-dose COVID vaccines
33
+ authors: <b>Pearson</b>, Clifford, <b>Pulliam</b>, Eggo
34
+ link: https://wellcomeopenresearch.org/articles/6-105
35
+ journal: Wellcome Open Research
36
+ year: 2021
37
+ - title: Projected early spread of COVID-19 in Africa through 1 June 2020
38
+ authors: <b>Pearson</b>, <b>van Schalkwyk</b>, Foss, O’Reilly, SACEMA Modelling and Analysis Response Team, CMMID COVID-19 Working Group, <b>Pulliam</b>
39
+ link: https://www.eurosurveillance.org/content/10.2807/1560-7917.ES.2020.25.18.2000543
40
+ journal: Eurosurveillance
41
+ year: 2020
42
+ - title: Serostatus testing and dengue vaccine cost–benefit thresholds
43
+ authors: <b>Pearson</b>, Abbas, Clifford, Flasche, <b>Hladish</b>
44
+ link: https://royalsocietypublishing.org/doi/pdf/10.1098/rsif.2019.0234
45
+ journal: Journal of the Royal Society Interface
46
+ year: 2019
47
+ - title: The long-term safety, public health impact, and cost-effectiveness of routine vaccination with a recombinant, live-attenuated dengue vaccine (Dengvaxia) - a model comparison study
48
+ authors: Flasche, Jit, Rodríguez-Barraquer, Coudeville, Recker, Koelle, Milne, <b>Hladish</b>, Perkins, Cummings, Dorigatti, Laydon, España, Kelso, Longini, Lourenco, <b>Pearson</b>, Reiner, Mier-y-Terán-Romero, Vannice, Ferguson
49
+ link: http://journals.plos.org/plosmedicine/article?id=10.1371/journal.pmed.1002181
50
+ journal: PLoS Medicine
51
+ year: 2017
52
+ - title: Projected impact of dengue vaccination in Yucatán, Mexico
53
+ authors: <b>Hladish</b>, <b>Pearson</b>, Chao, Rojas, Recchia, Gómez-Dantés, M Halloran, <b>Pulliam</b>, Longini
54
+ link: http://journals.plos.org/plosntds/article?id=10.1371/journal.pntd.0004661
55
+ journal: PLOS Neglected Tropical Diseases
56
+ year: 2016
57
+ bio: Carl is a Research Fellow at the London School of Hygiene & Tropical Medicine, focusing on Ebola. He is also affiliated with SACEMA. He was a Faculty Observer at MMED 2015 and joined the Workshop Faculty in 2016.
58
+ ---
@@ -0,0 +1,14 @@
1
+ ---
2
+ name: Travis Porco, MPH, PhD
3
+ type: founding
4
+ role: Faculty Member, MMED and DAIDD clinics
5
+ involvement: Faculty Member, MMED and DAIDD clinics
6
+ position: Professor
7
+ affiliation: Department of Epidemiology and Biostatistics<br>Department of Ophthalmology<br>Francis I Proctor Institute for Research in Ophthalmology<br>University of California – San Francisco, San Francisco, CA, USA
8
+ img: team/porco.jpg
9
+ summary: Travis is a Professor of Epidemiology and Biostatistics at the Francis I Proctor Institute for Research in Ophthalmology at University of California – San Francisco. He has been on the ICI3D Core Faculty since the program started in 2012.
10
+ github: tcporco
11
+ website: https://proctor.ucsf.edu/faculty/porco
12
+ bio: Travis is a Professor in the Department of Epidemiology and Biostatistics and the Department of Ophthalmology at the University of California, San Francisco (UCSF). Prior to joining the faculty at UCSF, he was Senior Epidemiologist in the Surveillance and Epidemiology Section of the California state Tuberculosis Control Branch. His doctoral degree is in Biophysics from the University of California, Berkeley. Travis’s research includes agent-based simulation of contact investigation as a means for disease control, and applying mathematical models of disease transmission to clinical trials for controlling trachoma (with Prof. Tom Lietman). He has worked on mathematical models of tuberculosis, smallpox, herpes simplex, influenza, HIV, and measles.
13
+
14
+ ---
@@ -0,0 +1,51 @@
1
+ ---
2
+ name: Juliet Pulliam, PhD
3
+ type: director
4
+ role: ICI3D Co-Director
5
+ role.old: ICI3D Co-Director<br>Program Director for Africa
6
+ involvement: Faculty Member, MMED and DAIDD clinics
7
+ position: Director of <a href="http://www.sacema.org/">SACEMA</a> & Professor of Applied Mathematics
8
+ affiliation: South African Centre for Epidemiological Modelling and Analysis<br>Stellenbosch University, Stellenbosch, South Africa
9
+ img: team/pulliam.jpg
10
+ summary: Juliet is the Director of the South African Centre for Epidemiological Modelling and Analysis (SACEMA) and Professor of Applied Mathematics at Stellenbosch University. She served as Program Director from 2012-2016, Program Director for Africa from 2017-2022, and is currently on the ICI3D Executive Team.
11
+ icons: yes
12
+ github: jrcpulliam
13
+ orcid: 0000-0003-3314-8223
14
+ linkedin: julietpulliam
15
+ gscholar: N9CMMiQAAAAJ
16
+ twitter: SACEMAdirector
17
+ impactstory: SACEMAdirector
18
+ link: http://jrcpulliam.github.io
19
+ cv: https://dl.dropbox.com/u/40277704/PulliamCV.pdf?dl=1
20
+ degrees:
21
+ - degree: PhD
22
+ discipline: Ecology and Evolutionary Biology
23
+ institution: Princeton University
24
+ year: 2007
25
+ - degree: BA
26
+ discipline: Biology
27
+ institution: Duke University
28
+ year: 2002
29
+ papers:
30
+ - title: Detecting differential transmissibilities that affect the size of self-limited outbreaks
31
+ authors: Blumberg, Funk, <b>Pulliam</b>
32
+ link: http://www.plospathogens.org/article/info%3Adoi%2F10.1371%2Fjournal.ppat.1004452
33
+ journal: PLoS Pathogens
34
+ year: 2014
35
+ - title: Sampling design influences the observed dominance of <em>Culex tritaeniorhynchus</em> - considerations for future studies of Japanese encephalitis virus transmission
36
+ authors: Lord, Al-Amin, Chakma, Alam, Gurley, <b>Pulliam</b>
37
+ link: http://journals.plos.org/plosntds/article?id=10.1371/journal.pntd.0004249
38
+ journal: PLOS Neglected Tropical Diseases
39
+ year: 2016
40
+ - title: Agricultural intensification, priming for persistence, and the emergence of Nipah virus, a lethal bat-borne zoonosis
41
+ authors: <b>Pulliam</b>, Epstein, <b>Dushoff</b>, Rahman, Bunning, Jamaluddin, Hyatt, Field, Dobson, Daszak, and the Henipavirus Ecology Research Group
42
+ link: http://dx.doi.org/10.1098/rsif.2011.0223
43
+ journal: Journal of the Royal Society Interface
44
+ year: 2012
45
+ - title: Increased risk of SARS-CoV-2 reinfection associated with emergence of Omicron in South Africa
46
+ authors: <b>Pulliam</b>, <b>van Schalkwyk</b>, Govender, von Gottberg, Cohen, Groome, <b>Dushoff</b>, Mlisana, and Moultrie
47
+ link: http://dx.doi.org/10.1126/science.abn4947
48
+ journal: Science
49
+ year: 2022
50
+ bio: Juliet is Director of the South African DSI-NRF Centre of Excellence in Epidemiological Modelling and Analysis (SACEMA) and Professor of Applied Mathematics at Stellenbosch University (SU). She served as the inaugural ICI3D Program Director from 2012-2016 and is a member of the ICI3D Executive Team. Before moving to SACEMA in 2016, she was an Assistant Professor in the Department of Biology and Emerging Pathogens Institute (EPI) at the University of Florida (2011-2016) and a Research and Policy for Infectious Disease Dynamics (RAPIDD) Program Fellow in the Division of International Epidemiology and Population Studies at the Fogarty International Center, NIH (2008-2011). Juliet’s research focuses on quantitative approaches to infectious disease dynamics, with a particular focus on emerging, vector-borne, and zoonotic viruses, including Ebola, Nipah, Japanese encephalitis, dengue, and SARS-CoV-2 viruses.
51
+ ---
@@ -0,0 +1,18 @@
1
+ ---
2
+ name: Bobby Reiner, PhD
3
+ type: workshop
4
+ role: Faculty Member, MMED 2021, DAIDD 2021
5
+ involvement: Faculty Member, MMED and DAIDD clinics
6
+ position: Associate Professor of Health Metrics Sciences
7
+ affiliation: Institute for Health Metrics and Evaluation <br> University of Washington, Seattle, Washington, USA
8
+ img: team/reiner.jpg
9
+ summary: Bobby is an Associate Professor of Health Metrics Sciences in the School of Medicine at the University of Washington. He is a Disease Ecologist and combines his extensive background in Applied Mathematics, Statistics and Probability with postdoctoral training in mathematical ecology, epidemiology and entomology, to model infectious diseases. He feels strongly that a reasonably thorough understanding of the biology of the system in question is needed to optimally function as a modeler (too frequently, models of biological systems are mathematically interesting but biologically impossible). On the other hand, real-world data are often incompatible with straightforward analysis and instead require non-standard, bespoke approaches for which a background in mathematics, probability, and statistics is invaluable.<br><br>Bobby has a diverse array of interests, most concerning the role and drivers of spatio-temporal variation in infectious disease transmission dynamics. Currently his focus is on drivers of temporal variation (both seasonal and inter-annual variation) in incidence. Additionally, from a more methodological standpoint, I am interested in developing novel modeling frameworks to assess questions of interest that are designed to incorporate and leverage 'individual-level' data related to infectious diseases.
10
+ github:
11
+ orcid:
12
+ linkedin:
13
+ gscholar:
14
+ twitter:
15
+ impactstory:
16
+ website:
17
+ cv:
18
+ ---
@@ -0,0 +1,9 @@
1
+ ---
2
+ name: Lynnemore Scheepers
3
+ type: admin
4
+ role: SACEMA-ICI3D Coordinator
5
+ position: Research Manager
6
+ affiliation: South African Centre for Epidemiological Modelling and Analysis
7
+ img: team/scheepers.jpg
8
+ summary: Lynnemore is the SACEMA Research Manager and one of SACEMA's ICI3D coordinators. She assists with financial and administrative aspects of the program.
9
+ ---
@@ -0,0 +1,51 @@
1
+ ---
2
+ name: Jim Scott, MPH, PhD
3
+ type: core
4
+ role: Faculty Member, MMED and DAIDD clinics
5
+ position: Associate Professor of Statistics
6
+ affiliation: Department of Mathematics and Statistics<br>Colby College, Waterville, ME, USA
7
+ img: team/scott.jpg
8
+ summary: Jim is an Associate Professor of Statistics in the Department of Mathematics and Statistics at Colby College. He has been on the ICI3D Core Faculty since the program started in 2012.
9
+ github: jcscott73
10
+ orcid:
11
+ linkedin:
12
+ gscholar:
13
+ twitter:
14
+ impactstory:
15
+ website: http://www.colby.edu/directory_cs/jcscott/
16
+ cv:
17
+ degrees:
18
+ - degree: PhD
19
+ discipline: Epidemiology
20
+ institution: UC Berkeley
21
+ year: 2007
22
+ - degree: MA
23
+ discipline: Biostatistics
24
+ institution: UC Berkeley
25
+ year: 2004
26
+ - degree: MPH
27
+ discipline: Public Health
28
+ institution: UC Berkeley
29
+ year: 2001
30
+ - degree: BA
31
+ discipline: Mathematics
32
+ institution: Macalester College
33
+ year: 1996
34
+ papers:
35
+ - title: Cost resulting from anti-tuberculosis drug shortages in the United States - a hypothetical cohort study
36
+ authors: <b>Scott JC</b>, Shah N, <b>Porco TC</b>, Flood J
37
+ link: http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0134597
38
+ journal: PLoS ONE
39
+ year: 2015
40
+ - title: In-roads to the spread of antibiotic resistance - regional patterns of microbial transmission in northern coastal Ecuador
41
+ authors: Eisenberg JNS, Goldstick J, Cevallos W, Trueba G, Levy K, <b>Scott JC</b>, Percha B, Segovia R, Ponce K, Hubbard A, Marrs C, Foxman B, Smith DL, Trostle J
42
+ link: http://rsif.royalsocietypublishing.org/content/9/70/1029
43
+ journal: Journal of the Royal Society Interface
44
+ year: 2011
45
+ - title: Integrating public health control strategies - Balancing water, sanitation, and hygiene interventions to reduce diarrheal disease burden
46
+ authors: Eisenberg JNS, <b>Scott JC</b>, <b>Porco TC</b>
47
+ link: https://www.ncbi.nlm.nih.gov/pubmed/17267712
48
+ journal: American Journal of Public Health
49
+ year: 2007
50
+ bio: Jim is an Associate Professor of Statistics in the Department of Mathematics and Statistics at Colby College. He has worked as a computer programmer, an epidemiologist for the State of California, and a research associate at the University of California, Berkeley. His research has focused on causal inference and on transmission of infectious diseases including HIV, tuberculosis, and water-borne pathogens.
51
+ ---