isotree 0.2.2 → 0.3.1

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Files changed (152) hide show
  1. checksums.yaml +4 -4
  2. data/CHANGELOG.md +12 -1
  3. data/LICENSE.txt +2 -2
  4. data/README.md +32 -14
  5. data/ext/isotree/ext.cpp +144 -31
  6. data/ext/isotree/extconf.rb +7 -7
  7. data/lib/isotree/isolation_forest.rb +110 -30
  8. data/lib/isotree/version.rb +1 -1
  9. data/vendor/isotree/LICENSE +1 -1
  10. data/vendor/isotree/README.md +165 -27
  11. data/vendor/isotree/include/isotree.hpp +2116 -0
  12. data/vendor/isotree/include/isotree_oop.hpp +394 -0
  13. data/vendor/isotree/inst/COPYRIGHTS +132 -0
  14. data/vendor/isotree/src/RcppExports.cpp +594 -57
  15. data/vendor/isotree/src/Rwrapper.cpp +2452 -304
  16. data/vendor/isotree/src/c_interface.cpp +958 -0
  17. data/vendor/isotree/src/crit.hpp +4236 -0
  18. data/vendor/isotree/src/digamma.hpp +184 -0
  19. data/vendor/isotree/src/dist.hpp +1886 -0
  20. data/vendor/isotree/src/exp_depth_table.hpp +134 -0
  21. data/vendor/isotree/src/extended.hpp +1444 -0
  22. data/vendor/isotree/src/external_facing_generic.hpp +399 -0
  23. data/vendor/isotree/src/fit_model.hpp +2401 -0
  24. data/vendor/isotree/src/{dealloc.cpp → headers_joined.hpp} +38 -22
  25. data/vendor/isotree/src/helpers_iforest.hpp +814 -0
  26. data/vendor/isotree/src/{impute.cpp → impute.hpp} +382 -123
  27. data/vendor/isotree/src/indexer.cpp +515 -0
  28. data/vendor/isotree/src/instantiate_template_headers.cpp +118 -0
  29. data/vendor/isotree/src/instantiate_template_headers.hpp +240 -0
  30. data/vendor/isotree/src/isoforest.hpp +1659 -0
  31. data/vendor/isotree/src/isotree.hpp +1815 -394
  32. data/vendor/isotree/src/isotree_exportable.hpp +99 -0
  33. data/vendor/isotree/src/merge_models.cpp +159 -16
  34. data/vendor/isotree/src/mult.hpp +1321 -0
  35. data/vendor/isotree/src/oop_interface.cpp +844 -0
  36. data/vendor/isotree/src/oop_interface.hpp +278 -0
  37. data/vendor/isotree/src/other_helpers.hpp +219 -0
  38. data/vendor/isotree/src/predict.hpp +1932 -0
  39. data/vendor/isotree/src/python_helpers.hpp +114 -0
  40. data/vendor/isotree/src/ref_indexer.hpp +154 -0
  41. data/vendor/isotree/src/robinmap/LICENSE +21 -0
  42. data/vendor/isotree/src/robinmap/README.md +483 -0
  43. data/vendor/isotree/src/robinmap/include/tsl/robin_growth_policy.h +406 -0
  44. data/vendor/isotree/src/robinmap/include/tsl/robin_hash.h +1639 -0
  45. data/vendor/isotree/src/robinmap/include/tsl/robin_map.h +807 -0
  46. data/vendor/isotree/src/robinmap/include/tsl/robin_set.h +660 -0
  47. data/vendor/isotree/src/serialize.cpp +4316 -139
  48. data/vendor/isotree/src/sql.cpp +143 -61
  49. data/vendor/isotree/src/subset_models.cpp +174 -0
  50. data/vendor/isotree/src/utils.hpp +3786 -0
  51. data/vendor/isotree/src/xoshiro.hpp +463 -0
  52. data/vendor/isotree/src/ziggurat.hpp +405 -0
  53. metadata +40 -105
  54. data/vendor/cereal/LICENSE +0 -24
  55. data/vendor/cereal/README.md +0 -85
  56. data/vendor/cereal/include/cereal/access.hpp +0 -351
  57. data/vendor/cereal/include/cereal/archives/adapters.hpp +0 -163
  58. data/vendor/cereal/include/cereal/archives/binary.hpp +0 -169
  59. data/vendor/cereal/include/cereal/archives/json.hpp +0 -1019
  60. data/vendor/cereal/include/cereal/archives/portable_binary.hpp +0 -334
  61. data/vendor/cereal/include/cereal/archives/xml.hpp +0 -956
  62. data/vendor/cereal/include/cereal/cereal.hpp +0 -1089
  63. data/vendor/cereal/include/cereal/details/helpers.hpp +0 -422
  64. data/vendor/cereal/include/cereal/details/polymorphic_impl.hpp +0 -796
  65. data/vendor/cereal/include/cereal/details/polymorphic_impl_fwd.hpp +0 -65
  66. data/vendor/cereal/include/cereal/details/static_object.hpp +0 -127
  67. data/vendor/cereal/include/cereal/details/traits.hpp +0 -1411
  68. data/vendor/cereal/include/cereal/details/util.hpp +0 -84
  69. data/vendor/cereal/include/cereal/external/base64.hpp +0 -134
  70. data/vendor/cereal/include/cereal/external/rapidjson/allocators.h +0 -284
  71. data/vendor/cereal/include/cereal/external/rapidjson/cursorstreamwrapper.h +0 -78
  72. data/vendor/cereal/include/cereal/external/rapidjson/document.h +0 -2652
  73. data/vendor/cereal/include/cereal/external/rapidjson/encodedstream.h +0 -299
  74. data/vendor/cereal/include/cereal/external/rapidjson/encodings.h +0 -716
  75. data/vendor/cereal/include/cereal/external/rapidjson/error/en.h +0 -74
  76. data/vendor/cereal/include/cereal/external/rapidjson/error/error.h +0 -161
  77. data/vendor/cereal/include/cereal/external/rapidjson/filereadstream.h +0 -99
  78. data/vendor/cereal/include/cereal/external/rapidjson/filewritestream.h +0 -104
  79. data/vendor/cereal/include/cereal/external/rapidjson/fwd.h +0 -151
  80. data/vendor/cereal/include/cereal/external/rapidjson/internal/biginteger.h +0 -290
  81. data/vendor/cereal/include/cereal/external/rapidjson/internal/diyfp.h +0 -271
  82. data/vendor/cereal/include/cereal/external/rapidjson/internal/dtoa.h +0 -245
  83. data/vendor/cereal/include/cereal/external/rapidjson/internal/ieee754.h +0 -78
  84. data/vendor/cereal/include/cereal/external/rapidjson/internal/itoa.h +0 -308
  85. data/vendor/cereal/include/cereal/external/rapidjson/internal/meta.h +0 -186
  86. data/vendor/cereal/include/cereal/external/rapidjson/internal/pow10.h +0 -55
  87. data/vendor/cereal/include/cereal/external/rapidjson/internal/regex.h +0 -740
  88. data/vendor/cereal/include/cereal/external/rapidjson/internal/stack.h +0 -232
  89. data/vendor/cereal/include/cereal/external/rapidjson/internal/strfunc.h +0 -69
  90. data/vendor/cereal/include/cereal/external/rapidjson/internal/strtod.h +0 -290
  91. data/vendor/cereal/include/cereal/external/rapidjson/internal/swap.h +0 -46
  92. data/vendor/cereal/include/cereal/external/rapidjson/istreamwrapper.h +0 -128
  93. data/vendor/cereal/include/cereal/external/rapidjson/memorybuffer.h +0 -70
  94. data/vendor/cereal/include/cereal/external/rapidjson/memorystream.h +0 -71
  95. data/vendor/cereal/include/cereal/external/rapidjson/msinttypes/inttypes.h +0 -316
  96. data/vendor/cereal/include/cereal/external/rapidjson/msinttypes/stdint.h +0 -300
  97. data/vendor/cereal/include/cereal/external/rapidjson/ostreamwrapper.h +0 -81
  98. data/vendor/cereal/include/cereal/external/rapidjson/pointer.h +0 -1414
  99. data/vendor/cereal/include/cereal/external/rapidjson/prettywriter.h +0 -277
  100. data/vendor/cereal/include/cereal/external/rapidjson/rapidjson.h +0 -656
  101. data/vendor/cereal/include/cereal/external/rapidjson/reader.h +0 -2230
  102. data/vendor/cereal/include/cereal/external/rapidjson/schema.h +0 -2497
  103. data/vendor/cereal/include/cereal/external/rapidjson/stream.h +0 -223
  104. data/vendor/cereal/include/cereal/external/rapidjson/stringbuffer.h +0 -121
  105. data/vendor/cereal/include/cereal/external/rapidjson/writer.h +0 -709
  106. data/vendor/cereal/include/cereal/external/rapidxml/license.txt +0 -52
  107. data/vendor/cereal/include/cereal/external/rapidxml/manual.html +0 -406
  108. data/vendor/cereal/include/cereal/external/rapidxml/rapidxml.hpp +0 -2624
  109. data/vendor/cereal/include/cereal/external/rapidxml/rapidxml_iterators.hpp +0 -175
  110. data/vendor/cereal/include/cereal/external/rapidxml/rapidxml_print.hpp +0 -428
  111. data/vendor/cereal/include/cereal/external/rapidxml/rapidxml_utils.hpp +0 -123
  112. data/vendor/cereal/include/cereal/macros.hpp +0 -154
  113. data/vendor/cereal/include/cereal/specialize.hpp +0 -139
  114. data/vendor/cereal/include/cereal/types/array.hpp +0 -79
  115. data/vendor/cereal/include/cereal/types/atomic.hpp +0 -55
  116. data/vendor/cereal/include/cereal/types/base_class.hpp +0 -203
  117. data/vendor/cereal/include/cereal/types/bitset.hpp +0 -176
  118. data/vendor/cereal/include/cereal/types/boost_variant.hpp +0 -164
  119. data/vendor/cereal/include/cereal/types/chrono.hpp +0 -72
  120. data/vendor/cereal/include/cereal/types/common.hpp +0 -129
  121. data/vendor/cereal/include/cereal/types/complex.hpp +0 -56
  122. data/vendor/cereal/include/cereal/types/concepts/pair_associative_container.hpp +0 -73
  123. data/vendor/cereal/include/cereal/types/deque.hpp +0 -62
  124. data/vendor/cereal/include/cereal/types/forward_list.hpp +0 -68
  125. data/vendor/cereal/include/cereal/types/functional.hpp +0 -43
  126. data/vendor/cereal/include/cereal/types/list.hpp +0 -62
  127. data/vendor/cereal/include/cereal/types/map.hpp +0 -36
  128. data/vendor/cereal/include/cereal/types/memory.hpp +0 -425
  129. data/vendor/cereal/include/cereal/types/optional.hpp +0 -66
  130. data/vendor/cereal/include/cereal/types/polymorphic.hpp +0 -483
  131. data/vendor/cereal/include/cereal/types/queue.hpp +0 -132
  132. data/vendor/cereal/include/cereal/types/set.hpp +0 -103
  133. data/vendor/cereal/include/cereal/types/stack.hpp +0 -76
  134. data/vendor/cereal/include/cereal/types/string.hpp +0 -61
  135. data/vendor/cereal/include/cereal/types/tuple.hpp +0 -123
  136. data/vendor/cereal/include/cereal/types/unordered_map.hpp +0 -36
  137. data/vendor/cereal/include/cereal/types/unordered_set.hpp +0 -99
  138. data/vendor/cereal/include/cereal/types/utility.hpp +0 -47
  139. data/vendor/cereal/include/cereal/types/valarray.hpp +0 -89
  140. data/vendor/cereal/include/cereal/types/variant.hpp +0 -109
  141. data/vendor/cereal/include/cereal/types/vector.hpp +0 -112
  142. data/vendor/cereal/include/cereal/version.hpp +0 -52
  143. data/vendor/isotree/src/Makevars +0 -4
  144. data/vendor/isotree/src/crit.cpp +0 -912
  145. data/vendor/isotree/src/dist.cpp +0 -749
  146. data/vendor/isotree/src/extended.cpp +0 -790
  147. data/vendor/isotree/src/fit_model.cpp +0 -1090
  148. data/vendor/isotree/src/helpers_iforest.cpp +0 -324
  149. data/vendor/isotree/src/isoforest.cpp +0 -771
  150. data/vendor/isotree/src/mult.cpp +0 -607
  151. data/vendor/isotree/src/predict.cpp +0 -853
  152. data/vendor/isotree/src/utils.cpp +0 -1566
@@ -0,0 +1,184 @@
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+ /* Copyright (c) 2001-2002 Enthought, Inc. 2003-2023, SciPy Developers.
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+ All rights reserved.
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+
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+ Redistribution and use in source and binary forms, with or without
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+ modification, are permitted provided that the following conditions
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+ are met:
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+
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+ 1. Redistributions of source code must retain the above copyright
9
+ notice, this list of conditions and the following disclaimer.
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+
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+ 2. Redistributions in binary form must reproduce the above
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+ copyright notice, this list of conditions and the following
13
+ disclaimer in the documentation and/or other materials provided
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+ with the distribution.
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+
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+ 3. Neither the name of the copyright holder nor the names of its
17
+ contributors may be used to endorse or promote products derived
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+ from this software without specific prior written permission.
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+
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+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
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+ "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
22
+ LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
23
+ A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
24
+ OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
25
+ SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
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+ LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
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+ DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
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+ THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
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+ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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+ OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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+
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+ Distributed under 3-clause BSD license with permission from the author,
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+ see https://lists.debian.org/debian-legal/2004/12/msg00295.html
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+
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+ ------------------------------------------------------------------
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+
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+ Cephes Math Library Release 2.8: June, 2000
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+ Copyright 1984, 1995, 2000 by Stephen L. Moshier
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+
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+ This software is derived from the Cephes Math Library and is
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+ incorporated herein by permission of the author.
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+
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+ All rights reserved.
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+
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+ Redistribution and use in source and binary forms, with or without
46
+ modification, are permitted provided that the following conditions are met:
47
+ * Redistributions of source code must retain the above copyright
48
+ notice, this list of conditions and the following disclaimer.
49
+ * Redistributions in binary form must reproduce the above copyright
50
+ notice, this list of conditions and the following disclaimer in the
51
+ documentation and/or other materials provided with the distribution.
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+ * Neither the name of the <organization> nor the
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+ names of its contributors may be used to endorse or promote products
54
+ derived from this software without specific prior written permission.
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+
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+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
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+ ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
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+ WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
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+ DISCLAIMED. IN NO EVENT SHALL <COPYRIGHT HOLDER> BE LIABLE FOR ANY
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+ DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
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+ (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
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+ LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
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+ ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
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+ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
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+ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. */
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+
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+ static inline void poly6_twice_return_p7
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+ (
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+ const double x,
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+ const double *restrict coefs1,
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+ const double *restrict coefs2,
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+ double &restrict res1,
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+ double &restrict res2,
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+ double &restrict w7
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+ )
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+ {
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+ double w[6];
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+ w[0] = 1.;
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+ w[1] = x;
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+ w[2] = x*x;
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+ w[3] = x*w[2];
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+ w[4] = w[2]*w[2];
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+ w[5] = w[2]*w[3];
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+ w7 = w[3]*w[3];
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+ res1 = 0.;
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+ res2 = 0.;
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+ for (int ix = 0; ix < 6; ix++)
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+ {
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+ res1 = std::fma(coefs1[ix], w[ix], res1);
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+ res2 = std::fma(coefs2[ix], w[ix], res2);
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+ }
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+ }
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+
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+ static inline double poly7(const double x, const double *restrict coefs)
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+ {
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+ double w[7];
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+ w[0] = 1.;
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+ w[1] = x;
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+ w[2] = x*x;
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+ w[3] = x*w[2];
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+ w[4] = w[2]*w[2];
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+ w[5] = w[2]*w[3];
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+ w[6] = w[3]*w[3];
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+
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+ double out = 0.;
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+ for (int ix = 0; ix < 7; ix++)
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+ out = std::fma(w[ix], coefs[ix], out);
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+ return out;
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+ }
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+
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+ static const double coefs_12_m[6] = {
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+ 0.25479851061131551,
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+ -0.32555031186804491,
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+ -0.65031853770896507,
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+ -0.28919126444774784,
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+ -0.045251321448739056,
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+ -0.0020713321167745952
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+ };
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+
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+ static const double coefs_12_d[6] = {
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+ 1.0,
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+ 2.0767117023730469,
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+ 1.4606242909763515,
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+ 0.43593529692665969,
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+ 0.054151797245674225,
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+ 0.0021284987017821144
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+ };
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+
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+ static double coefs_asy[] = {
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+ 8.33333333333333333333E-2,
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+ -8.33333333333333333333E-3,
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+ 3.96825396825396825397E-3,
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+ -4.16666666666666666667E-3,
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+ 7.57575757575757575758E-3,
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+ -2.10927960927960927961E-2,
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+ 8.33333333333333333333E-2
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+ };
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+
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+ /* This is implemented only for positive non-integer inputs */
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+ double digamma(double x)
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+ {
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+ /* check for positive integer up to 64 */
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+ if (unlikely((x <= 64) && (x == std::floor(x)))) {
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+ return harmonic_recursive(1.0, (double)x) - EULERS_GAMMA;
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+ }
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+
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+ double y = 0.;
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+
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+ /* use the recurrence relation to move x into [1, 2] */
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+ if (x < 1.) {
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+ y -= 1. / x;
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+ x += 1.;
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+ }
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+ else if (x < 10.) {
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+ while (x > 2.) {
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+ x -= 1.;
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+ y += 1. / x;
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+ }
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+ }
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+
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+ if (x < 1. || x > 2.) {
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+ double z = 1. / (x*x);
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+ return y + std::log(x) - 0.5/x - z*poly7(z, coefs_asy);
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+ }
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+
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+ const double r1 = 1.46163214463740587234;
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+ const double r2 = 0.00000000033095646883;
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+ const double r3 = 0.9016312093258695918615325266959189453125e-19;
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+ const double Y = 0.99558162689208984;
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+ double m, d, p7;
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+ poly6_twice_return_p7(
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+ x - 1.,
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+ coefs_12_m,
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+ coefs_12_d,
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+ m,
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+ d,
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+ p7
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+ );
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+ double r = m / std::fma(p7, -0.55789841321675513e-6, d);
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+ double g = x - r1;
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+ g -= r2;
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+ g -= r3;
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+ return y + g*Y + g*r;
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+ }