isotree 0.2.2 → 0.3.1

data/vendor/isotree/src/RcppExports.cpp

@@ -5,12 +5,16 @@
 
 using namespace Rcpp;
 
+#ifdef RCPP_USE_GLOBAL_ROSTREAM
+Rcpp::Rostream<true>&  Rcpp::Rcout = Rcpp::Rcpp_cout_get();
+Rcpp::Rostream<false>& Rcpp::Rcerr = Rcpp::Rcpp_cerr_get();
+#endif
+
 // deserialize_IsoForest
 SEXP deserialize_IsoForest(Rcpp::RawVector src);
 RcppExport SEXP _isotree_deserialize_IsoForest(SEXP srcSEXP) {
 BEGIN_RCPP
     Rcpp::RObject rcpp_result_gen;
-    Rcpp::RNGScope rcpp_rngScope_gen;
     Rcpp::traits::input_parameter< Rcpp::RawVector >::type src(srcSEXP);
     rcpp_result_gen = Rcpp::wrap(deserialize_IsoForest(src));
     return rcpp_result_gen;
@@ -21,7 +25,6 @@ SEXP deserialize_ExtIsoForest(Rcpp::RawVector src);
 RcppExport SEXP _isotree_deserialize_ExtIsoForest(SEXP srcSEXP) {
 BEGIN_RCPP
     Rcpp::RObject rcpp_result_gen;
-    Rcpp::RNGScope rcpp_rngScope_gen;
     Rcpp::traits::input_parameter< Rcpp::RawVector >::type src(srcSEXP);
     rcpp_result_gen = Rcpp::wrap(deserialize_ExtIsoForest(src));
     return rcpp_result_gen;
@@ -32,29 +35,76 @@ SEXP deserialize_Imputer(Rcpp::RawVector src);
 RcppExport SEXP _isotree_deserialize_Imputer(SEXP srcSEXP) {
 BEGIN_RCPP
     Rcpp::RObject rcpp_result_gen;
-    Rcpp::RNGScope rcpp_rngScope_gen;
     Rcpp::traits::input_parameter< Rcpp::RawVector >::type src(srcSEXP);
     rcpp_result_gen = Rcpp::wrap(deserialize_Imputer(src));
     return rcpp_result_gen;
 END_RCPP
 }
-// check_null_ptr_model
-Rcpp::LogicalVector check_null_ptr_model(SEXP ptr_model);
-RcppExport SEXP _isotree_check_null_ptr_model(SEXP ptr_modelSEXP) {
+// deserialize_Indexer
+SEXP deserialize_Indexer(Rcpp::RawVector src);
+RcppExport SEXP _isotree_deserialize_Indexer(SEXP srcSEXP) {
+BEGIN_RCPP
+    Rcpp::RObject rcpp_result_gen;
+    Rcpp::traits::input_parameter< Rcpp::RawVector >::type src(srcSEXP);
+    rcpp_result_gen = Rcpp::wrap(deserialize_Indexer(src));
+    return rcpp_result_gen;
+END_RCPP
+}
+// serialize_IsoForest_from_ptr
+SEXP serialize_IsoForest_from_ptr(SEXP R_ptr);
+RcppExport SEXP _isotree_serialize_IsoForest_from_ptr(SEXP R_ptrSEXP) {
+BEGIN_RCPP
+    Rcpp::RObject rcpp_result_gen;
+    Rcpp::traits::input_parameter< SEXP >::type R_ptr(R_ptrSEXP);
+    rcpp_result_gen = Rcpp::wrap(serialize_IsoForest_from_ptr(R_ptr));
+    return rcpp_result_gen;
+END_RCPP
+}
+// serialize_ExtIsoForest_from_ptr
+SEXP serialize_ExtIsoForest_from_ptr(SEXP R_ptr);
+RcppExport SEXP _isotree_serialize_ExtIsoForest_from_ptr(SEXP R_ptrSEXP) {
+BEGIN_RCPP
+    Rcpp::RObject rcpp_result_gen;
+    Rcpp::traits::input_parameter< SEXP >::type R_ptr(R_ptrSEXP);
+    rcpp_result_gen = Rcpp::wrap(serialize_ExtIsoForest_from_ptr(R_ptr));
+    return rcpp_result_gen;
+END_RCPP
+}
+// serialize_Imputer_from_ptr
+SEXP serialize_Imputer_from_ptr(SEXP R_ptr);
+RcppExport SEXP _isotree_serialize_Imputer_from_ptr(SEXP R_ptrSEXP) {
+BEGIN_RCPP
+    Rcpp::RObject rcpp_result_gen;
+    Rcpp::traits::input_parameter< SEXP >::type R_ptr(R_ptrSEXP);
+    rcpp_result_gen = Rcpp::wrap(serialize_Imputer_from_ptr(R_ptr));
+    return rcpp_result_gen;
+END_RCPP
+}
+// serialize_Indexer_from_ptr
+SEXP serialize_Indexer_from_ptr(SEXP R_ptr);
+RcppExport SEXP _isotree_serialize_Indexer_from_ptr(SEXP R_ptrSEXP) {
+BEGIN_RCPP
+    Rcpp::RObject rcpp_result_gen;
+    Rcpp::traits::input_parameter< SEXP >::type R_ptr(R_ptrSEXP);
+    rcpp_result_gen = Rcpp::wrap(serialize_Indexer_from_ptr(R_ptr));
+    return rcpp_result_gen;
+END_RCPP
+}
+// check_null_ptr_model_internal
+Rcpp::LogicalVector check_null_ptr_model_internal(SEXP ptr_model);
+RcppExport SEXP _isotree_check_null_ptr_model_internal(SEXP ptr_modelSEXP) {
 BEGIN_RCPP
     Rcpp::RObject rcpp_result_gen;
-    Rcpp::RNGScope rcpp_rngScope_gen;
     Rcpp::traits::input_parameter< SEXP >::type ptr_model(ptr_modelSEXP);
-    rcpp_result_gen = Rcpp::wrap(check_null_ptr_model(ptr_model));
+    rcpp_result_gen = Rcpp::wrap(check_null_ptr_model_internal(ptr_model));
     return rcpp_result_gen;
 END_RCPP
 }
 // fit_model
-Rcpp::List fit_model(Rcpp::NumericVector X_num, Rcpp::IntegerVector X_cat, Rcpp::IntegerVector ncat, Rcpp::NumericVector Xc, Rcpp::IntegerVector Xc_ind, Rcpp::IntegerVector Xc_indptr, Rcpp::NumericVector sample_weights, Rcpp::NumericVector col_weights, size_t nrows, size_t ncols_numeric, size_t ncols_categ, size_t ndim, size_t ntry, Rcpp::CharacterVector coef_type, bool coef_by_prop, bool with_replacement, bool weight_as_sample, size_t sample_size, size_t ntrees, size_t max_depth, bool limit_depth, bool penalize_range, bool calc_dist, bool standardize_dist, bool sq_dist, bool calc_depth, bool standardize_depth, bool weigh_by_kurt, double prob_pick_by_gain_avg, double prob_split_by_gain_avg, double prob_pick_by_gain_pl, double prob_split_by_gain_pl, double min_gain, Rcpp::CharacterVector cat_split_type, Rcpp::CharacterVector new_cat_action, Rcpp::CharacterVector missing_action, bool all_perm, bool build_imputer, bool output_imputations, size_t min_imp_obs, Rcpp::CharacterVector depth_imp, Rcpp::CharacterVector weigh_imp_rows, int random_seed, bool handle_interrupt, int nthreads);
-RcppExport SEXP _isotree_fit_model(SEXP X_numSEXP, SEXP X_catSEXP, SEXP ncatSEXP, SEXP XcSEXP, SEXP Xc_indSEXP, SEXP Xc_indptrSEXP, SEXP sample_weightsSEXP, SEXP col_weightsSEXP, SEXP nrowsSEXP, SEXP ncols_numericSEXP, SEXP ncols_categSEXP, SEXP ndimSEXP, SEXP ntrySEXP, SEXP coef_typeSEXP, SEXP coef_by_propSEXP, SEXP with_replacementSEXP, SEXP weight_as_sampleSEXP, SEXP sample_sizeSEXP, SEXP ntreesSEXP, SEXP max_depthSEXP, SEXP limit_depthSEXP, SEXP penalize_rangeSEXP, SEXP calc_distSEXP, SEXP standardize_distSEXP, SEXP sq_distSEXP, SEXP calc_depthSEXP, SEXP standardize_depthSEXP, SEXP weigh_by_kurtSEXP, SEXP prob_pick_by_gain_avgSEXP, SEXP prob_split_by_gain_avgSEXP, SEXP prob_pick_by_gain_plSEXP, SEXP prob_split_by_gain_plSEXP, SEXP min_gainSEXP, SEXP cat_split_typeSEXP, SEXP new_cat_actionSEXP, SEXP missing_actionSEXP, SEXP all_permSEXP, SEXP build_imputerSEXP, SEXP output_imputationsSEXP, SEXP min_imp_obsSEXP, SEXP depth_impSEXP, SEXP weigh_imp_rowsSEXP, SEXP random_seedSEXP, SEXP handle_interruptSEXP, SEXP nthreadsSEXP) {
+Rcpp::List fit_model(Rcpp::NumericVector X_num, Rcpp::IntegerVector X_cat, Rcpp::IntegerVector ncat, Rcpp::NumericVector Xc, Rcpp::IntegerVector Xc_ind, Rcpp::IntegerVector Xc_indptr, Rcpp::NumericVector sample_weights, Rcpp::NumericVector col_weights, size_t nrows, size_t ncols_numeric, size_t ncols_categ, size_t ndim, size_t ntry, Rcpp::CharacterVector coef_type, bool coef_by_prop, bool with_replacement, bool weight_as_sample, size_t sample_size, size_t ntrees, size_t max_depth, size_t ncols_per_tree, bool limit_depth, bool penalize_range, bool standardize_data, Rcpp::CharacterVector scoring_metric, bool fast_bratio, bool calc_dist, bool standardize_dist, bool sq_dist, bool calc_depth, bool standardize_depth, bool weigh_by_kurt, double prob_pick_by_gain_pl, double prob_pick_by_gain_avg, double prob_pick_by_full_gain, double prob_pick_by_dens, double prob_pick_col_by_range, double prob_pick_col_by_var, double prob_pick_col_by_kurt, double min_gain, Rcpp::CharacterVector cat_split_type, Rcpp::CharacterVector new_cat_action, Rcpp::CharacterVector missing_action, bool all_perm, bool build_imputer, bool output_imputations, size_t min_imp_obs, Rcpp::CharacterVector depth_imp, Rcpp::CharacterVector weigh_imp_rows, int random_seed, bool use_long_double, int nthreads, bool lazy_serialization);
+RcppExport SEXP _isotree_fit_model(SEXP X_numSEXP, SEXP X_catSEXP, SEXP ncatSEXP, SEXP XcSEXP, SEXP Xc_indSEXP, SEXP Xc_indptrSEXP, SEXP sample_weightsSEXP, SEXP col_weightsSEXP, SEXP nrowsSEXP, SEXP ncols_numericSEXP, SEXP ncols_categSEXP, SEXP ndimSEXP, SEXP ntrySEXP, SEXP coef_typeSEXP, SEXP coef_by_propSEXP, SEXP with_replacementSEXP, SEXP weight_as_sampleSEXP, SEXP sample_sizeSEXP, SEXP ntreesSEXP, SEXP max_depthSEXP, SEXP ncols_per_treeSEXP, SEXP limit_depthSEXP, SEXP penalize_rangeSEXP, SEXP standardize_dataSEXP, SEXP scoring_metricSEXP, SEXP fast_bratioSEXP, SEXP calc_distSEXP, SEXP standardize_distSEXP, SEXP sq_distSEXP, SEXP calc_depthSEXP, SEXP standardize_depthSEXP, SEXP weigh_by_kurtSEXP, SEXP prob_pick_by_gain_plSEXP, SEXP prob_pick_by_gain_avgSEXP, SEXP prob_pick_by_full_gainSEXP, SEXP prob_pick_by_densSEXP, SEXP prob_pick_col_by_rangeSEXP, SEXP prob_pick_col_by_varSEXP, SEXP prob_pick_col_by_kurtSEXP, SEXP min_gainSEXP, SEXP cat_split_typeSEXP, SEXP new_cat_actionSEXP, SEXP missing_actionSEXP, SEXP all_permSEXP, SEXP build_imputerSEXP, SEXP output_imputationsSEXP, SEXP min_imp_obsSEXP, SEXP depth_impSEXP, SEXP weigh_imp_rowsSEXP, SEXP random_seedSEXP, SEXP use_long_doubleSEXP, SEXP nthreadsSEXP, SEXP lazy_serializationSEXP) {
 BEGIN_RCPP
     Rcpp::RObject rcpp_result_gen;
-    Rcpp::RNGScope rcpp_rngScope_gen;
     Rcpp::traits::input_parameter< Rcpp::NumericVector >::type X_num(X_numSEXP);
     Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type X_cat(X_catSEXP);
     Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type ncat(ncatSEXP);
@@ -75,18 +125,25 @@ BEGIN_RCPP
     Rcpp::traits::input_parameter< size_t >::type sample_size(sample_sizeSEXP);
     Rcpp::traits::input_parameter< size_t >::type ntrees(ntreesSEXP);
     Rcpp::traits::input_parameter< size_t >::type max_depth(max_depthSEXP);
+    Rcpp::traits::input_parameter< size_t >::type ncols_per_tree(ncols_per_treeSEXP);
     Rcpp::traits::input_parameter< bool >::type limit_depth(limit_depthSEXP);
     Rcpp::traits::input_parameter< bool >::type penalize_range(penalize_rangeSEXP);
+    Rcpp::traits::input_parameter< bool >::type standardize_data(standardize_dataSEXP);
+    Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type scoring_metric(scoring_metricSEXP);
+    Rcpp::traits::input_parameter< bool >::type fast_bratio(fast_bratioSEXP);
     Rcpp::traits::input_parameter< bool >::type calc_dist(calc_distSEXP);
     Rcpp::traits::input_parameter< bool >::type standardize_dist(standardize_distSEXP);
     Rcpp::traits::input_parameter< bool >::type sq_dist(sq_distSEXP);
     Rcpp::traits::input_parameter< bool >::type calc_depth(calc_depthSEXP);
     Rcpp::traits::input_parameter< bool >::type standardize_depth(standardize_depthSEXP);
     Rcpp::traits::input_parameter< bool >::type weigh_by_kurt(weigh_by_kurtSEXP);
-    Rcpp::traits::input_parameter< double >::type prob_pick_by_gain_avg(prob_pick_by_gain_avgSEXP);
-    Rcpp::traits::input_parameter< double >::type prob_split_by_gain_avg(prob_split_by_gain_avgSEXP);
     Rcpp::traits::input_parameter< double >::type prob_pick_by_gain_pl(prob_pick_by_gain_plSEXP);
-    Rcpp::traits::input_parameter< double >::type prob_split_by_gain_pl(prob_split_by_gain_plSEXP);
+    Rcpp::traits::input_parameter< double >::type prob_pick_by_gain_avg(prob_pick_by_gain_avgSEXP);
+    Rcpp::traits::input_parameter< double >::type prob_pick_by_full_gain(prob_pick_by_full_gainSEXP);
+    Rcpp::traits::input_parameter< double >::type prob_pick_by_dens(prob_pick_by_densSEXP);
+    Rcpp::traits::input_parameter< double >::type prob_pick_col_by_range(prob_pick_col_by_rangeSEXP);
+    Rcpp::traits::input_parameter< double >::type prob_pick_col_by_var(prob_pick_col_by_varSEXP);
+    Rcpp::traits::input_parameter< double >::type prob_pick_col_by_kurt(prob_pick_col_by_kurtSEXP);
     Rcpp::traits::input_parameter< double >::type min_gain(min_gainSEXP);
     Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type cat_split_type(cat_split_typeSEXP);
     Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type new_cat_action(new_cat_actionSEXP);
@@ -98,19 +155,22 @@ BEGIN_RCPP
     Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type depth_imp(depth_impSEXP);
     Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type weigh_imp_rows(weigh_imp_rowsSEXP);
     Rcpp::traits::input_parameter< int >::type random_seed(random_seedSEXP);
-    Rcpp::traits::input_parameter< bool >::type handle_interrupt(handle_interruptSEXP);
+    Rcpp::traits::input_parameter< bool >::type use_long_double(use_long_doubleSEXP);
     Rcpp::traits::input_parameter< int >::type nthreads(nthreadsSEXP);
-    rcpp_result_gen = Rcpp::wrap(fit_model(X_num, X_cat, ncat, Xc, Xc_ind, Xc_indptr, sample_weights, col_weights, nrows, ncols_numeric, ncols_categ, ndim, ntry, coef_type, coef_by_prop, with_replacement, weight_as_sample, sample_size, ntrees, max_depth, limit_depth, penalize_range, calc_dist, standardize_dist, sq_dist, calc_depth, standardize_depth, weigh_by_kurt, prob_pick_by_gain_avg, prob_split_by_gain_avg, prob_pick_by_gain_pl, prob_split_by_gain_pl, min_gain, cat_split_type, new_cat_action, missing_action, all_perm, build_imputer, output_imputations, min_imp_obs, depth_imp, weigh_imp_rows, random_seed, handle_interrupt, nthreads));
+    Rcpp::traits::input_parameter< bool >::type lazy_serialization(lazy_serializationSEXP);
+    rcpp_result_gen = Rcpp::wrap(fit_model(X_num, X_cat, ncat, Xc, Xc_ind, Xc_indptr, sample_weights, col_weights, nrows, ncols_numeric, ncols_categ, ndim, ntry, coef_type, coef_by_prop, with_replacement, weight_as_sample, sample_size, ntrees, max_depth, ncols_per_tree, limit_depth, penalize_range, standardize_data, scoring_metric, fast_bratio, calc_dist, standardize_dist, sq_dist, calc_depth, standardize_depth, weigh_by_kurt, prob_pick_by_gain_pl, prob_pick_by_gain_avg, prob_pick_by_full_gain, prob_pick_by_dens, prob_pick_col_by_range, prob_pick_col_by_var, prob_pick_col_by_kurt, min_gain, cat_split_type, new_cat_action, missing_action, all_perm, build_imputer, output_imputations, min_imp_obs, depth_imp, weigh_imp_rows, random_seed, use_long_double, nthreads, lazy_serialization));
     return rcpp_result_gen;
 END_RCPP
 }
 // fit_tree
-Rcpp::RawVector fit_tree(SEXP model_R_ptr, Rcpp::NumericVector X_num, Rcpp::IntegerVector X_cat, Rcpp::IntegerVector ncat, Rcpp::NumericVector Xc, Rcpp::IntegerVector Xc_ind, Rcpp::IntegerVector Xc_indptr, Rcpp::NumericVector sample_weights, Rcpp::NumericVector col_weights, size_t nrows, size_t ncols_numeric, size_t ncols_categ, size_t ndim, size_t ntry, Rcpp::CharacterVector coef_type, bool coef_by_prop, size_t max_depth, bool limit_depth, bool penalize_range, bool weigh_by_kurt, double prob_pick_by_gain_avg, double prob_split_by_gain_avg, double prob_pick_by_gain_pl, double prob_split_by_gain_pl, double min_gain, Rcpp::CharacterVector cat_split_type, Rcpp::CharacterVector new_cat_action, Rcpp::CharacterVector missing_action, bool build_imputer, size_t min_imp_obs, SEXP imp_R_ptr, Rcpp::CharacterVector depth_imp, Rcpp::CharacterVector weigh_imp_rows, bool all_perm, uint64_t random_seed);
-RcppExport SEXP _isotree_fit_tree(SEXP model_R_ptrSEXP, SEXP X_numSEXP, SEXP X_catSEXP, SEXP ncatSEXP, SEXP XcSEXP, SEXP Xc_indSEXP, SEXP Xc_indptrSEXP, SEXP sample_weightsSEXP, SEXP col_weightsSEXP, SEXP nrowsSEXP, SEXP ncols_numericSEXP, SEXP ncols_categSEXP, SEXP ndimSEXP, SEXP ntrySEXP, SEXP coef_typeSEXP, SEXP coef_by_propSEXP, SEXP max_depthSEXP, SEXP limit_depthSEXP, SEXP penalize_rangeSEXP, SEXP weigh_by_kurtSEXP, SEXP prob_pick_by_gain_avgSEXP, SEXP prob_split_by_gain_avgSEXP, SEXP prob_pick_by_gain_plSEXP, SEXP prob_split_by_gain_plSEXP, SEXP min_gainSEXP, SEXP cat_split_typeSEXP, SEXP new_cat_actionSEXP, SEXP missing_actionSEXP, SEXP build_imputerSEXP, SEXP min_imp_obsSEXP, SEXP imp_R_ptrSEXP, SEXP depth_impSEXP, SEXP weigh_imp_rowsSEXP, SEXP all_permSEXP, SEXP random_seedSEXP) {
+void fit_tree(SEXP model_R_ptr, Rcpp::RawVector serialized_obj, Rcpp::RawVector serialized_imputer, SEXP indexer_R_ptr, Rcpp::RawVector serialized_indexer, Rcpp::NumericVector X_num, Rcpp::IntegerVector X_cat, Rcpp::IntegerVector ncat, Rcpp::NumericVector Xc, Rcpp::IntegerVector Xc_ind, Rcpp::IntegerVector Xc_indptr, Rcpp::NumericVector sample_weights, Rcpp::NumericVector col_weights, size_t nrows, size_t ncols_numeric, size_t ncols_categ, size_t ndim, size_t ntry, Rcpp::CharacterVector coef_type, bool coef_by_prop, size_t max_depth, size_t ncols_per_tree, bool limit_depth, bool penalize_range, bool standardize_data, bool fast_bratio, bool weigh_by_kurt, double prob_pick_by_gain_pl, double prob_pick_by_gain_avg, double prob_pick_by_full_gain, double prob_pick_by_dens, double prob_pick_col_by_range, double prob_pick_col_by_var, double prob_pick_col_by_kurt, double min_gain, Rcpp::CharacterVector cat_split_type, Rcpp::CharacterVector new_cat_action, Rcpp::CharacterVector missing_action, bool build_imputer, size_t min_imp_obs, SEXP imp_R_ptr, Rcpp::CharacterVector depth_imp, Rcpp::CharacterVector weigh_imp_rows, bool all_perm, Rcpp::NumericVector ref_X_num, Rcpp::IntegerVector ref_X_cat, Rcpp::NumericVector ref_Xc, Rcpp::IntegerVector ref_Xc_ind, Rcpp::IntegerVector ref_Xc_indptr, uint64_t random_seed, bool use_long_double, Rcpp::List& model_cpp_obj_update, Rcpp::List& model_params_update, bool is_altrepped);
+RcppExport SEXP _isotree_fit_tree(SEXP model_R_ptrSEXP, SEXP serialized_objSEXP, SEXP serialized_imputerSEXP, SEXP indexer_R_ptrSEXP, SEXP serialized_indexerSEXP, SEXP X_numSEXP, SEXP X_catSEXP, SEXP ncatSEXP, SEXP XcSEXP, SEXP Xc_indSEXP, SEXP Xc_indptrSEXP, SEXP sample_weightsSEXP, SEXP col_weightsSEXP, SEXP nrowsSEXP, SEXP ncols_numericSEXP, SEXP ncols_categSEXP, SEXP ndimSEXP, SEXP ntrySEXP, SEXP coef_typeSEXP, SEXP coef_by_propSEXP, SEXP max_depthSEXP, SEXP ncols_per_treeSEXP, SEXP limit_depthSEXP, SEXP penalize_rangeSEXP, SEXP standardize_dataSEXP, SEXP fast_bratioSEXP, SEXP weigh_by_kurtSEXP, SEXP prob_pick_by_gain_plSEXP, SEXP prob_pick_by_gain_avgSEXP, SEXP prob_pick_by_full_gainSEXP, SEXP prob_pick_by_densSEXP, SEXP prob_pick_col_by_rangeSEXP, SEXP prob_pick_col_by_varSEXP, SEXP prob_pick_col_by_kurtSEXP, SEXP min_gainSEXP, SEXP cat_split_typeSEXP, SEXP new_cat_actionSEXP, SEXP missing_actionSEXP, SEXP build_imputerSEXP, SEXP min_imp_obsSEXP, SEXP imp_R_ptrSEXP, SEXP depth_impSEXP, SEXP weigh_imp_rowsSEXP, SEXP all_permSEXP, SEXP ref_X_numSEXP, SEXP ref_X_catSEXP, SEXP ref_XcSEXP, SEXP ref_Xc_indSEXP, SEXP ref_Xc_indptrSEXP, SEXP random_seedSEXP, SEXP use_long_doubleSEXP, SEXP model_cpp_obj_updateSEXP, SEXP model_params_updateSEXP, SEXP is_altreppedSEXP) {
 BEGIN_RCPP
-    Rcpp::RObject rcpp_result_gen;
-    Rcpp::RNGScope rcpp_rngScope_gen;
     Rcpp::traits::input_parameter< SEXP >::type model_R_ptr(model_R_ptrSEXP);
+    Rcpp::traits::input_parameter< Rcpp::RawVector >::type serialized_obj(serialized_objSEXP);
+    Rcpp::traits::input_parameter< Rcpp::RawVector >::type serialized_imputer(serialized_imputerSEXP);
+    Rcpp::traits::input_parameter< SEXP >::type indexer_R_ptr(indexer_R_ptrSEXP);
+    Rcpp::traits::input_parameter< Rcpp::RawVector >::type serialized_indexer(serialized_indexerSEXP);
     Rcpp::traits::input_parameter< Rcpp::NumericVector >::type X_num(X_numSEXP);
     Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type X_cat(X_catSEXP);
     Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type ncat(ncatSEXP);
@@ -127,13 +187,19 @@ BEGIN_RCPP
     Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type coef_type(coef_typeSEXP);
     Rcpp::traits::input_parameter< bool >::type coef_by_prop(coef_by_propSEXP);
     Rcpp::traits::input_parameter< size_t >::type max_depth(max_depthSEXP);
+    Rcpp::traits::input_parameter< size_t >::type ncols_per_tree(ncols_per_treeSEXP);
     Rcpp::traits::input_parameter< bool >::type limit_depth(limit_depthSEXP);
     Rcpp::traits::input_parameter< bool >::type penalize_range(penalize_rangeSEXP);
+    Rcpp::traits::input_parameter< bool >::type standardize_data(standardize_dataSEXP);
+    Rcpp::traits::input_parameter< bool >::type fast_bratio(fast_bratioSEXP);
     Rcpp::traits::input_parameter< bool >::type weigh_by_kurt(weigh_by_kurtSEXP);
-    Rcpp::traits::input_parameter< double >::type prob_pick_by_gain_avg(prob_pick_by_gain_avgSEXP);
-    Rcpp::traits::input_parameter< double >::type prob_split_by_gain_avg(prob_split_by_gain_avgSEXP);
     Rcpp::traits::input_parameter< double >::type prob_pick_by_gain_pl(prob_pick_by_gain_plSEXP);
-    Rcpp::traits::input_parameter< double >::type prob_split_by_gain_pl(prob_split_by_gain_plSEXP);
+    Rcpp::traits::input_parameter< double >::type prob_pick_by_gain_avg(prob_pick_by_gain_avgSEXP);
+    Rcpp::traits::input_parameter< double >::type prob_pick_by_full_gain(prob_pick_by_full_gainSEXP);
+    Rcpp::traits::input_parameter< double >::type prob_pick_by_dens(prob_pick_by_densSEXP);
+    Rcpp::traits::input_parameter< double >::type prob_pick_col_by_range(prob_pick_col_by_rangeSEXP);
+    Rcpp::traits::input_parameter< double >::type prob_pick_col_by_var(prob_pick_col_by_varSEXP);
+    Rcpp::traits::input_parameter< double >::type prob_pick_col_by_kurt(prob_pick_col_by_kurtSEXP);
     Rcpp::traits::input_parameter< double >::type min_gain(min_gainSEXP);
     Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type cat_split_type(cat_split_typeSEXP);
     Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type new_cat_action(new_cat_actionSEXP);
@@ -144,20 +210,30 @@ BEGIN_RCPP
     Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type depth_imp(depth_impSEXP);
     Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type weigh_imp_rows(weigh_imp_rowsSEXP);
     Rcpp::traits::input_parameter< bool >::type all_perm(all_permSEXP);
+    Rcpp::traits::input_parameter< Rcpp::NumericVector >::type ref_X_num(ref_X_numSEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type ref_X_cat(ref_X_catSEXP);
+    Rcpp::traits::input_parameter< Rcpp::NumericVector >::type ref_Xc(ref_XcSEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type ref_Xc_ind(ref_Xc_indSEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type ref_Xc_indptr(ref_Xc_indptrSEXP);
     Rcpp::traits::input_parameter< uint64_t >::type random_seed(random_seedSEXP);
-    rcpp_result_gen = Rcpp::wrap(fit_tree(model_R_ptr, X_num, X_cat, ncat, Xc, Xc_ind, Xc_indptr, sample_weights, col_weights, nrows, ncols_numeric, ncols_categ, ndim, ntry, coef_type, coef_by_prop, max_depth, limit_depth, penalize_range, weigh_by_kurt, prob_pick_by_gain_avg, prob_split_by_gain_avg, prob_pick_by_gain_pl, prob_split_by_gain_pl, min_gain, cat_split_type, new_cat_action, missing_action, build_imputer, min_imp_obs, imp_R_ptr, depth_imp, weigh_imp_rows, all_perm, random_seed));
-    return rcpp_result_gen;
+    Rcpp::traits::input_parameter< bool >::type use_long_double(use_long_doubleSEXP);
+    Rcpp::traits::input_parameter< Rcpp::List& >::type model_cpp_obj_update(model_cpp_obj_updateSEXP);
+    Rcpp::traits::input_parameter< Rcpp::List& >::type model_params_update(model_params_updateSEXP);
+    Rcpp::traits::input_parameter< bool >::type is_altrepped(is_altreppedSEXP);
+    fit_tree(model_R_ptr, serialized_obj, serialized_imputer, indexer_R_ptr, serialized_indexer, X_num, X_cat, ncat, Xc, Xc_ind, Xc_indptr, sample_weights, col_weights, nrows, ncols_numeric, ncols_categ, ndim, ntry, coef_type, coef_by_prop, max_depth, ncols_per_tree, limit_depth, penalize_range, standardize_data, fast_bratio, weigh_by_kurt, prob_pick_by_gain_pl, prob_pick_by_gain_avg, prob_pick_by_full_gain, prob_pick_by_dens, prob_pick_col_by_range, prob_pick_col_by_var, prob_pick_col_by_kurt, min_gain, cat_split_type, new_cat_action, missing_action, build_imputer, min_imp_obs, imp_R_ptr, depth_imp, weigh_imp_rows, all_perm, ref_X_num, ref_X_cat, ref_Xc, ref_Xc_ind, ref_Xc_indptr, random_seed, use_long_double, model_cpp_obj_update, model_params_update, is_altrepped);
+    return R_NilValue;
 END_RCPP
 }
 // predict_iso
-void predict_iso(SEXP model_R_ptr, Rcpp::NumericVector outp, Rcpp::IntegerVector tree_num, bool is_extended, Rcpp::NumericVector X_num, Rcpp::IntegerVector X_cat, Rcpp::NumericVector Xc, Rcpp::IntegerVector Xc_ind, Rcpp::IntegerVector Xc_indptr, Rcpp::NumericVector Xr, Rcpp::IntegerVector Xr_ind, Rcpp::IntegerVector Xr_indptr, size_t nrows, int nthreads, bool standardize);
-RcppExport SEXP _isotree_predict_iso(SEXP model_R_ptrSEXP, SEXP outpSEXP, SEXP tree_numSEXP, SEXP is_extendedSEXP, SEXP X_numSEXP, SEXP X_catSEXP, SEXP XcSEXP, SEXP Xc_indSEXP, SEXP Xc_indptrSEXP, SEXP XrSEXP, SEXP Xr_indSEXP, SEXP Xr_indptrSEXP, SEXP nrowsSEXP, SEXP nthreadsSEXP, SEXP standardizeSEXP) {
+void predict_iso(SEXP model_R_ptr, bool is_extended, SEXP indexer_R_ptr, Rcpp::NumericVector outp, Rcpp::IntegerMatrix tree_num, Rcpp::NumericMatrix tree_depths, Rcpp::NumericVector X_num, Rcpp::IntegerVector X_cat, Rcpp::NumericVector Xc, Rcpp::IntegerVector Xc_ind, Rcpp::IntegerVector Xc_indptr, Rcpp::NumericVector Xr, Rcpp::IntegerVector Xr_ind, Rcpp::IntegerVector Xr_indptr, size_t nrows, int nthreads, bool standardize);
+RcppExport SEXP _isotree_predict_iso(SEXP model_R_ptrSEXP, SEXP is_extendedSEXP, SEXP indexer_R_ptrSEXP, SEXP outpSEXP, SEXP tree_numSEXP, SEXP tree_depthsSEXP, SEXP X_numSEXP, SEXP X_catSEXP, SEXP XcSEXP, SEXP Xc_indSEXP, SEXP Xc_indptrSEXP, SEXP XrSEXP, SEXP Xr_indSEXP, SEXP Xr_indptrSEXP, SEXP nrowsSEXP, SEXP nthreadsSEXP, SEXP standardizeSEXP) {
 BEGIN_RCPP
-    Rcpp::RNGScope rcpp_rngScope_gen;
     Rcpp::traits::input_parameter< SEXP >::type model_R_ptr(model_R_ptrSEXP);
-    Rcpp::traits::input_parameter< Rcpp::NumericVector >::type outp(outpSEXP);
-    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type tree_num(tree_numSEXP);
     Rcpp::traits::input_parameter< bool >::type is_extended(is_extendedSEXP);
+    Rcpp::traits::input_parameter< SEXP >::type indexer_R_ptr(indexer_R_ptrSEXP);
+    Rcpp::traits::input_parameter< Rcpp::NumericVector >::type outp(outpSEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerMatrix >::type tree_num(tree_numSEXP);
+    Rcpp::traits::input_parameter< Rcpp::NumericMatrix >::type tree_depths(tree_depthsSEXP);
     Rcpp::traits::input_parameter< Rcpp::NumericVector >::type X_num(X_numSEXP);
     Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type X_cat(X_catSEXP);
     Rcpp::traits::input_parameter< Rcpp::NumericVector >::type Xc(XcSEXP);
@@ -169,19 +245,19 @@ BEGIN_RCPP
     Rcpp::traits::input_parameter< size_t >::type nrows(nrowsSEXP);
     Rcpp::traits::input_parameter< int >::type nthreads(nthreadsSEXP);
     Rcpp::traits::input_parameter< bool >::type standardize(standardizeSEXP);
-    predict_iso(model_R_ptr, outp, tree_num, is_extended, X_num, X_cat, Xc, Xc_ind, Xc_indptr, Xr, Xr_ind, Xr_indptr, nrows, nthreads, standardize);
+    predict_iso(model_R_ptr, is_extended, indexer_R_ptr, outp, tree_num, tree_depths, X_num, X_cat, Xc, Xc_ind, Xc_indptr, Xr, Xr_ind, Xr_indptr, nrows, nthreads, standardize);
     return R_NilValue;
 END_RCPP
 }
 // dist_iso
-void dist_iso(SEXP model_R_ptr, Rcpp::NumericVector tmat, Rcpp::NumericVector dmat, Rcpp::NumericVector rmat, bool is_extended, Rcpp::NumericVector X_num, Rcpp::IntegerVector X_cat, Rcpp::NumericVector Xc, Rcpp::IntegerVector Xc_ind, Rcpp::IntegerVector Xc_indptr, size_t nrows, int nthreads, bool assume_full_distr, bool standardize_dist, bool sq_dist, size_t n_from);
-RcppExport SEXP _isotree_dist_iso(SEXP model_R_ptrSEXP, SEXP tmatSEXP, SEXP dmatSEXP, SEXP rmatSEXP, SEXP is_extendedSEXP, SEXP X_numSEXP, SEXP X_catSEXP, SEXP XcSEXP, SEXP Xc_indSEXP, SEXP Xc_indptrSEXP, SEXP nrowsSEXP, SEXP nthreadsSEXP, SEXP assume_full_distrSEXP, SEXP standardize_distSEXP, SEXP sq_distSEXP, SEXP n_fromSEXP) {
+void dist_iso(SEXP model_R_ptr, SEXP indexer_R_ptr, Rcpp::NumericVector tmat, Rcpp::NumericMatrix dmat, Rcpp::NumericMatrix rmat, bool is_extended, Rcpp::NumericVector X_num, Rcpp::IntegerVector X_cat, Rcpp::NumericVector Xc, Rcpp::IntegerVector Xc_ind, Rcpp::IntegerVector Xc_indptr, size_t nrows, bool use_long_double, int nthreads, bool assume_full_distr, bool standardize_dist, bool sq_dist, size_t n_from, bool use_reference_points, bool as_kernel);
+RcppExport SEXP _isotree_dist_iso(SEXP model_R_ptrSEXP, SEXP indexer_R_ptrSEXP, SEXP tmatSEXP, SEXP dmatSEXP, SEXP rmatSEXP, SEXP is_extendedSEXP, SEXP X_numSEXP, SEXP X_catSEXP, SEXP XcSEXP, SEXP Xc_indSEXP, SEXP Xc_indptrSEXP, SEXP nrowsSEXP, SEXP use_long_doubleSEXP, SEXP nthreadsSEXP, SEXP assume_full_distrSEXP, SEXP standardize_distSEXP, SEXP sq_distSEXP, SEXP n_fromSEXP, SEXP use_reference_pointsSEXP, SEXP as_kernelSEXP) {
 BEGIN_RCPP
-    Rcpp::RNGScope rcpp_rngScope_gen;
     Rcpp::traits::input_parameter< SEXP >::type model_R_ptr(model_R_ptrSEXP);
+    Rcpp::traits::input_parameter< SEXP >::type indexer_R_ptr(indexer_R_ptrSEXP);
     Rcpp::traits::input_parameter< Rcpp::NumericVector >::type tmat(tmatSEXP);
-    Rcpp::traits::input_parameter< Rcpp::NumericVector >::type dmat(dmatSEXP);
-    Rcpp::traits::input_parameter< Rcpp::NumericVector >::type rmat(rmatSEXP);
+    Rcpp::traits::input_parameter< Rcpp::NumericMatrix >::type dmat(dmatSEXP);
+    Rcpp::traits::input_parameter< Rcpp::NumericMatrix >::type rmat(rmatSEXP);
     Rcpp::traits::input_parameter< bool >::type is_extended(is_extendedSEXP);
     Rcpp::traits::input_parameter< Rcpp::NumericVector >::type X_num(X_numSEXP);
     Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type X_cat(X_catSEXP);
@@ -189,21 +265,23 @@ BEGIN_RCPP
     Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xc_ind(Xc_indSEXP);
     Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xc_indptr(Xc_indptrSEXP);
     Rcpp::traits::input_parameter< size_t >::type nrows(nrowsSEXP);
+    Rcpp::traits::input_parameter< bool >::type use_long_double(use_long_doubleSEXP);
     Rcpp::traits::input_parameter< int >::type nthreads(nthreadsSEXP);
     Rcpp::traits::input_parameter< bool >::type assume_full_distr(assume_full_distrSEXP);
     Rcpp::traits::input_parameter< bool >::type standardize_dist(standardize_distSEXP);
     Rcpp::traits::input_parameter< bool >::type sq_dist(sq_distSEXP);
     Rcpp::traits::input_parameter< size_t >::type n_from(n_fromSEXP);
-    dist_iso(model_R_ptr, tmat, dmat, rmat, is_extended, X_num, X_cat, Xc, Xc_ind, Xc_indptr, nrows, nthreads, assume_full_distr, standardize_dist, sq_dist, n_from);
+    Rcpp::traits::input_parameter< bool >::type use_reference_points(use_reference_pointsSEXP);
+    Rcpp::traits::input_parameter< bool >::type as_kernel(as_kernelSEXP);
+    dist_iso(model_R_ptr, indexer_R_ptr, tmat, dmat, rmat, is_extended, X_num, X_cat, Xc, Xc_ind, Xc_indptr, nrows, use_long_double, nthreads, assume_full_distr, standardize_dist, sq_dist, n_from, use_reference_points, as_kernel);
     return R_NilValue;
 END_RCPP
 }
 // impute_iso
-Rcpp::List impute_iso(SEXP model_R_ptr, SEXP imputer_R_ptr, bool is_extended, Rcpp::NumericVector X_num, Rcpp::IntegerVector X_cat, Rcpp::NumericVector Xr, Rcpp::IntegerVector Xr_ind, Rcpp::IntegerVector Xr_indptr, size_t nrows, int nthreads);
-RcppExport SEXP _isotree_impute_iso(SEXP model_R_ptrSEXP, SEXP imputer_R_ptrSEXP, SEXP is_extendedSEXP, SEXP X_numSEXP, SEXP X_catSEXP, SEXP XrSEXP, SEXP Xr_indSEXP, SEXP Xr_indptrSEXP, SEXP nrowsSEXP, SEXP nthreadsSEXP) {
+Rcpp::List impute_iso(SEXP model_R_ptr, SEXP imputer_R_ptr, bool is_extended, Rcpp::NumericVector X_num, Rcpp::IntegerVector X_cat, Rcpp::NumericVector Xr, Rcpp::IntegerVector Xr_ind, Rcpp::IntegerVector Xr_indptr, size_t nrows, bool use_long_double, int nthreads);
+RcppExport SEXP _isotree_impute_iso(SEXP model_R_ptrSEXP, SEXP imputer_R_ptrSEXP, SEXP is_extendedSEXP, SEXP X_numSEXP, SEXP X_catSEXP, SEXP XrSEXP, SEXP Xr_indSEXP, SEXP Xr_indptrSEXP, SEXP nrowsSEXP, SEXP use_long_doubleSEXP, SEXP nthreadsSEXP) {
 BEGIN_RCPP
     Rcpp::RObject rcpp_result_gen;
-    Rcpp::RNGScope rcpp_rngScope_gen;
     Rcpp::traits::input_parameter< SEXP >::type model_R_ptr(model_R_ptrSEXP);
     Rcpp::traits::input_parameter< SEXP >::type imputer_R_ptr(imputer_R_ptrSEXP);
     Rcpp::traits::input_parameter< bool >::type is_extended(is_extendedSEXP);
@@ -213,17 +291,79 @@ BEGIN_RCPP
     Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xr_ind(Xr_indSEXP);
     Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xr_indptr(Xr_indptrSEXP);
     Rcpp::traits::input_parameter< size_t >::type nrows(nrowsSEXP);
+    Rcpp::traits::input_parameter< bool >::type use_long_double(use_long_doubleSEXP);
     Rcpp::traits::input_parameter< int >::type nthreads(nthreadsSEXP);
-    rcpp_result_gen = Rcpp::wrap(impute_iso(model_R_ptr, imputer_R_ptr, is_extended, X_num, X_cat, Xr, Xr_ind, Xr_indptr, nrows, nthreads));
+    rcpp_result_gen = Rcpp::wrap(impute_iso(model_R_ptr, imputer_R_ptr, is_extended, X_num, X_cat, Xr, Xr_ind, Xr_indptr, nrows, use_long_double, nthreads));
+    return rcpp_result_gen;
+END_RCPP
+}
+// drop_imputer
+void drop_imputer(bool is_altrepped, bool free_cpp, SEXP lst_imputer, Rcpp::List lst_cpp_objects, Rcpp::List lst_params);
+RcppExport SEXP _isotree_drop_imputer(SEXP is_altreppedSEXP, SEXP free_cppSEXP, SEXP lst_imputerSEXP, SEXP lst_cpp_objectsSEXP, SEXP lst_paramsSEXP) {
+BEGIN_RCPP
+    Rcpp::traits::input_parameter< bool >::type is_altrepped(is_altreppedSEXP);
+    Rcpp::traits::input_parameter< bool >::type free_cpp(free_cppSEXP);
+    Rcpp::traits::input_parameter< SEXP >::type lst_imputer(lst_imputerSEXP);
+    Rcpp::traits::input_parameter< Rcpp::List >::type lst_cpp_objects(lst_cpp_objectsSEXP);
+    Rcpp::traits::input_parameter< Rcpp::List >::type lst_params(lst_paramsSEXP);
+    drop_imputer(is_altrepped, free_cpp, lst_imputer, lst_cpp_objects, lst_params);
+    return R_NilValue;
+END_RCPP
+}
+// drop_indexer
+void drop_indexer(bool is_altrepped, bool free_cpp, SEXP lst_indexer, Rcpp::List lst_cpp_objects, Rcpp::List lst_metadata);
+RcppExport SEXP _isotree_drop_indexer(SEXP is_altreppedSEXP, SEXP free_cppSEXP, SEXP lst_indexerSEXP, SEXP lst_cpp_objectsSEXP, SEXP lst_metadataSEXP) {
+BEGIN_RCPP
+    Rcpp::traits::input_parameter< bool >::type is_altrepped(is_altreppedSEXP);
+    Rcpp::traits::input_parameter< bool >::type free_cpp(free_cppSEXP);
+    Rcpp::traits::input_parameter< SEXP >::type lst_indexer(lst_indexerSEXP);
+    Rcpp::traits::input_parameter< Rcpp::List >::type lst_cpp_objects(lst_cpp_objectsSEXP);
+    Rcpp::traits::input_parameter< Rcpp::List >::type lst_metadata(lst_metadataSEXP);
+    drop_indexer(is_altrepped, free_cpp, lst_indexer, lst_cpp_objects, lst_metadata);
+    return R_NilValue;
+END_RCPP
+}
+// drop_reference_points
+void drop_reference_points(bool is_altrepped, SEXP lst_indexer, Rcpp::List lst_cpp_objects, Rcpp::List lst_metadata);
+RcppExport SEXP _isotree_drop_reference_points(SEXP is_altreppedSEXP, SEXP lst_indexerSEXP, SEXP lst_cpp_objectsSEXP, SEXP lst_metadataSEXP) {
+BEGIN_RCPP
+    Rcpp::traits::input_parameter< bool >::type is_altrepped(is_altreppedSEXP);
+    Rcpp::traits::input_parameter< SEXP >::type lst_indexer(lst_indexerSEXP);
+    Rcpp::traits::input_parameter< Rcpp::List >::type lst_cpp_objects(lst_cpp_objectsSEXP);
+    Rcpp::traits::input_parameter< Rcpp::List >::type lst_metadata(lst_metadataSEXP);
+    drop_reference_points(is_altrepped, lst_indexer, lst_cpp_objects, lst_metadata);
+    return R_NilValue;
+END_RCPP
+}
+// subset_trees
+Rcpp::List subset_trees(SEXP model_R_ptr, SEXP imputer_R_ptr, SEXP indexer_R_ptr, bool is_extended, bool is_altrepped, Rcpp::IntegerVector trees_take);
+RcppExport SEXP _isotree_subset_trees(SEXP model_R_ptrSEXP, SEXP imputer_R_ptrSEXP, SEXP indexer_R_ptrSEXP, SEXP is_extendedSEXP, SEXP is_altreppedSEXP, SEXP trees_takeSEXP) {
+BEGIN_RCPP
+    Rcpp::RObject rcpp_result_gen;
+    Rcpp::traits::input_parameter< SEXP >::type model_R_ptr(model_R_ptrSEXP);
+    Rcpp::traits::input_parameter< SEXP >::type imputer_R_ptr(imputer_R_ptrSEXP);
+    Rcpp::traits::input_parameter< SEXP >::type indexer_R_ptr(indexer_R_ptrSEXP);
+    Rcpp::traits::input_parameter< bool >::type is_extended(is_extendedSEXP);
+    Rcpp::traits::input_parameter< bool >::type is_altrepped(is_altreppedSEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type trees_take(trees_takeSEXP);
+    rcpp_result_gen = Rcpp::wrap(subset_trees(model_R_ptr, imputer_R_ptr, indexer_R_ptr, is_extended, is_altrepped, trees_take));
     return rcpp_result_gen;
 END_RCPP
 }
+// inplace_set_to_zero
+void inplace_set_to_zero(SEXP obj);
+RcppExport SEXP _isotree_inplace_set_to_zero(SEXP objSEXP) {
+BEGIN_RCPP
+    Rcpp::traits::input_parameter< SEXP >::type obj(objSEXP);
+    inplace_set_to_zero(obj);
+    return R_NilValue;
+END_RCPP
+}
 // get_n_nodes
 Rcpp::List get_n_nodes(SEXP model_R_ptr, bool is_extended, int nthreads);
 RcppExport SEXP _isotree_get_n_nodes(SEXP model_R_ptrSEXP, SEXP is_extendedSEXP, SEXP nthreadsSEXP) {
 BEGIN_RCPP
     Rcpp::RObject rcpp_result_gen;
-    Rcpp::RNGScope rcpp_rngScope_gen;
     Rcpp::traits::input_parameter< SEXP >::type model_R_ptr(model_R_ptrSEXP);
     Rcpp::traits::input_parameter< bool >::type is_extended(is_extendedSEXP);
     Rcpp::traits::input_parameter< int >::type nthreads(nthreadsSEXP);
@@ -232,18 +372,24 @@ BEGIN_RCPP
 END_RCPP
 }
 // append_trees_from_other
-Rcpp::List append_trees_from_other(SEXP model_R_ptr, SEXP other_R_ptr, SEXP imp_R_ptr, SEXP oimp_R_ptr, bool is_extended);
-RcppExport SEXP _isotree_append_trees_from_other(SEXP model_R_ptrSEXP, SEXP other_R_ptrSEXP, SEXP imp_R_ptrSEXP, SEXP oimp_R_ptrSEXP, SEXP is_extendedSEXP) {
+void append_trees_from_other(SEXP model_R_ptr, SEXP other_R_ptr, SEXP imp_R_ptr, SEXP oimp_R_ptr, SEXP ind_R_ptr, SEXP oind_R_ptr, bool is_extended, Rcpp::RawVector serialized_obj, Rcpp::RawVector serialized_imputer, Rcpp::RawVector serialized_indexer, Rcpp::List& model_cpp_obj_update, Rcpp::List& model_params_update, bool is_altrepped);
+RcppExport SEXP _isotree_append_trees_from_other(SEXP model_R_ptrSEXP, SEXP other_R_ptrSEXP, SEXP imp_R_ptrSEXP, SEXP oimp_R_ptrSEXP, SEXP ind_R_ptrSEXP, SEXP oind_R_ptrSEXP, SEXP is_extendedSEXP, SEXP serialized_objSEXP, SEXP serialized_imputerSEXP, SEXP serialized_indexerSEXP, SEXP model_cpp_obj_updateSEXP, SEXP model_params_updateSEXP, SEXP is_altreppedSEXP) {
 BEGIN_RCPP
-    Rcpp::RObject rcpp_result_gen;
-    Rcpp::RNGScope rcpp_rngScope_gen;
     Rcpp::traits::input_parameter< SEXP >::type model_R_ptr(model_R_ptrSEXP);
     Rcpp::traits::input_parameter< SEXP >::type other_R_ptr(other_R_ptrSEXP);
     Rcpp::traits::input_parameter< SEXP >::type imp_R_ptr(imp_R_ptrSEXP);
     Rcpp::traits::input_parameter< SEXP >::type oimp_R_ptr(oimp_R_ptrSEXP);
+    Rcpp::traits::input_parameter< SEXP >::type ind_R_ptr(ind_R_ptrSEXP);
+    Rcpp::traits::input_parameter< SEXP >::type oind_R_ptr(oind_R_ptrSEXP);
     Rcpp::traits::input_parameter< bool >::type is_extended(is_extendedSEXP);
-    rcpp_result_gen = Rcpp::wrap(append_trees_from_other(model_R_ptr, other_R_ptr, imp_R_ptr, oimp_R_ptr, is_extended));
-    return rcpp_result_gen;
+    Rcpp::traits::input_parameter< Rcpp::RawVector >::type serialized_obj(serialized_objSEXP);
+    Rcpp::traits::input_parameter< Rcpp::RawVector >::type serialized_imputer(serialized_imputerSEXP);
+    Rcpp::traits::input_parameter< Rcpp::RawVector >::type serialized_indexer(serialized_indexerSEXP);
+    Rcpp::traits::input_parameter< Rcpp::List& >::type model_cpp_obj_update(model_cpp_obj_updateSEXP);
+    Rcpp::traits::input_parameter< Rcpp::List& >::type model_params_update(model_params_updateSEXP);
+    Rcpp::traits::input_parameter< bool >::type is_altrepped(is_altreppedSEXP);
+    append_trees_from_other(model_R_ptr, other_R_ptr, imp_R_ptr, oimp_R_ptr, ind_R_ptr, oind_R_ptr, is_extended, serialized_obj, serialized_imputer, serialized_indexer, model_cpp_obj_update, model_params_update, is_altrepped);
+    return R_NilValue;
 END_RCPP
 }
 // model_to_sql
@@ -251,7 +397,6 @@ Rcpp::ListOf<Rcpp::CharacterVector> model_to_sql(SEXP model_R_ptr, bool is_exten
 RcppExport SEXP _isotree_model_to_sql(SEXP model_R_ptrSEXP, SEXP is_extendedSEXP, SEXP numeric_colanmesSEXP, SEXP categ_colnamesSEXP, SEXP categ_levelsSEXP, SEXP output_tree_numSEXP, SEXP single_treeSEXP, SEXP tree_numSEXP, SEXP nthreadsSEXP) {
 BEGIN_RCPP
     Rcpp::RObject rcpp_result_gen;
-    Rcpp::RNGScope rcpp_rngScope_gen;
     Rcpp::traits::input_parameter< SEXP >::type model_R_ptr(model_R_ptrSEXP);
     Rcpp::traits::input_parameter< bool >::type is_extended(is_extendedSEXP);
     Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type numeric_colanmes(numeric_colanmesSEXP);
@@ -270,7 +415,6 @@ Rcpp::CharacterVector model_to_sql_with_select_from(SEXP model_R_ptr, bool is_ex
 RcppExport SEXP _isotree_model_to_sql_with_select_from(SEXP model_R_ptrSEXP, SEXP is_extendedSEXP, SEXP numeric_colanmesSEXP, SEXP categ_colnamesSEXP, SEXP categ_levelsSEXP, SEXP table_fromSEXP, SEXP select_asSEXP, SEXP nthreadsSEXP) {
 BEGIN_RCPP
     Rcpp::RObject rcpp_result_gen;
-    Rcpp::RNGScope rcpp_rngScope_gen;
     Rcpp::traits::input_parameter< SEXP >::type model_R_ptr(model_R_ptrSEXP);
     Rcpp::traits::input_parameter< bool >::type is_extended(is_extendedSEXP);
     Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type numeric_colanmes(numeric_colanmesSEXP);
@@ -283,25 +427,418 @@ BEGIN_RCPP
     return rcpp_result_gen;
 END_RCPP
 }
+// copy_cpp_objects
+Rcpp::List copy_cpp_objects(SEXP model_R_ptr, bool is_extended, SEXP imp_R_ptr, SEXP ind_R_ptr, bool lazy_serialization);
+RcppExport SEXP _isotree_copy_cpp_objects(SEXP model_R_ptrSEXP, SEXP is_extendedSEXP, SEXP imp_R_ptrSEXP, SEXP ind_R_ptrSEXP, SEXP lazy_serializationSEXP) {
+BEGIN_RCPP
+    Rcpp::RObject rcpp_result_gen;
+    Rcpp::traits::input_parameter< SEXP >::type model_R_ptr(model_R_ptrSEXP);
+    Rcpp::traits::input_parameter< bool >::type is_extended(is_extendedSEXP);
+    Rcpp::traits::input_parameter< SEXP >::type imp_R_ptr(imp_R_ptrSEXP);
+    Rcpp::traits::input_parameter< SEXP >::type ind_R_ptr(ind_R_ptrSEXP);
+    Rcpp::traits::input_parameter< bool >::type lazy_serialization(lazy_serializationSEXP);
+    rcpp_result_gen = Rcpp::wrap(copy_cpp_objects(model_R_ptr, is_extended, imp_R_ptr, ind_R_ptr, lazy_serialization));
+    return rcpp_result_gen;
+END_RCPP
+}
+// build_tree_indices
+void build_tree_indices(Rcpp::List lst_cpp_objects, SEXP ptr_model, bool is_altrepped, bool is_extended, bool with_distances, int nthreads);
+RcppExport SEXP _isotree_build_tree_indices(SEXP lst_cpp_objectsSEXP, SEXP ptr_modelSEXP, SEXP is_altreppedSEXP, SEXP is_extendedSEXP, SEXP with_distancesSEXP, SEXP nthreadsSEXP) {
+BEGIN_RCPP
+    Rcpp::traits::input_parameter< Rcpp::List >::type lst_cpp_objects(lst_cpp_objectsSEXP);
+    Rcpp::traits::input_parameter< SEXP >::type ptr_model(ptr_modelSEXP);
+    Rcpp::traits::input_parameter< bool >::type is_altrepped(is_altreppedSEXP);
+    Rcpp::traits::input_parameter< bool >::type is_extended(is_extendedSEXP);
+    Rcpp::traits::input_parameter< bool >::type with_distances(with_distancesSEXP);
+    Rcpp::traits::input_parameter< int >::type nthreads(nthreadsSEXP);
+    build_tree_indices(lst_cpp_objects, ptr_model, is_altrepped, is_extended, with_distances, nthreads);
+    return R_NilValue;
+END_RCPP
+}
+// check_node_indexer_has_distances
+bool check_node_indexer_has_distances(SEXP indexer_R_ptr);
+RcppExport SEXP _isotree_check_node_indexer_has_distances(SEXP indexer_R_ptrSEXP) {
+BEGIN_RCPP
+    Rcpp::RObject rcpp_result_gen;
+    Rcpp::traits::input_parameter< SEXP >::type indexer_R_ptr(indexer_R_ptrSEXP);
+    rcpp_result_gen = Rcpp::wrap(check_node_indexer_has_distances(indexer_R_ptr));
+    return rcpp_result_gen;
+END_RCPP
+}
+// set_reference_points
+void set_reference_points(Rcpp::List lst_cpp_objects, SEXP ptr_model, SEXP ind_R_ptr, bool is_altrepped, Rcpp::List lst_metadata, SEXP rnames, bool is_extended, Rcpp::NumericVector X_num, Rcpp::IntegerVector X_cat, Rcpp::NumericVector Xc, Rcpp::IntegerVector Xc_ind, Rcpp::IntegerVector Xc_indptr, size_t nrows, int nthreads, bool with_distances);
+RcppExport SEXP _isotree_set_reference_points(SEXP lst_cpp_objectsSEXP, SEXP ptr_modelSEXP, SEXP ind_R_ptrSEXP, SEXP is_altreppedSEXP, SEXP lst_metadataSEXP, SEXP rnamesSEXP, SEXP is_extendedSEXP, SEXP X_numSEXP, SEXP X_catSEXP, SEXP XcSEXP, SEXP Xc_indSEXP, SEXP Xc_indptrSEXP, SEXP nrowsSEXP, SEXP nthreadsSEXP, SEXP with_distancesSEXP) {
+BEGIN_RCPP
+    Rcpp::traits::input_parameter< Rcpp::List >::type lst_cpp_objects(lst_cpp_objectsSEXP);
+    Rcpp::traits::input_parameter< SEXP >::type ptr_model(ptr_modelSEXP);
+    Rcpp::traits::input_parameter< SEXP >::type ind_R_ptr(ind_R_ptrSEXP);
+    Rcpp::traits::input_parameter< bool >::type is_altrepped(is_altreppedSEXP);
+    Rcpp::traits::input_parameter< Rcpp::List >::type lst_metadata(lst_metadataSEXP);
+    Rcpp::traits::input_parameter< SEXP >::type rnames(rnamesSEXP);
+    Rcpp::traits::input_parameter< bool >::type is_extended(is_extendedSEXP);
+    Rcpp::traits::input_parameter< Rcpp::NumericVector >::type X_num(X_numSEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type X_cat(X_catSEXP);
+    Rcpp::traits::input_parameter< Rcpp::NumericVector >::type Xc(XcSEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xc_ind(Xc_indSEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xc_indptr(Xc_indptrSEXP);
+    Rcpp::traits::input_parameter< size_t >::type nrows(nrowsSEXP);
+    Rcpp::traits::input_parameter< int >::type nthreads(nthreadsSEXP);
+    Rcpp::traits::input_parameter< bool >::type with_distances(with_distancesSEXP);
+    set_reference_points(lst_cpp_objects, ptr_model, ind_R_ptr, is_altrepped, lst_metadata, rnames, is_extended, X_num, X_cat, Xc, Xc_ind, Xc_indptr, nrows, nthreads, with_distances);
+    return R_NilValue;
+END_RCPP
+}
+// check_node_indexer_has_references
+bool check_node_indexer_has_references(SEXP indexer_R_ptr);
+RcppExport SEXP _isotree_check_node_indexer_has_references(SEXP indexer_R_ptrSEXP) {
+BEGIN_RCPP
+    Rcpp::RObject rcpp_result_gen;
+    Rcpp::traits::input_parameter< SEXP >::type indexer_R_ptr(indexer_R_ptrSEXP);
+    rcpp_result_gen = Rcpp::wrap(check_node_indexer_has_references(indexer_R_ptr));
+    return rcpp_result_gen;
+END_RCPP
+}
+// get_num_references
+int get_num_references(SEXP indexer_R_ptr);
+RcppExport SEXP _isotree_get_num_references(SEXP indexer_R_ptrSEXP) {
+BEGIN_RCPP
+    Rcpp::RObject rcpp_result_gen;
+    Rcpp::traits::input_parameter< SEXP >::type indexer_R_ptr(indexer_R_ptrSEXP);
+    rcpp_result_gen = Rcpp::wrap(get_num_references(indexer_R_ptr));
+    return rcpp_result_gen;
+END_RCPP
+}
+// get_null_R_pointer_internal
+SEXP get_null_R_pointer_internal(bool altrepped);
+RcppExport SEXP _isotree_get_null_R_pointer_internal(SEXP altreppedSEXP) {
+BEGIN_RCPP
+    Rcpp::RObject rcpp_result_gen;
+    Rcpp::traits::input_parameter< bool >::type altrepped(altreppedSEXP);
+    rcpp_result_gen = Rcpp::wrap(get_null_R_pointer_internal(altrepped));
+    return rcpp_result_gen;
+END_RCPP
+}
+// serialize_to_file
+void serialize_to_file(Rcpp::RawVector serialized_obj, Rcpp::RawVector serialized_imputer, Rcpp::RawVector serialized_indexer, bool is_extended, Rcpp::RawVector metadata, Rcpp::CharacterVector fname);
+RcppExport SEXP _isotree_serialize_to_file(SEXP serialized_objSEXP, SEXP serialized_imputerSEXP, SEXP serialized_indexerSEXP, SEXP is_extendedSEXP, SEXP metadataSEXP, SEXP fnameSEXP) {
+BEGIN_RCPP
+    Rcpp::RNGScope rcpp_rngScope_gen;
+    Rcpp::traits::input_parameter< Rcpp::RawVector >::type serialized_obj(serialized_objSEXP);
+    Rcpp::traits::input_parameter< Rcpp::RawVector >::type serialized_imputer(serialized_imputerSEXP);
+    Rcpp::traits::input_parameter< Rcpp::RawVector >::type serialized_indexer(serialized_indexerSEXP);
+    Rcpp::traits::input_parameter< bool >::type is_extended(is_extendedSEXP);
+    Rcpp::traits::input_parameter< Rcpp::RawVector >::type metadata(metadataSEXP);
+    Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type fname(fnameSEXP);
+    serialize_to_file(serialized_obj, serialized_imputer, serialized_indexer, is_extended, metadata, fname);
+    return R_NilValue;
+END_RCPP
+}
+// deserialize_from_file
+Rcpp::List deserialize_from_file(Rcpp::CharacterVector fname, bool lazy_serialization);
+RcppExport SEXP _isotree_deserialize_from_file(SEXP fnameSEXP, SEXP lazy_serializationSEXP) {
+BEGIN_RCPP
+    Rcpp::RObject rcpp_result_gen;
+    Rcpp::RNGScope rcpp_rngScope_gen;
+    Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type fname(fnameSEXP);
+    Rcpp::traits::input_parameter< bool >::type lazy_serialization(lazy_serializationSEXP);
+    rcpp_result_gen = Rcpp::wrap(deserialize_from_file(fname, lazy_serialization));
+    return rcpp_result_gen;
+END_RCPP
+}
+// call_sort_csc_indices
+void call_sort_csc_indices(Rcpp::NumericVector Xc, Rcpp::IntegerVector Xc_ind, Rcpp::IntegerVector Xc_indptr);
+RcppExport SEXP _isotree_call_sort_csc_indices(SEXP XcSEXP, SEXP Xc_indSEXP, SEXP Xc_indptrSEXP) {
+BEGIN_RCPP
+    Rcpp::traits::input_parameter< Rcpp::NumericVector >::type Xc(XcSEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xc_ind(Xc_indSEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xc_indptr(Xc_indptrSEXP);
+    call_sort_csc_indices(Xc, Xc_ind, Xc_indptr);
+    return R_NilValue;
+END_RCPP
+}
+// call_reconstruct_csr_sliced
+void call_reconstruct_csr_sliced(Rcpp::NumericVector orig_Xr, Rcpp::IntegerVector orig_Xr_indptr, Rcpp::NumericVector rec_Xr, Rcpp::IntegerVector rec_Xr_indptr, size_t nrows);
+RcppExport SEXP _isotree_call_reconstruct_csr_sliced(SEXP orig_XrSEXP, SEXP orig_Xr_indptrSEXP, SEXP rec_XrSEXP, SEXP rec_Xr_indptrSEXP, SEXP nrowsSEXP) {
+BEGIN_RCPP
+    Rcpp::traits::input_parameter< Rcpp::NumericVector >::type orig_Xr(orig_XrSEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type orig_Xr_indptr(orig_Xr_indptrSEXP);
+    Rcpp::traits::input_parameter< Rcpp::NumericVector >::type rec_Xr(rec_XrSEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type rec_Xr_indptr(rec_Xr_indptrSEXP);
+    Rcpp::traits::input_parameter< size_t >::type nrows(nrowsSEXP);
+    call_reconstruct_csr_sliced(orig_Xr, orig_Xr_indptr, rec_Xr, rec_Xr_indptr, nrows);
+    return R_NilValue;
+END_RCPP
+}
+// call_reconstruct_csr_with_categ
+void call_reconstruct_csr_with_categ(Rcpp::NumericVector orig_Xr, Rcpp::IntegerVector orig_Xr_ind, Rcpp::IntegerVector orig_Xr_indptr, Rcpp::NumericVector rec_Xr, Rcpp::IntegerVector rec_Xr_ind, Rcpp::IntegerVector rec_Xr_indptr, Rcpp::IntegerVector rec_X_cat, Rcpp::IntegerVector cols_numeric, Rcpp::IntegerVector cols_categ, size_t nrows, size_t ncols);
+RcppExport SEXP _isotree_call_reconstruct_csr_with_categ(SEXP orig_XrSEXP, SEXP orig_Xr_indSEXP, SEXP orig_Xr_indptrSEXP, SEXP rec_XrSEXP, SEXP rec_Xr_indSEXP, SEXP rec_Xr_indptrSEXP, SEXP rec_X_catSEXP, SEXP cols_numericSEXP, SEXP cols_categSEXP, SEXP nrowsSEXP, SEXP ncolsSEXP) {
+BEGIN_RCPP
+    Rcpp::traits::input_parameter< Rcpp::NumericVector >::type orig_Xr(orig_XrSEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type orig_Xr_ind(orig_Xr_indSEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type orig_Xr_indptr(orig_Xr_indptrSEXP);
+    Rcpp::traits::input_parameter< Rcpp::NumericVector >::type rec_Xr(rec_XrSEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type rec_Xr_ind(rec_Xr_indSEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type rec_Xr_indptr(rec_Xr_indptrSEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type rec_X_cat(rec_X_catSEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type cols_numeric(cols_numericSEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type cols_categ(cols_categSEXP);
+    Rcpp::traits::input_parameter< size_t >::type nrows(nrowsSEXP);
+    Rcpp::traits::input_parameter< size_t >::type ncols(ncolsSEXP);
+    call_reconstruct_csr_with_categ(orig_Xr, orig_Xr_ind, orig_Xr_indptr, rec_Xr, rec_Xr_ind, rec_Xr_indptr, rec_X_cat, cols_numeric, cols_categ, nrows, ncols);
+    return R_NilValue;
+END_RCPP
+}
+// deepcopy_vector
+Rcpp::NumericVector deepcopy_vector(Rcpp::NumericVector inp);
+RcppExport SEXP _isotree_deepcopy_vector(SEXP inpSEXP) {
+BEGIN_RCPP
+    Rcpp::RObject rcpp_result_gen;
+    Rcpp::traits::input_parameter< Rcpp::NumericVector >::type inp(inpSEXP);
+    rcpp_result_gen = Rcpp::wrap(deepcopy_vector(inp));
+    return rcpp_result_gen;
+END_RCPP
+}
+// call_take_cols_by_slice_csr
+Rcpp::List call_take_cols_by_slice_csr(Rcpp::NumericVector Xr_, Rcpp::IntegerVector Xr_ind_, Rcpp::IntegerVector Xr_indptr, int ncols_take, bool as_dense);
+RcppExport SEXP _isotree_call_take_cols_by_slice_csr(SEXP Xr_SEXP, SEXP Xr_ind_SEXP, SEXP Xr_indptrSEXP, SEXP ncols_takeSEXP, SEXP as_denseSEXP) {
+BEGIN_RCPP
+    Rcpp::RObject rcpp_result_gen;
+    Rcpp::traits::input_parameter< Rcpp::NumericVector >::type Xr_(Xr_SEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xr_ind_(Xr_ind_SEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xr_indptr(Xr_indptrSEXP);
+    Rcpp::traits::input_parameter< int >::type ncols_take(ncols_takeSEXP);
+    Rcpp::traits::input_parameter< bool >::type as_dense(as_denseSEXP);
+    rcpp_result_gen = Rcpp::wrap(call_take_cols_by_slice_csr(Xr_, Xr_ind_, Xr_indptr, ncols_take, as_dense));
+    return rcpp_result_gen;
+END_RCPP
+}
+// call_take_cols_by_index_csr
+Rcpp::List call_take_cols_by_index_csr(Rcpp::NumericVector Xr, Rcpp::IntegerVector Xr_ind, Rcpp::IntegerVector Xr_indptr, Rcpp::IntegerVector cols_take, bool as_dense);
+RcppExport SEXP _isotree_call_take_cols_by_index_csr(SEXP XrSEXP, SEXP Xr_indSEXP, SEXP Xr_indptrSEXP, SEXP cols_takeSEXP, SEXP as_denseSEXP) {
+BEGIN_RCPP
+    Rcpp::RObject rcpp_result_gen;
+    Rcpp::traits::input_parameter< Rcpp::NumericVector >::type Xr(XrSEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xr_ind(Xr_indSEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xr_indptr(Xr_indptrSEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type cols_take(cols_takeSEXP);
+    Rcpp::traits::input_parameter< bool >::type as_dense(as_denseSEXP);
+    rcpp_result_gen = Rcpp::wrap(call_take_cols_by_index_csr(Xr, Xr_ind, Xr_indptr, cols_take, as_dense));
+    return rcpp_result_gen;
+END_RCPP
+}
+// call_take_cols_by_slice_csc
+Rcpp::List call_take_cols_by_slice_csc(Rcpp::NumericVector Xc, Rcpp::IntegerVector Xc_ind, Rcpp::IntegerVector Xc_indptr, size_t ncols_take, bool as_dense, size_t nrows);
+RcppExport SEXP _isotree_call_take_cols_by_slice_csc(SEXP XcSEXP, SEXP Xc_indSEXP, SEXP Xc_indptrSEXP, SEXP ncols_takeSEXP, SEXP as_denseSEXP, SEXP nrowsSEXP) {
+BEGIN_RCPP
+    Rcpp::RObject rcpp_result_gen;
+    Rcpp::traits::input_parameter< Rcpp::NumericVector >::type Xc(XcSEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xc_ind(Xc_indSEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xc_indptr(Xc_indptrSEXP);
+    Rcpp::traits::input_parameter< size_t >::type ncols_take(ncols_takeSEXP);
+    Rcpp::traits::input_parameter< bool >::type as_dense(as_denseSEXP);
+    Rcpp::traits::input_parameter< size_t >::type nrows(nrowsSEXP);
+    rcpp_result_gen = Rcpp::wrap(call_take_cols_by_slice_csc(Xc, Xc_ind, Xc_indptr, ncols_take, as_dense, nrows));
+    return rcpp_result_gen;
+END_RCPP
+}
+// call_take_cols_by_index_csc
+Rcpp::List call_take_cols_by_index_csc(Rcpp::NumericVector Xc_, Rcpp::IntegerVector Xc_ind_, Rcpp::IntegerVector Xc_indptr, Rcpp::IntegerVector cols_take, bool as_dense, size_t nrows);
+RcppExport SEXP _isotree_call_take_cols_by_index_csc(SEXP Xc_SEXP, SEXP Xc_ind_SEXP, SEXP Xc_indptrSEXP, SEXP cols_takeSEXP, SEXP as_denseSEXP, SEXP nrowsSEXP) {
+BEGIN_RCPP
+    Rcpp::RObject rcpp_result_gen;
+    Rcpp::traits::input_parameter< Rcpp::NumericVector >::type Xc_(Xc_SEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xc_ind_(Xc_ind_SEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xc_indptr(Xc_indptrSEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type cols_take(cols_takeSEXP);
+    Rcpp::traits::input_parameter< bool >::type as_dense(as_denseSEXP);
+    Rcpp::traits::input_parameter< size_t >::type nrows(nrowsSEXP);
+    rcpp_result_gen = Rcpp::wrap(call_take_cols_by_index_csc(Xc_, Xc_ind_, Xc_indptr, cols_take, as_dense, nrows));
+    return rcpp_result_gen;
+END_RCPP
+}
+// copy_csc_cols_by_slice
+void copy_csc_cols_by_slice(Rcpp::NumericVector out_Xc_, Rcpp::IntegerVector out_Xc_indptr, Rcpp::NumericVector from_Xc_, Rcpp::IntegerVector from_Xc_indptr, size_t n_copy);
+RcppExport SEXP _isotree_copy_csc_cols_by_slice(SEXP out_Xc_SEXP, SEXP out_Xc_indptrSEXP, SEXP from_Xc_SEXP, SEXP from_Xc_indptrSEXP, SEXP n_copySEXP) {
+BEGIN_RCPP
+    Rcpp::traits::input_parameter< Rcpp::NumericVector >::type out_Xc_(out_Xc_SEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type out_Xc_indptr(out_Xc_indptrSEXP);
+    Rcpp::traits::input_parameter< Rcpp::NumericVector >::type from_Xc_(from_Xc_SEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type from_Xc_indptr(from_Xc_indptrSEXP);
+    Rcpp::traits::input_parameter< size_t >::type n_copy(n_copySEXP);
+    copy_csc_cols_by_slice(out_Xc_, out_Xc_indptr, from_Xc_, from_Xc_indptr, n_copy);
+    return R_NilValue;
+END_RCPP
+}
+// copy_csc_cols_by_index
+void copy_csc_cols_by_index(Rcpp::NumericVector out_Xc_, Rcpp::IntegerVector out_Xc_indptr, Rcpp::NumericVector from_Xc_, Rcpp::IntegerVector from_Xc_indptr, Rcpp::IntegerVector cols_copy);
+RcppExport SEXP _isotree_copy_csc_cols_by_index(SEXP out_Xc_SEXP, SEXP out_Xc_indptrSEXP, SEXP from_Xc_SEXP, SEXP from_Xc_indptrSEXP, SEXP cols_copySEXP) {
+BEGIN_RCPP
+    Rcpp::traits::input_parameter< Rcpp::NumericVector >::type out_Xc_(out_Xc_SEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type out_Xc_indptr(out_Xc_indptrSEXP);
+    Rcpp::traits::input_parameter< Rcpp::NumericVector >::type from_Xc_(from_Xc_SEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type from_Xc_indptr(from_Xc_indptrSEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type cols_copy(cols_copySEXP);
+    copy_csc_cols_by_index(out_Xc_, out_Xc_indptr, from_Xc_, from_Xc_indptr, cols_copy);
+    return R_NilValue;
+END_RCPP
+}
+// assign_csc_cols
+Rcpp::List assign_csc_cols(Rcpp::NumericVector Xc_, Rcpp::IntegerVector Xc_ind_, Rcpp::IntegerVector Xc_indptr, Rcpp::IntegerVector X_cat_, Rcpp::IntegerVector cols_categ, Rcpp::IntegerVector cols_numeric, size_t nrows);
+RcppExport SEXP _isotree_assign_csc_cols(SEXP Xc_SEXP, SEXP Xc_ind_SEXP, SEXP Xc_indptrSEXP, SEXP X_cat_SEXP, SEXP cols_categSEXP, SEXP cols_numericSEXP, SEXP nrowsSEXP) {
+BEGIN_RCPP
+    Rcpp::RObject rcpp_result_gen;
+    Rcpp::traits::input_parameter< Rcpp::NumericVector >::type Xc_(Xc_SEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xc_ind_(Xc_ind_SEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xc_indptr(Xc_indptrSEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type X_cat_(X_cat_SEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type cols_categ(cols_categSEXP);
+    Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type cols_numeric(cols_numericSEXP);
+    Rcpp::traits::input_parameter< size_t >::type nrows(nrowsSEXP);
+    rcpp_result_gen = Rcpp::wrap(assign_csc_cols(Xc_, Xc_ind_, Xc_indptr, X_cat_, cols_categ, cols_numeric, nrows));
+    return rcpp_result_gen;
+END_RCPP
+}
+// get_empty_tmat
+Rcpp::NumericVector get_empty_tmat(int nrows_);
+RcppExport SEXP _isotree_get_empty_tmat(SEXP nrows_SEXP) {
+BEGIN_RCPP
+    Rcpp::RObject rcpp_result_gen;
+    Rcpp::traits::input_parameter< int >::type nrows_(nrows_SEXP);
+    rcpp_result_gen = Rcpp::wrap(get_empty_tmat(nrows_));
+    return rcpp_result_gen;
+END_RCPP
+}
+// get_empty_int_mat
+Rcpp::IntegerMatrix get_empty_int_mat(int nrows, int ncols);
+RcppExport SEXP _isotree_get_empty_int_mat(SEXP nrowsSEXP, SEXP ncolsSEXP) {
+BEGIN_RCPP
+    Rcpp::RObject rcpp_result_gen;
+    Rcpp::traits::input_parameter< int >::type nrows(nrowsSEXP);
+    Rcpp::traits::input_parameter< int >::type ncols(ncolsSEXP);
+    rcpp_result_gen = Rcpp::wrap(get_empty_int_mat(nrows, ncols));
+    return rcpp_result_gen;
+END_RCPP
+}
+// get_null_int_mat
+Rcpp::IntegerMatrix get_null_int_mat();
+RcppExport SEXP _isotree_get_null_int_mat() {
+BEGIN_RCPP
+    Rcpp::RObject rcpp_result_gen;
+    rcpp_result_gen = Rcpp::wrap(get_null_int_mat());
+    return rcpp_result_gen;
+END_RCPP
+}
+// get_ntrees
+int get_ntrees(SEXP model_R_ptr, bool is_extended);
+RcppExport SEXP _isotree_get_ntrees(SEXP model_R_ptrSEXP, SEXP is_extendedSEXP) {
+BEGIN_RCPP
+    Rcpp::RObject rcpp_result_gen;
+    Rcpp::traits::input_parameter< SEXP >::type model_R_ptr(model_R_ptrSEXP);
+    Rcpp::traits::input_parameter< bool >::type is_extended(is_extendedSEXP);
+    rcpp_result_gen = Rcpp::wrap(get_ntrees(model_R_ptr, is_extended));
+    return rcpp_result_gen;
+END_RCPP
+}
+// deepcopy_int
+SEXP deepcopy_int(SEXP x);
+RcppExport SEXP _isotree_deepcopy_int(SEXP xSEXP) {
+BEGIN_RCPP
+    Rcpp::RObject rcpp_result_gen;
+    Rcpp::traits::input_parameter< SEXP >::type x(xSEXP);
+    rcpp_result_gen = Rcpp::wrap(deepcopy_int(x));
+    return rcpp_result_gen;
+END_RCPP
+}
+// modify_R_list_inplace
+void modify_R_list_inplace(SEXP lst, int ix, SEXP el);
+RcppExport SEXP _isotree_modify_R_list_inplace(SEXP lstSEXP, SEXP ixSEXP, SEXP elSEXP) {
+BEGIN_RCPP
+    Rcpp::traits::input_parameter< SEXP >::type lst(lstSEXP);
+    Rcpp::traits::input_parameter< int >::type ix(ixSEXP);
+    Rcpp::traits::input_parameter< SEXP >::type el(elSEXP);
+    modify_R_list_inplace(lst, ix, el);
+    return R_NilValue;
+END_RCPP
+}
+// addto_R_list_inplace
+void addto_R_list_inplace(Rcpp::List& lst, Rcpp::String nm, SEXP el);
+RcppExport SEXP _isotree_addto_R_list_inplace(SEXP lstSEXP, SEXP nmSEXP, SEXP elSEXP) {
+BEGIN_RCPP
+    Rcpp::traits::input_parameter< Rcpp::List& >::type lst(lstSEXP);
+    Rcpp::traits::input_parameter< Rcpp::String >::type nm(nmSEXP);
+    Rcpp::traits::input_parameter< SEXP >::type el(elSEXP);
+    addto_R_list_inplace(lst, nm, el);
+    return R_NilValue;
+END_RCPP
+}
+// R_has_openmp
+bool R_has_openmp();
+RcppExport SEXP _isotree_R_has_openmp() {
+BEGIN_RCPP
+    Rcpp::RObject rcpp_result_gen;
+    rcpp_result_gen = Rcpp::wrap(R_has_openmp());
+    return rcpp_result_gen;
+END_RCPP
+}
 
 static const R_CallMethodDef CallEntries[] = {
     {"_isotree_deserialize_IsoForest", (DL_FUNC) &_isotree_deserialize_IsoForest, 1},
     {"_isotree_deserialize_ExtIsoForest", (DL_FUNC) &_isotree_deserialize_ExtIsoForest, 1},
     {"_isotree_deserialize_Imputer", (DL_FUNC) &_isotree_deserialize_Imputer, 1},
-    {"_isotree_check_null_ptr_model", (DL_FUNC) &_isotree_check_null_ptr_model, 1},
-    {"_isotree_fit_model", (DL_FUNC) &_isotree_fit_model, 45},
-    {"_isotree_fit_tree", (DL_FUNC) &_isotree_fit_tree, 35},
-    {"_isotree_predict_iso", (DL_FUNC) &_isotree_predict_iso, 15},
-    {"_isotree_dist_iso", (DL_FUNC) &_isotree_dist_iso, 16},
-    {"_isotree_impute_iso", (DL_FUNC) &_isotree_impute_iso, 10},
+    {"_isotree_deserialize_Indexer", (DL_FUNC) &_isotree_deserialize_Indexer, 1},
+    {"_isotree_serialize_IsoForest_from_ptr", (DL_FUNC) &_isotree_serialize_IsoForest_from_ptr, 1},
+    {"_isotree_serialize_ExtIsoForest_from_ptr", (DL_FUNC) &_isotree_serialize_ExtIsoForest_from_ptr, 1},
+    {"_isotree_serialize_Imputer_from_ptr", (DL_FUNC) &_isotree_serialize_Imputer_from_ptr, 1},
+    {"_isotree_serialize_Indexer_from_ptr", (DL_FUNC) &_isotree_serialize_Indexer_from_ptr, 1},
+    {"_isotree_check_null_ptr_model_internal", (DL_FUNC) &_isotree_check_null_ptr_model_internal, 1},
+    {"_isotree_fit_model", (DL_FUNC) &_isotree_fit_model, 53},
+    {"_isotree_fit_tree", (DL_FUNC) &_isotree_fit_tree, 54},
+    {"_isotree_predict_iso", (DL_FUNC) &_isotree_predict_iso, 17},
+    {"_isotree_dist_iso", (DL_FUNC) &_isotree_dist_iso, 20},
+    {"_isotree_impute_iso", (DL_FUNC) &_isotree_impute_iso, 11},
+    {"_isotree_drop_imputer", (DL_FUNC) &_isotree_drop_imputer, 5},
+    {"_isotree_drop_indexer", (DL_FUNC) &_isotree_drop_indexer, 5},
+    {"_isotree_drop_reference_points", (DL_FUNC) &_isotree_drop_reference_points, 4},
+    {"_isotree_subset_trees", (DL_FUNC) &_isotree_subset_trees, 6},
+    {"_isotree_inplace_set_to_zero", (DL_FUNC) &_isotree_inplace_set_to_zero, 1},
     {"_isotree_get_n_nodes", (DL_FUNC) &_isotree_get_n_nodes, 3},
-    {"_isotree_append_trees_from_other", (DL_FUNC) &_isotree_append_trees_from_other, 5},
+    {"_isotree_append_trees_from_other", (DL_FUNC) &_isotree_append_trees_from_other, 13},
     {"_isotree_model_to_sql", (DL_FUNC) &_isotree_model_to_sql, 9},
     {"_isotree_model_to_sql_with_select_from", (DL_FUNC) &_isotree_model_to_sql_with_select_from, 8},
+    {"_isotree_copy_cpp_objects", (DL_FUNC) &_isotree_copy_cpp_objects, 5},
+    {"_isotree_build_tree_indices", (DL_FUNC) &_isotree_build_tree_indices, 6},
+    {"_isotree_check_node_indexer_has_distances", (DL_FUNC) &_isotree_check_node_indexer_has_distances, 1},
+    {"_isotree_set_reference_points", (DL_FUNC) &_isotree_set_reference_points, 15},
+    {"_isotree_check_node_indexer_has_references", (DL_FUNC) &_isotree_check_node_indexer_has_references, 1},
+    {"_isotree_get_num_references", (DL_FUNC) &_isotree_get_num_references, 1},
+    {"_isotree_get_null_R_pointer_internal", (DL_FUNC) &_isotree_get_null_R_pointer_internal, 1},
+    {"_isotree_serialize_to_file", (DL_FUNC) &_isotree_serialize_to_file, 6},
+    {"_isotree_deserialize_from_file", (DL_FUNC) &_isotree_deserialize_from_file, 2},
+    {"_isotree_call_sort_csc_indices", (DL_FUNC) &_isotree_call_sort_csc_indices, 3},
+    {"_isotree_call_reconstruct_csr_sliced", (DL_FUNC) &_isotree_call_reconstruct_csr_sliced, 5},
+    {"_isotree_call_reconstruct_csr_with_categ", (DL_FUNC) &_isotree_call_reconstruct_csr_with_categ, 11},
+    {"_isotree_deepcopy_vector", (DL_FUNC) &_isotree_deepcopy_vector, 1},
+    {"_isotree_call_take_cols_by_slice_csr", (DL_FUNC) &_isotree_call_take_cols_by_slice_csr, 5},
+    {"_isotree_call_take_cols_by_index_csr", (DL_FUNC) &_isotree_call_take_cols_by_index_csr, 5},
+    {"_isotree_call_take_cols_by_slice_csc", (DL_FUNC) &_isotree_call_take_cols_by_slice_csc, 6},
+    {"_isotree_call_take_cols_by_index_csc", (DL_FUNC) &_isotree_call_take_cols_by_index_csc, 6},
+    {"_isotree_copy_csc_cols_by_slice", (DL_FUNC) &_isotree_copy_csc_cols_by_slice, 5},
+    {"_isotree_copy_csc_cols_by_index", (DL_FUNC) &_isotree_copy_csc_cols_by_index, 5},
+    {"_isotree_assign_csc_cols", (DL_FUNC) &_isotree_assign_csc_cols, 7},
+    {"_isotree_get_empty_tmat", (DL_FUNC) &_isotree_get_empty_tmat, 1},
+    {"_isotree_get_empty_int_mat", (DL_FUNC) &_isotree_get_empty_int_mat, 2},
+    {"_isotree_get_null_int_mat", (DL_FUNC) &_isotree_get_null_int_mat, 0},
+    {"_isotree_get_ntrees", (DL_FUNC) &_isotree_get_ntrees, 2},
+    {"_isotree_deepcopy_int", (DL_FUNC) &_isotree_deepcopy_int, 1},
+    {"_isotree_modify_R_list_inplace", (DL_FUNC) &_isotree_modify_R_list_inplace, 3},
+    {"_isotree_addto_R_list_inplace", (DL_FUNC) &_isotree_addto_R_list_inplace, 3},
+    {"_isotree_R_has_openmp", (DL_FUNC) &_isotree_R_has_openmp, 0},
     {NULL, NULL, 0}
 };
 
+void init_altrepped_vectors(DllInfo* dll);
 RcppExport void R_init_isotree(DllInfo *dll) {
     R_registerRoutines(dll, NULL, CallEntries, NULL, NULL);
     R_useDynamicSymbols(dll, FALSE);
+    init_altrepped_vectors(dll);
 }