iroki 0.0.25 → 0.0.26
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/.gitignore +3 -1
- data/README.md +4 -0
- data/lib/iroki/core_ext/file/file.rb +12 -0
- data/lib/iroki/main/main.rb +3 -0
- data/lib/iroki/version.rb +1 -1
- metadata +2 -2
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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---
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SHA1:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 9cf667ad18dfe8bbbbe321c56bcda4c7cb308fd9
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data.tar.gz: 637d39d6337b01a3e91bb194fdd6ead4ec4293c4
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 91d870557644bf808a515af2c31d930a2e707dcfeff79f97ca377b0641725727bb7942fa6d9b9258afa5a77d187fbbeee90785b4e8814fb8ccb32b3311a71fd1
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data.tar.gz: 27f6130d57b4d6222f4f5d0f3b3a797f963775796ab2d253c9c3bad72b54577e42604c41f236f1fb3f77746cf4b7ecb4874efbae2004fd8c9f22e6440b168290
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data/.gitignore
CHANGED
data/README.md
CHANGED
@@ -37,6 +37,18 @@ end
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module Iroki
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module CoreExt
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module File
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# @note Only checks that first and last chars off the file
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# (minus trailing newlines) are correct. I.e., first char is
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# '(' and last char is ';'
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def valid_newick? fname
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str = Object::File.read(fname).chomp
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first_char = str[0]
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last_char = str[-1]
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p [:ryan, first_char, last_char]
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first_char == "(" && last_char == ";"
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end
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def check_file arg, which
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help = " Try iroki --help for help."
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data/lib/iroki/main/main.rb
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@@ -214,6 +214,9 @@ module Iroki
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newick = check_file newick_f, :newick
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abort_unless valid_newick?(newick_f),
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"The Newick file doesn't look like a real Newick file"
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abort_if out_f.nil?,
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"--outfile is a required arg. Try iroki --help for help."
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data/lib/iroki/version.rb
CHANGED
metadata
CHANGED
@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: iroki
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version: !ruby/object:Gem::Version
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version: 0.0.
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version: 0.0.26
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platform: ruby
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authors:
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- Ryan Moore
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autorequire:
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bindir: exe
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cert_chain: []
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-
date: 2016-09-
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date: 2016-09-23 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: bundler
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