hqmf2js 1.3.0 → 1.4.0

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Files changed (40) hide show
  1. checksums.yaml +5 -13
  2. data/.travis.yml +1 -1
  3. data/Gemfile +1 -25
  4. data/Gemfile.lock +170 -146
  5. data/app/assets/javascripts/crosswalk.js.coffee +17 -19
  6. data/app/assets/javascripts/custom_calculations.js.coffee +44 -17
  7. data/app/assets/javascripts/hqmf_util.js.coffee +559 -161
  8. data/app/assets/javascripts/logging_utils.js.coffee +6 -4
  9. data/app/assets/javascripts/patient_api_extension.js.coffee +41 -9
  10. data/app/assets/javascripts/specifics.js.coffee +163 -69
  11. data/hqmf2js.gemspec +7 -12
  12. data/lib/assets/javascripts/libraries/map_reduce_utils.js +151 -64
  13. data/lib/generator/characteristic.js.erb +23 -12
  14. data/lib/generator/codes_to_json.rb +1 -1
  15. data/lib/generator/data_criteria.js.erb +15 -3
  16. data/lib/generator/derived_data.js.erb +5 -0
  17. data/lib/generator/execution.rb +41 -11
  18. data/lib/generator/js.rb +74 -41
  19. data/lib/generator/patient_data.js.erb +1 -1
  20. data/lib/hqmf2js.rb +0 -1
  21. data/lib/hquery/engine.rb +3 -1
  22. data/lib/tasks/convert.rake +20 -12
  23. data/test/fixtures/NQF59New.json +1423 -0
  24. data/test/fixtures/fulfills.xml +917 -0
  25. data/test/fixtures/patients/larry_vanderman.json +573 -654
  26. data/test/{simplecov.rb → simplecov_init.rb} +0 -0
  27. data/test/test_helper.rb +2 -3
  28. data/test/unit/cmd_test.rb +145 -19
  29. data/test/unit/codes_to_json_test.rb +12 -12
  30. data/test/unit/custom_calculations_test.rb +2 -6
  31. data/test/unit/effective_date_test.rb +3 -4
  32. data/test/unit/erb_context_test.rb +12 -12
  33. data/test/unit/filter_by_reference_test.rb +39 -0
  34. data/test/unit/hqmf_from_json_javascript_test.rb +2 -1
  35. data/test/unit/hqmf_javascript_test.rb +12 -13
  36. data/test/unit/js_object_test.rb +2 -2
  37. data/test/unit/library_function_test.rb +210 -42
  38. data/test/unit/specifics_test.rb +402 -321
  39. metadata +57 -15
  40. data/config/warble.rb +0 -144
data/test/fixtures/patients/larry_vanderman.json CHANGED
@@ -1,655 +1,574 @@
1
1
  {
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- "addresses": null,
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- "allergies": [],
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- "birthdate": 160117200,
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- "care_goals": [
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- {
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- "codes": {
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- "CPT": [
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- "97804"
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- ],
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- "HCPCS": [
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- "S9470"
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- ],
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- "ICD-9-CM": [
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- "V65.3"
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- ],
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- "SNOMED-CT": [
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- "305849009"
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- ]
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- },
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- "description": "follow-up plan_BMI management",
22
- "time": 1283313600
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- }
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- ],
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- "conditions": [
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- {
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- "codes": {
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- "ICD-10-CM": [
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- "E11.9"
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- ],
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- "ICD-9-CM": [
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- "250"
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- ],
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- "SNOMED-CT": [
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- "73211009"
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- ]
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- },
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- "description": "diabetes",
39
- "status": "active",
40
- "time": 1270094400
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- },
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- {
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- "codes": {
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- "ICD-10-CM": [
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- "J45"
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- ],
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- "ICD-9-CM": [
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- "493.92"
49
- ],
50
- "SNOMED-CT": [
51
- "195979001"
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- ]
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- },
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- "description": "Asthma",
55
- "status": "active",
56
- "time": 1270094400
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- },
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- {
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- "codes": {
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- "ICD-10-CM": [
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- "I10"
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- ],
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- "ICD-9-CM": [
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- "401.9"
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- ],
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- "SNOMED-CT": [
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- "59621000"
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- ]
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- },
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- "description": "Hypertension",
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- "status": "active",
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- "time": 1270094400
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- },
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- {
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- "codes": {
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- "SNOMED-CT": [
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- "370202007"
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- ]
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- },
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- "description": "Asthma Daytime Symptoms Quantified",
81
- "time": 1270094400
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- },
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- {
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- "codes": {
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- "SNOMED-CT": [
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- "370205009"
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- ]
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- },
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- "description": "Asthma Nighttime Symptoms Quantified",
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- "time": 1270094400
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- }
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- ],
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- "encounters": [
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- {
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- "codes": {
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- "CPT": [
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- "99213"
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- ],
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- "ICD-9-CM": [
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- "V70.0"
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- ]
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- },
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- "description": "Encounter Outpatient",
104
- "facility": {
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- "name": "Outpatient Clinic",
106
- "start_time": 1290166000,
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- "end_time": 1291166000,
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- "code": {
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- "code": "bar",
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- "code_system": "SNOMED-CT"
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- }
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- },
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- "end_time": 1291266000
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- },
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- {
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- "codes": {
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- "CPT": [
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- "99241"
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- ]
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- },
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- "description": "Encounter Office & Outpatient Consult",
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- "time": 1283313600
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- },
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- {
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- "codes": {
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- "CPT": [
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- "99213"
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- ],
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- "ICD-9-CM": [
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- "V70.0"
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- ]
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- },
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- "description": "Encounter Outpatient",
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- "time": 1277265600
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- },
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- {
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- "codes": {
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- "CPT": [
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- "99241"
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- ]
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- },
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- "description": "Encounter Office & Outpatient Consult",
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- "time": 1270094400
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- }
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- ],
146
- "ethnicity": "Not Hispanic or Latino",
147
- "first": "Larry",
148
- "gender": "M",
149
- "immunizations": [],
150
- "languages": null,
151
- "last": "Vanderman",
152
- "medical_equipment": [],
153
- "medications": [
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- {
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- "codes": {
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- "RxNorm": [
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- "847207"
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- ]
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- },
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- "description": "Insulin",
161
- "time": 1278475200,
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- "administrationTiming" : {"period": {"unit": "h", "value": 8 }},
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- "fulfillmentHistory": [
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- {"dispenseDate": 1278475200, "quantityDispensed" : {"value" :"15"}}
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- ]
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- },
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- {
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- "codes": {
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- "RxNorm": [
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- "617314"
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- ]
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- },
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- "description": "Lipid Lowering Therapy",
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- "time": 1277265600
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- },
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- {
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- "codes": {
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- "RxNorm": [
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- "858828"
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- ]
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- },
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- "description": "Antihypertensive combinations",
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- "time": 1277265600
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- },
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- {
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- "codes": {
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- "RxNorm": [
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- "318142"
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- ]
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- },
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- "description": "Long acting inhaled beta 2 agonist",
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- "time": 1277265600
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- },
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- {
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- "codes": {
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- "RxNorm": [
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- "630208"
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- ]
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- },
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- "description": "Short acting beta 2 agonist",
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- "time": 1277265600
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- }
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- ],
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- "procedures": [
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- {
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- "codes": {
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- "SNOMED-CT": [
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- "401191002"
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- ]
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- },
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- "description": "Foot Exam",
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- "time": 1291266000,
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- "incisionTime": 1112587200,
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- "values": [
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- {
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- "scalar": "Normal",
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- "units": null
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- }
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- ]
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- },
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- {
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- "codes": {
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- "SNOMED-CT": [
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- "401191002"
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- ]
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- },
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- "description": "Foot Exam",
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- "time": 1283313600,
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- "values": [
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- {
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- "scalar": "Normal",
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- "units": null
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- }
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- ]
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- },
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- {
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- "codes": {
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- "SNOMED-CT": [
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- "401191002"
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- ]
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- },
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- "description": "Foot Exam",
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- "time": 1277265600,
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- "values": [
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- {
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- "scalar": "Normal",
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- "units": null
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- }
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- ]
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- },
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- {
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- "codes": {
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- "SNOMED-CT": [
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- "401191002"
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- ]
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- },
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- "description": "Foot Exam",
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- "time": 1270094400,
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- "values": [
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- {
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- "scalar": "Normal",
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- "units": null
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- }
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- ]
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- },
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- {
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- "codes": {
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- "CPT": [
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- "97802"
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- ],
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- "HCPCS": [
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- "S9470"
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- ],
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- "ICD-10-CM": [
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- "Z00.8"
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- ],
277
- "ICD-9-CM": [
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- "V65.3"
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- ]
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- },
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- "description": "counseling for nutrition",
282
- "time": 1277265600
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- },
284
- {
285
- "codes": {
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- "HCPCS": [
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- "S9451"
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- ],
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- "ICD-10-CM": [
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- "Z71.3"
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- ],
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- "ICD-9-CM": [
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- "V65.41"
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- ]
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- },
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- "description": "counseling for physical activity",
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- "time": 1277265600
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- },
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- {
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- "codes": {
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- "CPT": [
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- "92012"
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- ],
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- "HCPCS": [
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- "S0621"
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- ],
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- "ICD-9-CM": [
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- "95.03"
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- ],
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- "SNOMED-CT": [
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- "390735007"
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- ]
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- },
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- "description": "eye exam",
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- "time": 1278388800
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- }
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- ],
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- "race": "Black or African American",
319
- "results": [
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- {
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- "codes": {
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- "CPT": [
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- "83036"
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- ],
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- "LOINC": [
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- "4548-4"
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- ],
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- "SNOMED-CT": [
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- "43396009"
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- ]
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- },
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- "description": "HbA1c test",
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- "time": 1285992000,
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- "values": [
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- {
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- "scalar": 9.5,
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- "units": null
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- }
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- ]
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- },
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- {
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- "codes": {
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- "CPT": [
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- "83036"
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- ],
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- "LOINC": [
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- "4548-4"
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- ],
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- "SNOMED-CT": [
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- "43396009"
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- },
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- "description": "HbA1c test",
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- "time": 1283313600,
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- "values": [
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- "scalar": 9.2,
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- },
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- {
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- "codes": {
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- ],
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- "LOINC": [
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- "SNOMED-CT": [
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- },
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- "description": "HbA1c test",
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- "time": 1277265600,
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- "values": [
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- {
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- "scalar": 8.9,
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- "units": null
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- }
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- ]
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- },
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- {
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- "codes": {
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- "CPT": [
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- "83721"
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- ],
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- "LOINC": [
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- "2089-1"
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- ],
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- "SNOMED-CT": [
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- "113079009"
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- ]
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- },
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- "description": "LDL",
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- "time": 1277265600,
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- "values": [
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- {
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- "scalar": 115,
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- "units": null
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- }
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- },
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- {
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- "codes": {
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- "83701"
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- ],
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- "LOINC": [
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- "14646-4"
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- ],
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- "SNOMED-CT": [
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- "28036006"
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- ]
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- },
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- "description": "High Density Lipoprotein (HDL)",
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- "time": 1277265600,
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- "values": [
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- {
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- "scalar": 51,
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- "units": null
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- }
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- ]
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- },
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- {
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- "codes": {
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- "CPT": [
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- "82465"
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- ],
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- "LOINC": [
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- "2093-3"
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- ],
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- "SNOMED-CT": [
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- "121868005"
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- ]
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- },
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- "description": "Total Cholesterol",
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- "time": 1277265600,
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- "values": [
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- {
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- "scalar": 186,
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- "units": null
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- }
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- ]
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- },
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- {
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- "codes": {
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- "84478"
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- ],
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- "LOINC": [
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- "12951-0"
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- ],
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- "SNOMED-CT": [
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- "14740000"
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- ]
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- },
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- "description": "Triglycerides",
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- "time": 1277265600,
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- "values": [
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- {
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- "units": null
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- }
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- "social_history": [
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- {
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- "codes": {
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- "SNOMED-CT": [
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- "160618006"
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- ]
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- },
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- "description": "Tobacco Non-User",
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- "time": 1270094400
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- ],
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- "vital_signs": [
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- {
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- "codes": {
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- "SNOMED-CT": [
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- "271649006"
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- },
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- "description": "Systolic Blood Pressure",
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- "time": 1291266000,
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- "values": [
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- {
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- "scalar": 142,
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- "units": "mm[Hg]"
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- }
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- },
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- {
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- "codes": {
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- "SNOMED-CT": [
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- "271650006"
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- "description": "Diastolic Blood Pressure",
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- "time": 1291266000,
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- "values": [
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- {
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- "scalar": 92,
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- "codes": {
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- "description": "Systolic Blood Pressure",
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- "time": 1283313600,
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- "description": "Diastolic Blood Pressure",
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- "time": 1283313600,
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- "codes": {
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- "description": "Systolic Blood Pressure",
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- "time": 1277265600,
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- "codes": {
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- "description": "Diastolic Blood Pressure",
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- "time": 1270094400,
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- "values": [
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- {
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- "scalar": 84,
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- "units": "mm[Hg]"
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- }
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- ]
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- },
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- {
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- "codes": {
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- "39156-5"
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- ],
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- "SNOMED-CT": [
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- "60621009"
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- },
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- "description": "BMI",
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- "time": 1285992000,
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- {
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- "units": null
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- "description": "BMI",
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- "time": 1283313600,
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- "39156-5"
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- "SNOMED-CT": [
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- "60621009"
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- },
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- "description": "BMI",
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- "time": 1277265600,
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- "values": [
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- {
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- "scalar": 31.56326530612245,
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- "units": null
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- }
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- ]
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- }
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- ]
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- }
2
+ "addresses": null,
3
+ "allergies": [],
4
+ "birthdate": 160117200,
5
+ "care_goals": [{
6
+ "codes": {
7
+ "CPT": [
8
+ "97804"
9
+ ],
10
+ "HCPCS": [
11
+ "S9470"
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+ ],
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+ "ICD-9-CM": [
14
+ "V65.3"
15
+ ],
16
+ "SNOMED-CT": [
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+ "305849009"
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+ ]
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+ },
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+ "description": "follow-up plan_BMI management",
21
+ "time": 1283313600
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+ }],
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+ "conditions": [{
24
+ "codes": {
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+ "ICD-10-CM": [
26
+ "E11.9"
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+ ],
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+ "ICD-9-CM": [
29
+ "250"
30
+ ],
31
+ "SNOMED-CT": [
32
+ "73211009"
33
+ ]
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+ },
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+ "description": "diabetes",
36
+ "status": "active",
37
+ "time": 1270094400
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+ }, {
39
+ "codes": {
40
+ "ICD-10-CM": [
41
+ "J45"
42
+ ],
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+ "ICD-9-CM": [
44
+ "493.92"
45
+ ],
46
+ "SNOMED-CT": [
47
+ "195979001"
48
+ ]
49
+ },
50
+ "description": "Asthma",
51
+ "status": "active",
52
+ "time": 1270094400
53
+ }, {
54
+ "codes": {
55
+ "ICD-10-CM": [
56
+ "I10"
57
+ ],
58
+ "ICD-9-CM": [
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393
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403
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404
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421
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