hqmf2js 1.3.0 → 1.4.0
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- checksums.yaml +5 -13
- data/.travis.yml +1 -1
- data/Gemfile +1 -25
- data/Gemfile.lock +170 -146
- data/app/assets/javascripts/crosswalk.js.coffee +17 -19
- data/app/assets/javascripts/custom_calculations.js.coffee +44 -17
- data/app/assets/javascripts/hqmf_util.js.coffee +559 -161
- data/app/assets/javascripts/logging_utils.js.coffee +6 -4
- data/app/assets/javascripts/patient_api_extension.js.coffee +41 -9
- data/app/assets/javascripts/specifics.js.coffee +163 -69
- data/hqmf2js.gemspec +7 -12
- data/lib/assets/javascripts/libraries/map_reduce_utils.js +151 -64
- data/lib/generator/characteristic.js.erb +23 -12
- data/lib/generator/codes_to_json.rb +1 -1
- data/lib/generator/data_criteria.js.erb +15 -3
- data/lib/generator/derived_data.js.erb +5 -0
- data/lib/generator/execution.rb +41 -11
- data/lib/generator/js.rb +74 -41
- data/lib/generator/patient_data.js.erb +1 -1
- data/lib/hqmf2js.rb +0 -1
- data/lib/hquery/engine.rb +3 -1
- data/lib/tasks/convert.rake +20 -12
- data/test/fixtures/NQF59New.json +1423 -0
- data/test/fixtures/fulfills.xml +917 -0
- data/test/fixtures/patients/larry_vanderman.json +573 -654
- data/test/{simplecov.rb → simplecov_init.rb} +0 -0
- data/test/test_helper.rb +2 -3
- data/test/unit/cmd_test.rb +145 -19
- data/test/unit/codes_to_json_test.rb +12 -12
- data/test/unit/custom_calculations_test.rb +2 -6
- data/test/unit/effective_date_test.rb +3 -4
- data/test/unit/erb_context_test.rb +12 -12
- data/test/unit/filter_by_reference_test.rb +39 -0
- data/test/unit/hqmf_from_json_javascript_test.rb +2 -1
- data/test/unit/hqmf_javascript_test.rb +12 -13
- data/test/unit/js_object_test.rb +2 -2
- data/test/unit/library_function_test.rb +210 -42
- data/test/unit/specifics_test.rb +402 -321
- metadata +57 -15
- data/config/warble.rb +0 -144
metadata
CHANGED
@@ -1,17 +1,57 @@
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|
1
1
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--- !ruby/object:Gem::Specification
|
2
2
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name: hqmf2js
|
3
3
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version: !ruby/object:Gem::Version
|
4
|
-
version: 1.
|
4
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+
version: 1.4.0
|
5
5
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platform: ruby
|
6
6
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authors:
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7
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-
-
|
8
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-
- Andre Quina
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9
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-
- Andy Gregorowicz
|
7
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+
- The MITRE Corporation
|
10
8
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autorequire:
|
11
9
|
bindir: bin
|
12
10
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cert_chain: []
|
13
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-
date:
|
14
|
-
dependencies:
|
11
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+
date: 2017-11-16 00:00:00.000000000 Z
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12
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+
dependencies:
|
13
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+
- !ruby/object:Gem::Dependency
|
14
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+
name: rails
|
15
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+
requirement: !ruby/object:Gem::Requirement
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16
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+
requirements:
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17
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+
- - "~>"
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18
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+
- !ruby/object:Gem::Version
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19
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+
version: '4.2'
|
20
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+
type: :runtime
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+
prerelease: false
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22
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+
version_requirements: !ruby/object:Gem::Requirement
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+
requirements:
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+
- - "~>"
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+
- !ruby/object:Gem::Version
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+
version: '4.2'
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+
- !ruby/object:Gem::Dependency
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+
name: health-data-standards
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+
requirement: !ruby/object:Gem::Requirement
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+
requirements:
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+
- - "~>"
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+
- !ruby/object:Gem::Version
|
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+
version: '4.0'
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+
type: :runtime
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+
prerelease: false
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+
version_requirements: !ruby/object:Gem::Requirement
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+
requirements:
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+
- - "~>"
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39
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+
- !ruby/object:Gem::Version
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+
version: '4.0'
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+
- !ruby/object:Gem::Dependency
|
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+
name: hquery-patient-api
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+
requirement: !ruby/object:Gem::Requirement
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44
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+
requirements:
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45
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+
- - "~>"
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46
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+
- !ruby/object:Gem::Version
|
47
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+
version: '1.1'
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+
type: :runtime
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+
prerelease: false
|
50
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+
version_requirements: !ruby/object:Gem::Requirement
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requirements:
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+
- - "~>"
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53
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+
- !ruby/object:Gem::Version
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+
version: '1.1'
|
15
55
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description: A library for converting HQMF files to executable JavaScript suitable
|
16
56
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for use with the hQuery Gateway
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17
57
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email: hquery-talk@googlegroups.com
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@@ -19,8 +59,8 @@ executables: []
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extensions: []
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extra_rdoc_files: []
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21
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files:
|
22
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-
- .gitignore
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-
- .travis.yml
|
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+
- ".gitignore"
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+
- ".travis.yml"
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- Gemfile
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25
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- Gemfile.lock
|
26
66
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- README.md
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@@ -34,7 +74,6 @@ files:
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34
74
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- app/assets/javascripts/specifics.js.coffee
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75
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- app/assets/javascripts/underscore.js
|
36
76
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- bin/hqmf2js.rb
|
37
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-
- config/warble.rb
|
38
77
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- hqmf2js.gemspec
|
39
78
|
- lib/assets/javascripts/libraries/map_reduce_utils.js
|
40
79
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- lib/config/codes.xml
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@@ -55,10 +94,12 @@ files:
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- lib/tasks/codes.rake
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56
95
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- lib/tasks/coffee.rake
|
57
96
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- lib/tasks/convert.rake
|
97
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+
- test/fixtures/NQF59New.json
|
58
98
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- test/fixtures/NQF59New.xml
|
59
99
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- test/fixtures/codes/codes.json
|
60
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|
- test/fixtures/codes/codes.xls
|
61
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|
- test/fixtures/codes/codes.xml
|
102
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+
- test/fixtures/fulfills.xml
|
62
103
|
- test/fixtures/i2b2.xml
|
63
104
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- test/fixtures/invalid/missing_id.xml
|
64
105
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- test/fixtures/invalid/unknown_criteria_type.xml
|
@@ -77,20 +118,22 @@ files:
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77
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- test/fixtures/json/data_criteria/temporals_with_anynonnull.json
|
78
119
|
- test/fixtures/patients/francis_drake.json
|
79
120
|
- test/fixtures/patients/larry_vanderman.json
|
80
|
-
- test/
|
121
|
+
- test/simplecov_init.rb
|
81
122
|
- test/test_helper.rb
|
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123
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- test/unit/cmd_test.rb
|
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124
|
- test/unit/codes_to_json_test.rb
|
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125
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- test/unit/custom_calculations_test.rb
|
85
126
|
- test/unit/effective_date_test.rb
|
86
127
|
- test/unit/erb_context_test.rb
|
128
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+
- test/unit/filter_by_reference_test.rb
|
87
129
|
- test/unit/hqmf_from_json_javascript_test.rb
|
88
130
|
- test/unit/hqmf_javascript_test.rb
|
89
131
|
- test/unit/js_object_test.rb
|
90
132
|
- test/unit/library_function_test.rb
|
91
133
|
- test/unit/specifics_test.rb
|
92
134
|
homepage: http://github.com/hquery/hqmf2js
|
93
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-
licenses:
|
135
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+
licenses:
|
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+
- Apache-2.0
|
94
137
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metadata: {}
|
95
138
|
post_install_message:
|
96
139
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rdoc_options: []
|
@@ -98,19 +141,18 @@ require_paths:
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|
98
141
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- lib
|
99
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required_ruby_version: !ruby/object:Gem::Requirement
|
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143
|
requirements:
|
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-
- -
|
144
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+
- - ">="
|
102
145
|
- !ruby/object:Gem::Version
|
103
146
|
version: '0'
|
104
147
|
required_rubygems_version: !ruby/object:Gem::Requirement
|
105
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requirements:
|
106
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-
- -
|
149
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+
- - ">="
|
107
150
|
- !ruby/object:Gem::Version
|
108
151
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version: '0'
|
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152
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requirements: []
|
110
153
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rubyforge_project:
|
111
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-
rubygems_version: 2.
|
154
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+
rubygems_version: 2.6.14
|
112
155
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signing_key:
|
113
156
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specification_version: 4
|
114
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summary: A library for converting HQMF files to JavaScript
|
115
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test_files: []
|
116
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-
has_rdoc:
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data/config/warble.rb
DELETED
@@ -1,144 +0,0 @@
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1
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-
# Disable Rake-environment-task framework detection by uncommenting/setting to false
|
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# Warbler.framework_detection = false
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-
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# Warbler web application assembly configuration file
|
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Warbler::Config.new do |config|
|
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# Features: additional options controlling how the jar is built.
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# Currently the following features are supported:
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# - gemjar: package the gem repository in a jar file in WEB-INF/lib
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# - executable: embed a web server and make the war executable
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# - compiled: compile .rb files to .class files
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# config.features = %w(gemjar)
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# Application directories to be included in the webapp.
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config.dirs = %w(app bin config lib)
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# Additional files/directories to include, above those in config.dirs
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# config.includes = FileList["db"]
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# Additional files/directories to exclude
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config.excludes = FileList["lib/tasks/*"]
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# Additional Java .jar files to include. Note that if .jar files are placed
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# in lib (and not otherwise excluded) then they need not be mentioned here.
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# JRuby and JRuby-Rack are pre-loaded in this list. Be sure to include your
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# own versions if you directly set the value
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# config.java_libs += FileList["lib/java/*.jar"]
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# Loose Java classes and miscellaneous files to be included.
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# config.java_classes = FileList["target/classes/**.*"]
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# One or more pathmaps defining how the java classes should be copied into
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# the archive. The example pathmap below accompanies the java_classes
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# configuration above. See http://rake.rubyforge.org/classes/String.html#M000017
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# for details of how to specify a pathmap.
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# config.pathmaps.java_classes << "%{target/classes/,}p"
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-
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# Bundler support is built-in. If Warbler finds a Gemfile in the
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# project directory, it will be used to collect the gems to bundle
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# in your application. If you wish to explicitly disable this
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# functionality, uncomment here.
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# config.bundler = false
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# An array of Bundler groups to avoid including in the war file.
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# Defaults to ["development", "test"].
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# config.bundle_without = []
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-
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# Other gems to be included. If you don't use Bundler or a gemspec
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# file, you need to tell Warbler which gems your application needs
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# so that they can be packaged in the archive.
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# For Rails applications, the Rails gems are included by default
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# unless the vendor/rails directory is present.
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# config.gems += ["activerecord-jdbcmysql-adapter", "jruby-openssl"]
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# config.gems << "tzinfo"
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-
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# Uncomment this if you don't want to package rails gem.
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# config.gems -= ["rails"]
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# The most recent versions of gems are used.
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# You can specify versions of gems by using a hash assignment:
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# config.gems["rails"] = "2.3.10"
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# You can also use regexps or Gem::Dependency objects for flexibility or
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# finer-grained control.
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# config.gems << /^merb-/
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# config.gems << Gem::Dependency.new("merb-core", "= 0.9.3")
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# Include gem dependencies not mentioned specifically. Default is
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# true, uncomment to turn off.
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# config.gem_dependencies = false
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# Array of regular expressions matching relative paths in gems to be
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# excluded from the war. Defaults to empty, but you can set it like
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# below, which excludes test files.
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# config.gem_excludes = [/^(test|spec)\//]
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# Pathmaps for controlling how application files are copied into the archive
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# config.pathmaps.application = ["WEB-INF/%p"]
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# Name of the archive (without the extension). Defaults to the basename
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# of the project directory.
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config.jar_name = "hqmf2js"
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-
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# Name of the MANIFEST.MF template for the war file. Defaults to a simple
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# MANIFEST.MF that contains the version of Warbler used to create the war file.
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# config.manifest_file = "config/MANIFEST.MF"
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-
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# When using the 'compiled' feature and specified, only these Ruby
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# files will be compiled. Default is to compile all \.rb files in
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# the application.
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# config.compiled_ruby_files = FileList['app/**/*.rb']
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-
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# === War files only below here ===
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# Path to the pre-bundled gem directory inside the war file. Default
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# is 'WEB-INF/gems'. Specify path if gems are already bundled
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# before running Warbler. This also sets 'gem.path' inside web.xml.
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# config.gem_path = "WEB-INF/vendor/bundler_gems"
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-
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# Files for WEB-INF directory (next to web.xml). This contains
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# web.xml by default. If there is an .erb-File it will be processed
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# with webxml-config. You may want to exclude this file via
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# config.excludes.
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# config.webinf_files += FileList["jboss-web.xml"]
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-
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# Files to be included in the root of the webapp. Note that files in public
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# will have the leading 'public/' part of the path stripped during staging.
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-
# config.public_html = FileList["public/**/*", "doc/**/*"]
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-
|
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# Pathmaps for controlling how public HTML files are copied into the .war
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# config.pathmaps.public_html = ["%{public/,}p"]
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-
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# Value of RAILS_ENV for the webapp -- default as shown below
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# config.webxml.rails.env = ENV['RAILS_ENV'] || 'production'
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-
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# Application booter to use, one of :rack, :rails, or :merb (autodetected by default)
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# config.webxml.booter = :rails
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-
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# Set JRuby to run in 1.9 mode.
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# config.webxml.jruby.compat.version = "1.9"
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-
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# When using the :rack booter, "Rackup" script to use.
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# - For 'rackup.path', the value points to the location of the rackup
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# script in the web archive file. You need to make sure this file
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# gets included in the war, possibly by adding it to config.includes
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# or config.webinf_files above.
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# - For 'rackup', the rackup script you provide as an inline string
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# is simply embedded in web.xml.
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# The script is evaluated in a Rack::Builder to load the application.
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# Examples:
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# config.webxml.rackup.path = 'WEB-INF/hello.ru'
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# config.webxml.rackup = %{require './lib/demo'; run Rack::Adapter::Camping.new(Demo)}
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# config.webxml.rackup = require 'cgi' && CGI::escapeHTML(File.read("config.ru"))
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# Control the pool of Rails runtimes. Leaving unspecified means
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# the pool will grow as needed to service requests. It is recommended
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# that you fix these values when running a production server!
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# If you're using threadsafe! mode, you probably don't want to set these values,
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# since 1 runtime(default for threadsafe mode) will be enough.
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# config.webxml.jruby.min.runtimes = 2
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# config.webxml.jruby.max.runtimes = 4
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# JNDI data source name
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# config.webxml.jndi = 'jdbc/rails'
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end
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