hqmf2js 1.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/.gitignore +10 -0
- data/.travis.yml +17 -0
- data/Gemfile +41 -0
- data/Gemfile.lock +202 -0
- data/README.md +7 -0
- data/Rakefile +22 -0
- data/VERSION +1 -0
- data/app/assets/javascripts/hqmf_util.js.coffee +776 -0
- data/app/assets/javascripts/logging_utils.js.coffee +150 -0
- data/app/assets/javascripts/patient_api_extension.js.coffee +36 -0
- data/app/assets/javascripts/specifics.js.coffee +462 -0
- data/bin/hqmf2js.rb +25 -0
- data/config/warble.rb +144 -0
- data/hqmf2js.gemspec +20 -0
- data/lib/config/codes.xml +1935 -0
- data/lib/generator/characteristic.js.erb +19 -0
- data/lib/generator/codes_to_json.rb +81 -0
- data/lib/generator/converter.rb +60 -0
- data/lib/generator/data_criteria.js.erb +47 -0
- data/lib/generator/derived_data.js.erb +5 -0
- data/lib/generator/js.rb +263 -0
- data/lib/generator/measure_period.js.erb +18 -0
- data/lib/generator/patient_data.js.erb +22 -0
- data/lib/generator/population_criteria.js.erb +4 -0
- data/lib/generator/precondition.js.erb +14 -0
- data/lib/hqmf2js.rb +20 -0
- data/lib/hquery/engine.rb +4 -0
- data/lib/tasks/codes.rake +12 -0
- data/lib/tasks/coffee.rake +15 -0
- data/lib/tasks/convert.rake +47 -0
- data/lib/tasks/cover_me.rake +8 -0
- data/test/fixtures/NQF59New.xml +1047 -0
- data/test/fixtures/codes/codes.xls +0 -0
- data/test/fixtures/codes/codes.xml +1941 -0
- data/test/fixtures/i2b2.xml +305 -0
- data/test/fixtures/invalid/missing_id.xml +18 -0
- data/test/fixtures/invalid/unknown_criteria_type.xml +16 -0
- data/test/fixtures/invalid/unknown_demographic_entry.xml +16 -0
- data/test/fixtures/invalid/unknown_population_type.xml +9 -0
- data/test/fixtures/invalid/unknown_value_type.xml +18 -0
- data/test/fixtures/js/59New.js +366 -0
- data/test/fixtures/js/test1.js +356 -0
- data/test/fixtures/js/test2.js +366 -0
- data/test/fixtures/json/0043.json +6 -0
- data/test/fixtures/json/0043_hqmf1.json +1 -0
- data/test/fixtures/json/0043_hqmf2.json +172 -0
- data/test/fixtures/json/59New.json +1352 -0
- data/test/fixtures/patient_api.js +2823 -0
- data/test/fixtures/patients/francis_drake.json +1180 -0
- data/test/fixtures/patients/larry_vanderman.json +645 -0
- data/test/test_helper.rb +58 -0
- data/test/unit/codes_to_json_test.rb +38 -0
- data/test/unit/effective_date_test.rb +48 -0
- data/test/unit/hqmf_from_json_javascript_test.rb +108 -0
- data/test/unit/hqmf_javascript_test.rb +175 -0
- data/test/unit/library_function_test.rb +553 -0
- data/test/unit/specifics_test.rb +757 -0
- metadata +183 -0
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<?xml version="1.0" encoding="UTF-8"?>
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<QualityMeasureDocument xmlns="urn:hl7-org:v3"
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xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" classCode="DOC">
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<typeId extension="POQM_HD00001" root="2.16.840.1.113883.1.3"/>
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<id root="2.16.840.1.113883.3.1619.5148.3.20120214.191303395.1"/>
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<code codeSystem="2.16.840.1.113883.6.1" code="57024-2"/>
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<title>Sample Quality Measure Document</title>
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<statusCode code="completed"/>
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<setId root="2.16.840.1.113883.3.1619.5148.3.20120214.191303395"/>
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<versionNumber value="1"/>
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<author contextControlCode="OP" typeCode="AUT">
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<assignedPerson classCode="ASSIGNED"/>
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</author>
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<custodian typeCode="CST">
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<assignedPerson classCode="ASSIGNED"/>
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</custodian>
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<controlVariable>
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<localVariableName>MeasurePeriod</localVariableName>
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<measurePeriod>
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<id extension="StartDate" root="0"/>
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<value>
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<width value="1" unit="a"/>
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</value>
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</measurePeriod>
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</controlVariable>
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<component>
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<measureDescriptionSection>
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<title>Measure Description Section</title>
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<text>This is a description of the measure.</text>
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</measureDescriptionSection>
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</component>
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<component>
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<dataCriteriaSection>
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<code codeSystem="2.16.840.1.113883.6.1" code="57025-9"/>
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<title>Data Criteria Section</title>
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<text>This section describes the data criteria.</text>
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<definition>
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<observationDefinition>
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<id extension="Demographics"
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root="2.16.840.1.113883.3.1619.5148.1"/>
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</observationDefinition>
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</definition>
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<definition>
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<encounterDefinition>
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<id extension="Encounters"
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</encounterDefinition>
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</definition>
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<definition>
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<observationDefinition>
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<id extension="Problems"
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</observationDefinition>
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</definition>
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<definition>
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<observationDefinition>
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<id extension="Allergies"
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</observationDefinition>
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</definition>
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<definition>
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<procedureDefinition>
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<id extension="Procedures"
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</procedureDefinition>
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<definition>
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<observationDefinition>
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<id extension="Results" root="2.16.840.1.113883.3.1619.5148.1"
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/>
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<definition>
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<observationDefinition>
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<id extension="Vitals" root="2.16.840.1.113883.3.1619.5148.1"
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/>
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</observationDefinition>
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</definition>
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<definition>
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<substanceAdministrationDefinition>
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<id extension="Medications"
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root="2.16.840.1.113883.3.1619.5148.1"/>
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</substanceAdministrationDefinition>
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</definition>
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<definition>
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<supplyDefinition>
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<id extension="RX" root="2.16.840.1.113883.3.1619.5148.1"/>
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</supplyDefinition>
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</definition>
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<entry>
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<localVariableName>StartDate</localVariableName>
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<observationCriteria>
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<id extension="StartDate" root="0"/>
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<code codeSystem="2.16.840.1.113883.6.1" code="52832-3"/>
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<value value="20110101" xsi:type="TS"/>
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</observationCriteria>
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</entry>
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<entry>
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<localVariableName>EndDate</localVariableName>
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<observationCriteria>
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<id extension="EndDate" root="0"/>
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<code codeSystem="2.16.840.1.113883.6.1" code="52833-1"/>
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<value value="20111231" xsi:type="TS"/>
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</observationCriteria>
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</entry>
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<entry>
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<localVariableName>_18-34_years_old_N100A3</localVariableName>
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<observationCriteria>
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<id extension="_18-34_years_old_N100A3"
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root="2.16.840.1.113883.3.1619.5148.3.20120214.191303395"/>
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<code displayName="Current Chronological Age"
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codeSystem="2.16.840.1.113883.6.96" code="424144002"/>
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<effectiveTime>
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<low value="20110101"/>
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<high value="20111231"/>
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</effectiveTime>
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<value xsi:type="IVL_PQ">
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<low unit="a" inclusive="true" value="18"/>
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<high unit="a" inclusive="false" value="35"/>
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</value>
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<definition>
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<observationReference moodCode="DEF">
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<id extension="Demographics"
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root="2.16.840.1.113883.3.1619.5148.1"/>
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</observationReference>
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</definition>
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</observationCriteria>
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</entry>
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<entry>
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<localVariableName>_35-44_years_old_N100BB</localVariableName>
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<observationCriteria>
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<id extension="_35-44_years_old_N100BB"
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root="2.16.840.1.113883.3.1619.5148.3.20120214.191303395"/>
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<code displayName="Current Chronological Age"
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codeSystem="2.16.840.1.113883.6.96" code="424144002"/>
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<effectiveTime>
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<low value="20110101"/>
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<high value="20111231"/>
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</effectiveTime>
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<value xsi:type="IVL_PQ">
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<low unit="a" inclusive="true" value="35"/>
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<high unit="a" inclusive="false" value="45"/>
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</value>
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<definition>
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<observationReference moodCode="DEF">
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<id extension="Demographics"
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root="2.16.840.1.113883.3.1619.5148.1"/>
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</observationReference>
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</definition>
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</observationCriteria>
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</entry>
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<entry>
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<localVariableName>_45-54_years_old_N100D3</localVariableName>
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<observationCriteria>
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<id extension="_45-54_years_old_N100D3"
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root="2.16.840.1.113883.3.1619.5148.3.20120214.191303395"/>
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<code displayName="Current Chronological Age"
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codeSystem="2.16.840.1.113883.6.96" code="424144002"/>
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<effectiveTime>
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<low value="20110101"/>
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<high value="20111231"/>
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</effectiveTime>
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<value xsi:type="IVL_PQ">
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<low unit="a" inclusive="true" value="45"/>
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<high unit="a" inclusive="false" value="55"/>
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</value>
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<definition>
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<observationReference moodCode="DEF">
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<id extension="Demographics"
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root="2.16.840.1.113883.3.1619.5148.1"/>
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</observationReference>
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</definition>
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</observationCriteria>
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</entry>
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<entry>
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<localVariableName>_55-64_years_old_N100EB</localVariableName>
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<observationCriteria>
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<id extension="_55-64_years_old_N100EB"
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root="2.16.840.1.113883.3.1619.5148.3.20120214.191303395"/>
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<code displayName="Current Chronological Age"
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codeSystem="2.16.840.1.113883.6.96" code="424144002"/>
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<effectiveTime>
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<low value="20110101"/>
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<high value="20111231"/>
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</effectiveTime>
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<value xsi:type="IVL_PQ">
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<low unit="a" inclusive="true" value="55"/>
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<high unit="a" inclusive="false" value="65"/>
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</value>
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<definition>
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<observationReference moodCode="DEF">
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<id extension="Demographics"
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root="2.16.840.1.113883.3.1619.5148.1"/>
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</observationReference>
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</definition>
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</entry>
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<entry>
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<localVariableName>Diabetes_mellitus_N1011B</localVariableName>
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<observationCriteria>
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<id extension="Diabetes_mellitus_N1011B"
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root="2.16.840.1.113883.3.1619.5148.3.20120214.191303395"/>
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<effectiveTime>
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<low value="20100101"/>
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<high value="20111231"/>
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</effectiveTime>
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<value valueSet="2.16.840.1.113883.3.1619.5148.19.2.103.250"
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codeSystemName="SNOMED-CT"
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codeSystem="2.16.840.1.113883.6.103"
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displayName="Diabetes mellitus" code="190416008" xsi:type="CD"/>
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<definition>
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<observationReference moodCode="DEF">
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<id extension="Problems"
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root="2.16.840.1.113883.3.1619.5148.1"/>
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</observationReference>
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</definition>
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</observationCriteria>
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</entry>
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<entry>
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<localVariableName>HGB_A1C_LOINC4548-4_GE_9_%_N1014B</localVariableName>
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<observationCriteria>
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<id extension="HGB_A1C_LOINC4548-4_GE_9_%_N1014B"
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root="2.16.840.1.113883.3.1619.5148.3.20120214.191303395"/>
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<code valueSet="2.16.840.1.113883.3.1619.5148.19.2.1.4548.4"
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codeSystemName="LOINC" codeSystem="2.16.840.1.113883.6.1"
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displayName="HGB A1C " code="4548-4"/>
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<effectiveTime>
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<low value="20110101"/>
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<high value="20111231"/>
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</effectiveTime>
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<value xsi:type="IVL_PQ">
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<low inclusive="true" unit="%" value="9"/>
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</value>
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<definition>
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<observationReference moodCode="DEF">
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<id extension="Results"
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root="2.16.840.1.113883.3.1619.5148.1"/>
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</observationReference>
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</definition>
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</observationCriteria>
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</entry>
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</dataCriteriaSection>
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</component>
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<component>
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<populationCriteriaSection>
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<code codeSystem="2.16.840.1.113883.6.1" code="57026-7"/>
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<title>Population Criteria Section</title>
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<text>This section describes the Initial Patient Population,
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Numerator, Denominator, Denominator Exceptions, and Measure
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Populations</text>
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<entry>
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<patientPopulationCriteria>
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<id extension="IPP"
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root="2.16.840.1.113883.3.1619.5148.3.20120214.191303395"/>
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<precondition>
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<atLeastOneTrue>
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<precondition>
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<id extension="_18-34_years_old_N100A3"
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root="2.16.840.1.113883.3.1619.5148.3.20120214.191303395"
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/>
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</observationReference>
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</precondition>
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<precondition>
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<observationReference>
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<id extension="_35-44_years_old_N100BB"
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root="2.16.840.1.113883.3.1619.5148.3.20120214.191303395"
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/>
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</observationReference>
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</precondition>
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<precondition>
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<observationReference>
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<id extension="_45-54_years_old_N100D3"
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root="2.16.840.1.113883.3.1619.5148.3.20120214.191303395"
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/>
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</observationReference>
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</precondition>
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<precondition>
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<observationReference>
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|
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<id extension="_55-64_years_old_N100EB"
|
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|
+
root="2.16.840.1.113883.3.1619.5148.3.20120214.191303395"
|
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+
/>
|
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283
|
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</observationReference>
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</precondition>
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</atLeastOneTrue>
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</precondition>
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|
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<precondition>
|
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<observationReference>
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|
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<id extension="Diabetes_mellitus_N1011B"
|
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|
+
root="2.16.840.1.113883.3.1619.5148.3.20120214.191303395"
|
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+
/>
|
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</observationReference>
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</precondition>
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|
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<!-- <precondition>
|
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<observationReference>
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|
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<id extension="HGB_A1C_LOINC4548-4_GE_9_%_N1014B"
|
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|
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root="2.16.840.1.113883.3.1619.5148.3.20120214.191303395"
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/>
|
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</observationReference>
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</precondition>-->
|
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</patientPopulationCriteria>
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</entry>
|
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|
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</populationCriteriaSection>
|
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|
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</component>
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|
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</QualityMeasureDocument>
|
|
@@ -0,0 +1,18 @@
|
|
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1
|
+
<entry xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
|
|
2
|
+
xmlns="urn:hl7-org:v3">
|
|
3
|
+
<localVariableName>HbA1C</localVariableName>
|
|
4
|
+
<subsetCode code="RECENT"/>
|
|
5
|
+
<observationCriteria>
|
|
6
|
+
<id root="0"/>
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|
7
|
+
<code valueSet="2.16.840.1.113883.3.464.1.72"/>
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|
8
|
+
<statusCode code="completed"/>
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|
9
|
+
<value xsi:type="IVL_PQ">
|
|
10
|
+
<low value="9" unit="%"/>
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|
11
|
+
</value>
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|
12
|
+
<definition>
|
|
13
|
+
<observationReference moodCode="DEF">
|
|
14
|
+
<id root="0" extension="LabResults"/>
|
|
15
|
+
</observationReference>
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|
16
|
+
</definition>
|
|
17
|
+
</observationCriteria>
|
|
18
|
+
</entry>
|
|
@@ -0,0 +1,16 @@
|
|
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1
|
+
<entry xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
|
|
2
|
+
xmlns="urn:hl7-org:v3">
|
|
3
|
+
<localVariableName>blueEyes</localVariableName>
|
|
4
|
+
<observationCriteria>
|
|
5
|
+
<id root="0" extension="blueEyes"/>
|
|
6
|
+
<code code="1234567" codeSystem="1.2.3.4"
|
|
7
|
+
displayName="Eyes"/>
|
|
8
|
+
<value xsi:type="CD" codeSystem="1.2.3.4"
|
|
9
|
+
code="B"/>
|
|
10
|
+
<definition>
|
|
11
|
+
<observationReference moodCode="DEF">
|
|
12
|
+
<id root="0" extension="Foo"/>
|
|
13
|
+
</observationReference>
|
|
14
|
+
</definition>
|
|
15
|
+
</observationCriteria>
|
|
16
|
+
</entry>
|
|
@@ -0,0 +1,16 @@
|
|
|
1
|
+
<entry xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
|
|
2
|
+
xmlns="urn:hl7-org:v3">
|
|
3
|
+
<localVariableName>blueEyes</localVariableName>
|
|
4
|
+
<observationCriteria>
|
|
5
|
+
<id root="0" extension="blueEyes"/>
|
|
6
|
+
<code code="1234567" codeSystem="1.2.3.4"
|
|
7
|
+
displayName="Eyes"/>
|
|
8
|
+
<value xsi:type="CD" codeSystem="1.2.3.4"
|
|
9
|
+
code="B"/>
|
|
10
|
+
<definition>
|
|
11
|
+
<observationReference moodCode="DEF">
|
|
12
|
+
<id root="0" extension="Demographics"/>
|
|
13
|
+
</observationReference>
|
|
14
|
+
</definition>
|
|
15
|
+
</observationCriteria>
|
|
16
|
+
</entry>
|
|
@@ -0,0 +1,18 @@
|
|
|
1
|
+
<entry xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
|
|
2
|
+
xmlns="urn:hl7-org:v3">
|
|
3
|
+
<localVariableName>HbA1C</localVariableName>
|
|
4
|
+
<subsetCode code="RECENT"/>
|
|
5
|
+
<observationCriteria>
|
|
6
|
+
<id root="0" extension="HbA1C"/>
|
|
7
|
+
<code valueSet="2.16.840.1.113883.3.464.1.72"/>
|
|
8
|
+
<statusCode code="completed"/>
|
|
9
|
+
<value xsi:type="Foo">
|
|
10
|
+
<low value="9" unit="%"/>
|
|
11
|
+
</value>
|
|
12
|
+
<definition>
|
|
13
|
+
<observationReference moodCode="DEF">
|
|
14
|
+
<id root="0" extension="LabResults"/>
|
|
15
|
+
</observationReference>
|
|
16
|
+
</definition>
|
|
17
|
+
</observationCriteria>
|
|
18
|
+
</entry>
|