hqmf2js 1.0.0
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- data/.gitignore +10 -0
- data/.travis.yml +17 -0
- data/Gemfile +41 -0
- data/Gemfile.lock +202 -0
- data/README.md +7 -0
- data/Rakefile +22 -0
- data/VERSION +1 -0
- data/app/assets/javascripts/hqmf_util.js.coffee +776 -0
- data/app/assets/javascripts/logging_utils.js.coffee +150 -0
- data/app/assets/javascripts/patient_api_extension.js.coffee +36 -0
- data/app/assets/javascripts/specifics.js.coffee +462 -0
- data/bin/hqmf2js.rb +25 -0
- data/config/warble.rb +144 -0
- data/hqmf2js.gemspec +20 -0
- data/lib/config/codes.xml +1935 -0
- data/lib/generator/characteristic.js.erb +19 -0
- data/lib/generator/codes_to_json.rb +81 -0
- data/lib/generator/converter.rb +60 -0
- data/lib/generator/data_criteria.js.erb +47 -0
- data/lib/generator/derived_data.js.erb +5 -0
- data/lib/generator/js.rb +263 -0
- data/lib/generator/measure_period.js.erb +18 -0
- data/lib/generator/patient_data.js.erb +22 -0
- data/lib/generator/population_criteria.js.erb +4 -0
- data/lib/generator/precondition.js.erb +14 -0
- data/lib/hqmf2js.rb +20 -0
- data/lib/hquery/engine.rb +4 -0
- data/lib/tasks/codes.rake +12 -0
- data/lib/tasks/coffee.rake +15 -0
- data/lib/tasks/convert.rake +47 -0
- data/lib/tasks/cover_me.rake +8 -0
- data/test/fixtures/NQF59New.xml +1047 -0
- data/test/fixtures/codes/codes.xls +0 -0
- data/test/fixtures/codes/codes.xml +1941 -0
- data/test/fixtures/i2b2.xml +305 -0
- data/test/fixtures/invalid/missing_id.xml +18 -0
- data/test/fixtures/invalid/unknown_criteria_type.xml +16 -0
- data/test/fixtures/invalid/unknown_demographic_entry.xml +16 -0
- data/test/fixtures/invalid/unknown_population_type.xml +9 -0
- data/test/fixtures/invalid/unknown_value_type.xml +18 -0
- data/test/fixtures/js/59New.js +366 -0
- data/test/fixtures/js/test1.js +356 -0
- data/test/fixtures/js/test2.js +366 -0
- data/test/fixtures/json/0043.json +6 -0
- data/test/fixtures/json/0043_hqmf1.json +1 -0
- data/test/fixtures/json/0043_hqmf2.json +172 -0
- data/test/fixtures/json/59New.json +1352 -0
- data/test/fixtures/patient_api.js +2823 -0
- data/test/fixtures/patients/francis_drake.json +1180 -0
- data/test/fixtures/patients/larry_vanderman.json +645 -0
- data/test/test_helper.rb +58 -0
- data/test/unit/codes_to_json_test.rb +38 -0
- data/test/unit/effective_date_test.rb +48 -0
- data/test/unit/hqmf_from_json_javascript_test.rb +108 -0
- data/test/unit/hqmf_javascript_test.rb +175 -0
- data/test/unit/library_function_test.rb +553 -0
- data/test/unit/specifics_test.rb +757 -0
- metadata +183 -0
data/.gitignore
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data/.travis.yml
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data/Gemfile
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source "http://rubygems.org"
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gem 'rails'
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group :assets do
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gem 'sass-rails'
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gem 'coffee-rails'
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gem 'uglifier'
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end
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#gem "hquery-patient-api", :git => 'http://github.com/pophealth/patientapi.git', :branch => 'develop'
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#gem 'hquery-patient-api', :path => '../patientapi'
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gem 'hquery-patient-api', '~> 0.3.0'
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#gem 'hqmf-parser', :git => 'https://github.com/pophealth/hqmf-parser.git', :branch => 'develop'
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#gem 'hqmf-parser', :path => '../hqmf-parser'
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gem 'hqmf-parser', '~> 1.0.2'
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#gem "health-data-standards", :git => 'http://github.com/projectcypress/health-data-standards.git', :branch => 'develop'
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gem "health-data-standards", '~> 2.1.2'
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gem 'nokogiri'
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gem 'sprockets'
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gem 'coffee-script'
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gem 'uglifier'
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gem 'tilt'
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gem 'rake'
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gem 'pry'
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group :test do
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gem 'minitest'
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gem 'turn', :require => false
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gem 'cover_me', '~> 1.2.0'
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gem 'awesome_print', :require => 'ap'
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platforms :ruby do
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gem "therubyracer", :require => 'v8'
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end
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platforms :jruby do
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gem "therubyrhino"
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end
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end
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data/Gemfile.lock
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GEM
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remote: http://rubygems.org/
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specs:
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actionmailer (3.2.3)
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actionpack (= 3.2.3)
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mail (~> 2.4.4)
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actionpack (3.2.3)
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activemodel (= 3.2.3)
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activesupport (= 3.2.3)
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builder (~> 3.0.0)
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erubis (~> 2.7.0)
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journey (~> 1.0.1)
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rack (~> 1.4.0)
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rack-cache (~> 1.2)
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rack-test (~> 0.6.1)
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sprockets (~> 2.1.2)
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activemodel (3.2.3)
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activesupport (= 3.2.3)
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builder (~> 3.0.0)
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activerecord (3.2.3)
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activemodel (= 3.2.3)
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activesupport (= 3.2.3)
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arel (~> 3.0.2)
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tzinfo (~> 0.3.29)
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activeresource (3.2.3)
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activemodel (= 3.2.3)
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activesupport (= 3.2.3)
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activesupport (3.2.3)
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i18n (~> 0.6)
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multi_json (~> 1.0)
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ansi (1.4.2)
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arel (3.0.2)
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awesome_print (1.0.2)
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builder (3.0.3)
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choice (0.1.6)
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coderay (1.0.6)
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coffee-rails (3.2.2)
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coffee-script (>= 2.2.0)
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railties (~> 3.2.0)
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coffee-script (2.2.0)
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coffee-script-source
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execjs
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coffee-script-source (1.3.1)
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configatron (2.9.1)
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yamler (>= 0.1.0)
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cover_me (1.2.0)
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configatron
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hashie
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erubis (2.7.0)
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execjs (1.3.0)
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multi_json (~> 1.0)
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faraday (0.8.4)
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multipart-post (~> 1.1)
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google-spreadsheet-ruby (0.1.8)
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nokogiri (>= 1.4.3.1)
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oauth (>= 0.3.6)
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oauth2 (>= 0.5.0)
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hashie (1.2.0)
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health-data-standards (2.1.2)
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builder (~> 3.0.0)
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erubis (~> 2.7.0)
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mongoid (~> 3.0.6)
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nokogiri (~> 1.5.5)
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rest-client (~> 1.6.7)
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uuid (~> 2.3.5)
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hike (1.2.1)
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hqmf-parser (1.0.2)
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google-spreadsheet-ruby (= 0.1.8)
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roo (= 1.10.1)
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rubyzip
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spreadsheet (= 0.6.8)
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hquery-patient-api (0.3.0)
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httpauth (0.2.0)
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i18n (0.6.1)
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journey (1.0.3)
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json (1.7.3)
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jwt (0.1.5)
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multi_json (>= 1.0)
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libv8 (3.3.10.4)
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log4r (1.1.10)
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macaddr (1.6.1)
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systemu (~> 2.5.0)
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mail (2.4.4)
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i18n (>= 0.4.0)
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mime-types (~> 1.16)
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treetop (~> 1.4.8)
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method_source (0.7.1)
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mime-types (1.18)
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minitest (2.12.1)
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mongoid (3.0.10)
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activemodel (~> 3.1)
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moped (~> 1.1)
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origin (~> 1.0)
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tzinfo (~> 0.3.22)
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moped (1.2.7)
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multi_json (1.3.6)
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multipart-post (1.1.5)
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nokogiri (1.5.5)
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oauth (0.4.7)
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oauth2 (0.8.0)
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faraday (~> 0.8)
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httpauth (~> 0.1)
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jwt (~> 0.1.4)
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origin (1.0.10)
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polyglot (0.3.3)
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pry (0.9.9.3)
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coderay (~> 1.0.5)
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method_source (~> 0.7.1)
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slop (>= 2.4.4, < 3)
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rack (1.4.1)
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rack-cache (1.2)
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rack (>= 0.4)
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rack-ssl (1.3.2)
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rack
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rack-test (0.6.1)
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rack (>= 1.0)
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rails (3.2.3)
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actionmailer (= 3.2.3)
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actionpack (= 3.2.3)
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activerecord (= 3.2.3)
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activeresource (= 3.2.3)
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activesupport (= 3.2.3)
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bundler (~> 1.0)
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railties (= 3.2.3)
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railties (3.2.3)
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actionpack (= 3.2.3)
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activesupport (= 3.2.3)
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rack-ssl (~> 1.3.2)
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rake (>= 0.8.7)
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rdoc (~> 3.4)
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thor (~> 0.14.6)
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rake (0.9.2.2)
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rdoc (3.12)
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json (~> 1.4)
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rest-client (1.6.7)
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mime-types (>= 1.16)
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roo (1.10.1)
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choice (>= 0.1.4)
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google-spreadsheet-ruby (>= 0.1.5)
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nokogiri (>= 1.5.0)
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rubyzip (>= 0.9.4)
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spreadsheet (> 0.6.4)
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todonotes (>= 0.1.0)
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ruby-ole (1.2.11.4)
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rubyzip (0.9.9)
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sass (3.1.15)
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sass-rails (3.2.5)
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sass (>= 3.1.10)
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tilt (~> 1.3)
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slop (2.4.4)
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spreadsheet (0.6.8)
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ruby-ole (>= 1.0)
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sprockets (2.1.2)
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hike (~> 1.2)
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rack (~> 1.0)
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systemu (2.5.2)
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therubyracer (0.10.2)
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libv8 (~> 3.3.10)
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thor (0.14.6)
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tilt (1.3.3)
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log4r
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treetop (1.4.10)
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polyglot
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polyglot (>= 0.3.1)
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turn (0.9.5)
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ansi
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tzinfo (0.3.33)
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uglifier (1.2.4)
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execjs (>= 0.3.0)
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multi_json (>= 1.0.2)
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uuid (2.3.5)
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macaddr (~> 1.0)
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yamler (0.1.0)
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PLATFORMS
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ruby
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DEPENDENCIES
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awesome_print
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coffee-rails
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coffee-script
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cover_me (~> 1.2.0)
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health-data-standards (~> 2.1.2)
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hqmf-parser (~> 1.0.2)
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hquery-patient-api (~> 0.3.0)
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minitest
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nokogiri
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pry
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rails
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rake
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sass-rails
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sprockets
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therubyracer
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therubyrhino
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tilt
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turn
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uglifier
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data/README.md
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This project is a library that will convert a declarative HQMF measure description into executable JavaScript suitable for use within the hQuery Gateway.
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Project Practices
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=================
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Please try to follow our [Coding Style Guides](http://github.com/eedrummer/styleguide). Additionally, we will be using git in a pattern similar to [Vincent Driessen's workflow](http://nvie.com/posts/a-successful-git-branching-model/). While feature branches are encouraged, they are not required to work on the project.
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data/Rakefile
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require 'rake'
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require 'rake/testtask'
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require 'sprockets'
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require 'tilt'
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require 'fileutils'
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require_relative 'lib/hqmf2js'
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# Pull in any rake task defined in lib/tasks
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Dir['lib/tasks/*.rake'].sort.each do |ext|
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load ext
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end
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$LOAD_PATH << File.expand_path("../test",__FILE__)
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desc "Run basic tests"
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Rake::TestTask.new("test_units") { |t|
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t.pattern = 'test/unit/*_test.rb'
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t.verbose = true
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t.warning = false
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}
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task :default => [:test_units,'cover_me:report']
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data/VERSION
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1
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0.1.0
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