health-data-standards 2.2.1 → 3.0.3
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- data/Gemfile +5 -0
- data/lib/health-data-standards.rb +55 -12
- data/lib/health-data-standards/export/c32.rb +7 -6
- data/lib/health-data-standards/export/cat_1.rb +18 -0
- data/lib/health-data-standards/export/ccda.rb +8 -8
- data/lib/health-data-standards/export/green_c32/entry.rb +8 -5
- data/lib/health-data-standards/export/green_c32/export_generator.rb +1 -1
- data/lib/health-data-standards/export/green_c32/record.rb +10 -7
- data/lib/health-data-standards/export/hdata/metadata.rb +7 -6
- data/lib/health-data-standards/export/helper/cat1_view_helper.rb +133 -0
- data/lib/health-data-standards/export/helper/gc32_view_helper.rb +39 -0
- data/lib/health-data-standards/export/helper/html_view_helper.rb +23 -0
- data/lib/health-data-standards/export/html.rb +22 -10
- data/lib/health-data-standards/export/qrda/entry_template_resolver.rb +31 -0
- data/lib/health-data-standards/export/qrda/hqmf-qrda-oids.json +638 -0
- data/lib/health-data-standards/export/rendering_context.rb +37 -3
- data/lib/health-data-standards/export/template_helper.rb +20 -23
- data/lib/health-data-standards/export/view_helper.rb +8 -42
- data/lib/health-data-standards/import/bundle/importer.rb +148 -0
- data/lib/health-data-standards/import/c32/care_goal_importer.rb +14 -26
- data/lib/health-data-standards/import/c32/condition_importer.rb +12 -51
- data/lib/health-data-standards/import/c32/immunization_importer.rb +9 -27
- data/lib/health-data-standards/import/c32/insurance_provider_importer.rb +24 -21
- data/lib/health-data-standards/import/c32/patient_importer.rb +27 -34
- data/lib/health-data-standards/import/cat1/diagnosis_active_importer.rb +19 -0
- data/lib/health-data-standards/import/cat1/diagnosis_inactive_importer.rb +19 -0
- data/lib/health-data-standards/import/cat1/diagnostic_study_order_importer.rb +24 -0
- data/lib/health-data-standards/import/cat1/encounter_order_importer.rb +24 -0
- data/lib/health-data-standards/import/cat1/entry_package.rb +25 -0
- data/lib/health-data-standards/import/cat1/gestational_age_importer.rb +42 -0
- data/lib/health-data-standards/import/cat1/lab_order_importer.rb +24 -0
- data/lib/health-data-standards/import/cat1/medication_dispensed_importer.rb +13 -0
- data/lib/health-data-standards/import/cat1/patient_importer.rb +104 -0
- data/lib/health-data-standards/import/cat1/procedure_intolerance_importer.rb +13 -0
- data/lib/health-data-standards/import/cat1/procedure_order_importer.rb +38 -0
- data/lib/health-data-standards/import/cat1/tobacco_use_importer.rb +19 -0
- data/lib/health-data-standards/import/ccda/allergy_importer.rb +2 -8
- data/lib/health-data-standards/import/ccda/care_goal_importer.rb +1 -1
- data/lib/health-data-standards/import/ccda/condition_importer.rb +2 -3
- data/lib/health-data-standards/import/ccda/encounter_importer.rb +2 -5
- data/lib/health-data-standards/import/ccda/immunization_importer.rb +1 -3
- data/lib/health-data-standards/import/ccda/insurance_provider_importer.rb +1 -1
- data/lib/health-data-standards/import/ccda/medical_equipment_importer.rb +2 -4
- data/lib/health-data-standards/import/ccda/medication_importer.rb +2 -4
- data/lib/health-data-standards/import/ccda/patient_importer.rb +1 -1
- data/lib/health-data-standards/import/ccda/procedure_importer.rb +2 -6
- data/lib/health-data-standards/import/ccda/result_importer.rb +2 -5
- data/lib/health-data-standards/import/ccda/vital_sign_importer.rb +2 -3
- data/lib/health-data-standards/import/cda/allergy_importer.rb +32 -0
- data/lib/health-data-standards/import/cda/condition_importer.rb +51 -0
- data/lib/health-data-standards/import/{c32 → cda}/encounter_importer.rb +9 -35
- data/lib/health-data-standards/import/cda/entry_finder.rb +22 -0
- data/lib/health-data-standards/import/{c32 → cda}/locatable_import_utils.rb +2 -3
- data/lib/health-data-standards/import/cda/medical_equipment_importer.rb +24 -0
- data/lib/health-data-standards/import/{c32 → cda}/medication_importer.rb +13 -15
- data/lib/health-data-standards/import/cda/narrative_reference_handler.rb +35 -0
- data/lib/health-data-standards/import/{c32 → cda}/organization_importer.rb +1 -1
- data/lib/health-data-standards/import/cda/procedure_importer.rb +35 -0
- data/lib/health-data-standards/import/{c32 → cda}/provider_importer.rb +4 -8
- data/lib/health-data-standards/import/cda/result_importer.rb +31 -0
- data/lib/health-data-standards/import/{c32 → cda}/section_importer.rb +26 -48
- data/lib/health-data-standards/import/{c32 → cda}/vital_sign_importer.rb +2 -3
- data/lib/health-data-standards/import/green_c32/section_importer.rb +8 -6
- data/lib/health-data-standards/import/provider_import_utils.rb +2 -2
- data/lib/health-data-standards/models/address.rb +1 -1
- data/lib/health-data-standards/models/condition.rb +7 -6
- data/lib/health-data-standards/models/cqm/bundle.rb +45 -0
- data/lib/health-data-standards/models/cqm/measure.rb +36 -0
- data/lib/health-data-standards/models/guarantor.rb +1 -0
- data/lib/health-data-standards/models/insurance_provider.rb +2 -0
- data/lib/health-data-standards/models/order_information.rb +2 -0
- data/lib/health-data-standards/models/record.rb +6 -5
- data/lib/health-data-standards/models/svs/value_set.rb +1 -1
- data/lib/health-data-standards/railtie.rb +11 -0
- data/lib/health-data-standards/tasks/bundle.rake +107 -0
- data/lib/health-data-standards/util/code_system_helper.rb +9 -1
- data/lib/hqmf-generator/attribute.xml.erb +11 -0
- data/lib/hqmf-generator/characteristic_criteria.xml.erb +21 -0
- data/lib/hqmf-generator/code.xml.erb +13 -0
- data/lib/hqmf-generator/condition_criteria.xml.erb +22 -0
- data/lib/hqmf-generator/derivation.xml.erb +6 -0
- data/lib/hqmf-generator/description.xml.erb +1 -0
- data/lib/hqmf-generator/document.xml.erb +63 -0
- data/lib/hqmf-generator/effective_time.xml.erb +4 -0
- data/lib/hqmf-generator/encounter_criteria.xml.erb +21 -0
- data/lib/hqmf-generator/field.xml.erb +28 -0
- data/lib/hqmf-generator/hqmf-generator.rb +292 -0
- data/lib/hqmf-generator/observation_criteria.xml.erb +25 -0
- data/lib/hqmf-generator/population_criteria.xml.erb +23 -0
- data/lib/hqmf-generator/precondition.xml.erb +14 -0
- data/lib/hqmf-generator/procedure_criteria.xml.erb +22 -0
- data/lib/hqmf-generator/reason.xml.erb +3 -0
- data/lib/hqmf-generator/reference.xml.erb +3 -0
- data/lib/hqmf-generator/source.xml.erb +6 -0
- data/lib/hqmf-generator/specific_occurrence.xml.erb +7 -0
- data/lib/hqmf-generator/subset.xml.erb +8 -0
- data/lib/hqmf-generator/substance_criteria.xml.erb +26 -0
- data/lib/hqmf-generator/supply_criteria.xml.erb +26 -0
- data/lib/hqmf-generator/template_id.xml.erb +5 -0
- data/lib/hqmf-generator/temporal_relationship.xml.erb +6 -0
- data/lib/hqmf-generator/value.xml.erb +24 -0
- data/lib/hqmf-generator/variable_criteria.xml.erb +12 -0
- data/lib/hqmf-model/attribute.rb +35 -0
- data/lib/hqmf-model/data_criteria.json +1123 -0
- data/lib/hqmf-model/data_criteria.rb +344 -0
- data/lib/hqmf-model/document.rb +178 -0
- data/lib/hqmf-model/population_criteria.rb +96 -0
- data/lib/hqmf-model/precondition.rb +91 -0
- data/lib/hqmf-model/types.rb +319 -0
- data/lib/hqmf-model/utilities.rb +52 -0
- data/lib/hqmf-parser.rb +56 -0
- data/lib/hqmf-parser/1.0/attribute.rb +68 -0
- data/lib/hqmf-parser/1.0/comparison.rb +34 -0
- data/lib/hqmf-parser/1.0/data_criteria.rb +92 -0
- data/lib/hqmf-parser/1.0/data_criteria_oid_xpath.json +91 -0
- data/lib/hqmf-parser/1.0/document.rb +203 -0
- data/lib/hqmf-parser/1.0/expression.rb +58 -0
- data/lib/hqmf-parser/1.0/observation.rb +61 -0
- data/lib/hqmf-parser/1.0/population_criteria.rb +75 -0
- data/lib/hqmf-parser/1.0/precondition.rb +89 -0
- data/lib/hqmf-parser/1.0/range.rb +65 -0
- data/lib/hqmf-parser/1.0/restriction.rb +160 -0
- data/lib/hqmf-parser/1.0/utilities.rb +41 -0
- data/lib/hqmf-parser/2.0/data_criteria.rb +319 -0
- data/lib/hqmf-parser/2.0/document.rb +165 -0
- data/lib/hqmf-parser/2.0/population_criteria.rb +53 -0
- data/lib/hqmf-parser/2.0/precondition.rb +44 -0
- data/lib/hqmf-parser/2.0/types.rb +223 -0
- data/lib/hqmf-parser/2.0/utilities.rb +30 -0
- data/lib/hqmf-parser/converter/pass1/data_criteria_converter.rb +252 -0
- data/lib/hqmf-parser/converter/pass1/document_converter.rb +185 -0
- data/lib/hqmf-parser/converter/pass1/population_criteria_converter.rb +165 -0
- data/lib/hqmf-parser/converter/pass1/precondition_converter.rb +173 -0
- data/lib/hqmf-parser/converter/pass1/precondition_extractor.rb +188 -0
- data/lib/hqmf-parser/converter/pass1/simple_data_criteria.rb +26 -0
- data/lib/hqmf-parser/converter/pass1/simple_operator.rb +89 -0
- data/lib/hqmf-parser/converter/pass1/simple_population_criteria.rb +10 -0
- data/lib/hqmf-parser/converter/pass1/simple_precondition.rb +51 -0
- data/lib/hqmf-parser/converter/pass1/simple_restriction.rb +64 -0
- data/lib/hqmf-parser/converter/pass2/comparison_converter.rb +112 -0
- data/lib/hqmf-parser/converter/pass2/operator_converter.rb +102 -0
- data/lib/hqmf-parser/parser.rb +54 -0
- data/lib/hqmf-parser/value_sets/value_set_parser.rb +241 -0
- data/lib/util/counter.rb +20 -0
- data/templates/{_allergies.c32.erb → c32/_allergies.c32.erb} +0 -0
- data/templates/{_allergies_no_current.c32.erb → c32/_allergies_no_current.c32.erb} +0 -0
- data/templates/{_care_goals.c32.erb → c32/_care_goals.c32.erb} +0 -0
- data/templates/{_code_with_reference.c32.erb → c32/_code_with_reference.c32.erb} +0 -0
- data/templates/{_conditions.c32.erb → c32/_conditions.c32.erb} +0 -0
- data/templates/{_conditions_no_current.c32.erb → c32/_conditions_no_current.c32.erb} +0 -0
- data/templates/{_encounters.c32.erb → c32/_encounters.c32.erb} +0 -0
- data/templates/{_immunizations.c32.erb → c32/_immunizations.c32.erb} +0 -0
- data/templates/{_medical_equipment.c32.erb → c32/_medical_equipment.c32.erb} +0 -0
- data/templates/{_medications.c32.erb → c32/_medications.c32.erb} +0 -0
- data/templates/{_medications_no_current.c32.erb → c32/_medications_no_current.c32.erb} +0 -0
- data/templates/{_narrative_block.c32.erb → c32/_narrative_block.c32.erb} +0 -0
- data/templates/{_procedures.c32.erb → c32/_procedures.c32.erb} +0 -0
- data/templates/{_results.c32.erb → c32/_results.c32.erb} +0 -0
- data/templates/{_social_history.c32.erb → c32/_social_history.c32.erb} +0 -0
- data/templates/{_vital_signs.c32.erb → c32/_vital_signs.c32.erb} +0 -0
- data/templates/{show.c32.erb → c32/show.c32.erb} +0 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.22.4.85.cat1.erb +18 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.1.cat1.erb +14 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.101.cat1.erb +25 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.103.cat1.erb +12 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.105.cat1.erb +60 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.11.cat1.erb +41 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.12.cat1.erb +50 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.13.cat1.erb +37 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.14.cat1.erb +35 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.17.cat1.erb +22 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.18.cat1.erb +21 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.2.cat1.erb +28 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.20.cat1.erb +20 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.22.cat1.erb +21 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.23.cat1.erb +71 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.28.cat1.erb +20 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.3.cat1.erb +24 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.31.cat1.erb +20 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.32.cat1.erb +15 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.34.cat1.erb +58 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.37.cat1.erb +20 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.38.cat1.erb +16 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.4.cat1.erb +27 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.40.cat1.erb +17 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.41.cat1.erb +38 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.42.cat1.erb +38 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.43.cat1.erb +24 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.44.cat1.erb +24 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.45.cat1.erb +26 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.46.cat1.erb +30 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.47.cat1.erb +26 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.51.cat1.erb +13 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.54.cat1.erb +16 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.55.cat1.erb +10 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.57.cat1.erb +19 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.59.cat1.erb +17 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.62.cat1.erb +36 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.63.cat1.erb +23 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.64.cat1.erb +29 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.66.cat1.erb +34 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.69.cat1.erb +23 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.7.cat1.erb +30 -0
- data/templates/cat1/_2.16.840.1.113883.10.20.24.3.76.cat1.erb +32 -0
- data/templates/cat1/_measures.cat1.erb +66 -0
- data/templates/cat1/_medication_details.cat1.erb +9 -0
- data/templates/cat1/_ordinality.cat1.erb +4 -0
- data/templates/cat1/_patient_data.cat1.erb +14 -0
- data/templates/cat1/_reason.cat1.erb +16 -0
- data/templates/cat1/_record_target.cat1.erb +39 -0
- data/templates/cat1/_reporting_parameters.cat1.erb +24 -0
- data/templates/cat1/_result_value.cat1.erb +16 -0
- data/templates/cat1/show.cat1.erb +125 -0
- data/templates/{_address.gc32.erb → gc32/_address.gc32.erb} +1 -1
- data/templates/gc32/_advance_directive.gc32.erb +5 -0
- data/templates/gc32/_allergy.gc32.erb +12 -0
- data/templates/{_care_goal.gc32.erb → gc32/_care_goal.gc32.erb} +1 -1
- data/templates/gc32/_condition.gc32.erb +10 -0
- data/templates/gc32/_encounter.gc32.erb +28 -0
- data/templates/gc32/_entry.gc32.erb +3 -0
- data/templates/gc32/_entry_attributes.gc32.erb +10 -0
- data/templates/gc32/_immunization.gc32.erb +9 -0
- data/templates/gc32/_insurance_provider.gc32.erb +28 -0
- data/templates/gc32/_medical_equipment.gc32.erb +6 -0
- data/templates/gc32/_medication.gc32.erb +91 -0
- data/templates/{_name.gc32.erb → gc32/_name.gc32.erb} +0 -0
- data/templates/gc32/_organization.gc32.erb +10 -0
- data/templates/gc32/_person_attributes.gc32.erb +7 -0
- data/templates/gc32/_procedure.gc32.erb +9 -0
- data/templates/gc32/_provider.gc32.erb +9 -0
- data/templates/gc32/_result.gc32.erb +12 -0
- data/templates/gc32/_social_history.gc32.erb +6 -0
- data/templates/{_support.gc32.erb → gc32/_support.gc32.erb} +4 -3
- data/templates/gc32/_telecom.gc32.erb +1 -0
- data/templates/gc32/_vital_sign.gc32.erb +4 -0
- data/templates/{record.gc32.erb → gc32/record.gc32.erb} +26 -10
- data/templates/html/_entries_by_encounter.html.erb +2 -2
- data/templates/html/_entries_by_section.html.erb +1 -1
- data/templates/html/_entry.html.erb +16 -21
- data/templates/html/_header.html.erb +1 -1
- data/templates/html/_section.html.erb +1 -1
- data/templates/html/show.html.erb +23 -2
- data/templates/metadata.hdata.erb +3 -3
- metadata +282 -54
- data/lib/health-data-standards/import/c32/allergy_importer.rb +0 -47
- data/lib/health-data-standards/import/c32/medical_equipment_importer.rb +0 -45
- data/lib/health-data-standards/import/c32/procedure_importer.rb +0 -62
- data/lib/health-data-standards/import/c32/result_importer.rb +0 -56
- data/templates/_advance_directive.gc32.erb +0 -8
- data/templates/_allergy.gc32.erb +0 -23
- data/templates/_condition.gc32.erb +0 -9
- data/templates/_encounter.gc32.erb +0 -26
- data/templates/_entry.gc32.erb +0 -14
- data/templates/_immunization.gc32.erb +0 -11
- data/templates/_insurance_provider.gc32.erb +0 -0
- data/templates/_medical_equipment.gc32.erb +0 -7
- data/templates/_medication.gc32.erb +0 -72
- data/templates/_organization.gc32.erb +0 -10
- data/templates/_procedure.gc32.erb +0 -10
- data/templates/_provider.gc32.erb +0 -19
- data/templates/_result.gc32.erb +0 -16
- data/templates/_social_history.gc32.erb +0 -8
- data/templates/_telecom.gc32.erb +0 -1
- data/templates/_vital_sign.gc32.erb +0 -7
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module HQMF1
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class Expression
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include HQMF1::Utilities
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attr_reader :text, :value, :type
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def initialize(entry)
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@entry = entry
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@text = @entry.xpath('./*/cda:derivationExpr').text.strip
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type = attr_val('./*/cda:value/@xsi:type')
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case type
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when 'IVL_PQ'
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@value = Range.new(@entry.xpath('./*/cda:value'))
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when 'PQ'
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@value = Value.new(@entry.xpath('./*/cda:value'))
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when 'ANYNonNull'
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@value = HQMF::AnyValue.new
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else
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raise "Unknown expression value type #{type}"
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end
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@type = match_type
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end
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def match_type
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27
|
+
case @text
|
28
|
+
when /^COUNT(.*)$/
|
29
|
+
"COUNT"
|
30
|
+
when /^MIN(.*)$/
|
31
|
+
"MIN"
|
32
|
+
when /^MAX(.*)$/
|
33
|
+
"MAX"
|
34
|
+
when /^DATEDIFF(.*)$/
|
35
|
+
"DATEDIFF"
|
36
|
+
when /^TIMEDIFF(.*)$/
|
37
|
+
"TIMEDIFF"
|
38
|
+
when /^MEDIAN(.*)$/
|
39
|
+
"MEDIAN"
|
40
|
+
when /^AVG(.*)$/
|
41
|
+
"MEAN"
|
42
|
+
else
|
43
|
+
raise "unknown expression type: #{@text}"
|
44
|
+
end
|
45
|
+
end
|
46
|
+
|
47
|
+
def to_json
|
48
|
+
|
49
|
+
json = build_hash(self, [:text,:type])
|
50
|
+
json[:value] = self.value.to_json if self.value
|
51
|
+
json
|
52
|
+
|
53
|
+
end
|
54
|
+
|
55
|
+
end
|
56
|
+
|
57
|
+
|
58
|
+
end
|
@@ -0,0 +1,61 @@
|
|
1
|
+
module HQMF1
|
2
|
+
# Represents an HQMF population criteria
|
3
|
+
class Observation
|
4
|
+
|
5
|
+
include HQMF1::Utilities
|
6
|
+
|
7
|
+
attr_reader :preconditions, :entry, :doc
|
8
|
+
attr_accessor :id, :hqmf_id, :stratification_id
|
9
|
+
|
10
|
+
# Create a new population criteria from the supplied HQMF entry
|
11
|
+
# @param [Nokogiri::XML::Element] the HQMF entry
|
12
|
+
def initialize(entry, doc)
|
13
|
+
@doc = doc
|
14
|
+
@entry = entry
|
15
|
+
@id = attr_val('cda:observation/cda:id/@root').upcase
|
16
|
+
@preconditions = [Precondition.new(@entry, nil, @doc)]
|
17
|
+
end
|
18
|
+
|
19
|
+
# Get the code for the population criteria
|
20
|
+
# @return [String] the code (e.g. IPP, DEMON, NUMER, DENEX, DENEXCEP)
|
21
|
+
def code
|
22
|
+
HQMF::PopulationCriteria::OBSERV
|
23
|
+
end
|
24
|
+
|
25
|
+
# Get the id for the population criteria, used elsewhere in the HQMF document to
|
26
|
+
# refer to this criteria
|
27
|
+
# @return [String] the id
|
28
|
+
def id
|
29
|
+
@id
|
30
|
+
end
|
31
|
+
|
32
|
+
def title
|
33
|
+
"Measure Observation"
|
34
|
+
end
|
35
|
+
|
36
|
+
def reference
|
37
|
+
nil
|
38
|
+
end
|
39
|
+
|
40
|
+
def to_json
|
41
|
+
|
42
|
+
json = {}
|
43
|
+
self.preconditions.compact.each do |precondition|
|
44
|
+
json[:preconditions] ||= []
|
45
|
+
json[:preconditions] << precondition.to_json
|
46
|
+
end
|
47
|
+
json[:preconditions].each {|p| p[:conjunction] ||= "AND"}
|
48
|
+
|
49
|
+
json[:id] = id
|
50
|
+
json[:title] = title
|
51
|
+
json[:code] = code
|
52
|
+
json[:hqmf_id] = hqmf_id if hqmf_id
|
53
|
+
json[:stratification_id] = stratification_id if stratification_id
|
54
|
+
json[:reference] = reference
|
55
|
+
|
56
|
+
{self.code => json}
|
57
|
+
|
58
|
+
end
|
59
|
+
|
60
|
+
end
|
61
|
+
end
|
@@ -0,0 +1,75 @@
|
|
1
|
+
module HQMF1
|
2
|
+
# Represents an HQMF population criteria
|
3
|
+
class PopulationCriteria
|
4
|
+
|
5
|
+
include HQMF1::Utilities
|
6
|
+
|
7
|
+
attr_reader :preconditions, :entry, :doc
|
8
|
+
attr_accessor :id, :hqmf_id, :stratification_id
|
9
|
+
|
10
|
+
# Create a new population criteria from the supplied HQMF entry
|
11
|
+
# @param [Nokogiri::XML::Element] the HQMF entry
|
12
|
+
def initialize(entry, doc)
|
13
|
+
@doc = doc
|
14
|
+
@entry = entry
|
15
|
+
@id = attr_val('cda:observation/cda:id/@root').upcase
|
16
|
+
@preconditions = @entry.xpath('./*/cda:sourceOf[@typeCode="PRCN"]').collect do |entry|
|
17
|
+
pc = Precondition.new(entry, nil, @doc)
|
18
|
+
if pc.preconditions.length==0 && !pc.comparison && pc.restrictions.length==0
|
19
|
+
nil
|
20
|
+
else
|
21
|
+
pc
|
22
|
+
end
|
23
|
+
end.compact
|
24
|
+
end
|
25
|
+
|
26
|
+
# Get the code for the population criteria
|
27
|
+
# @return [String] the code (e.g. IPP, DEMON, NUMER, DENEX, DENEXCEP)
|
28
|
+
def code
|
29
|
+
value = attr_val('cda:observation/cda:value/@code')
|
30
|
+
# exclusion population criteria has id of DENOM with actionNegationInd of true
|
31
|
+
# special case this to simply handling
|
32
|
+
if attr_val('cda:observation/@actionNegationInd')=='true'
|
33
|
+
value = HQMF::PopulationCriteria::DENEX
|
34
|
+
end
|
35
|
+
value.upcase
|
36
|
+
end
|
37
|
+
|
38
|
+
# Get the id for the population criteria, used elsewhere in the HQMF document to
|
39
|
+
# refer to this criteria
|
40
|
+
# @return [String] the id
|
41
|
+
def id
|
42
|
+
@id
|
43
|
+
end
|
44
|
+
|
45
|
+
def title
|
46
|
+
attr_val('cda:observation/cda:value/@displayName')
|
47
|
+
end
|
48
|
+
|
49
|
+
def reference
|
50
|
+
reference = attr_val('./cda:observation/cda:sourceOf[@typeCode="PRCN"]/cda:observation[@classCode="OBS"]/cda:id/@root')
|
51
|
+
reference = reference.upcase if reference
|
52
|
+
reference
|
53
|
+
end
|
54
|
+
|
55
|
+
def to_json
|
56
|
+
|
57
|
+
json = {}
|
58
|
+
self.preconditions.compact.each do |precondition|
|
59
|
+
json[:preconditions] ||= []
|
60
|
+
json[:preconditions] << precondition.to_json
|
61
|
+
end
|
62
|
+
|
63
|
+
json[:id] = id
|
64
|
+
json[:title] = title
|
65
|
+
json[:code] = code
|
66
|
+
json[:hqmf_id] = hqmf_id if hqmf_id
|
67
|
+
json[:stratification_id] = stratification_id if stratification_id
|
68
|
+
json[:reference] = reference
|
69
|
+
|
70
|
+
{self.code => json}
|
71
|
+
|
72
|
+
end
|
73
|
+
|
74
|
+
end
|
75
|
+
end
|
@@ -0,0 +1,89 @@
|
|
1
|
+
module HQMF1
|
2
|
+
|
3
|
+
class Precondition
|
4
|
+
|
5
|
+
include HQMF1::Utilities
|
6
|
+
|
7
|
+
attr_reader :restrictions, :preconditions, :subset, :expression, :id
|
8
|
+
|
9
|
+
def initialize(entry, parent, doc)
|
10
|
+
@doc = doc
|
11
|
+
@entry = entry
|
12
|
+
@id = attr_val('./*/cda:id/@root')
|
13
|
+
@restrictions = []
|
14
|
+
|
15
|
+
local_subset = attr_val('./cda:subsetCode/@code')
|
16
|
+
if local_subset
|
17
|
+
@subset = local_subset
|
18
|
+
end
|
19
|
+
#@subset = attr_val('./cda:subsetCode/@code')
|
20
|
+
|
21
|
+
local_restrictions = @entry.xpath('./*/cda:sourceOf[@typeCode!="PRCN" and @typeCode!="COMP"]').collect do |entry|
|
22
|
+
Restriction.new(entry, self, @doc)
|
23
|
+
end
|
24
|
+
@restrictions.concat(local_restrictions)
|
25
|
+
|
26
|
+
@expression = Expression.new(@entry) if @entry.at_xpath('./*/cda:derivationExpr')
|
27
|
+
|
28
|
+
@preconditions = @entry.xpath('./*/cda:sourceOf[@typeCode="PRCN"]').collect do |entry|
|
29
|
+
Precondition.new(entry, self, @doc)
|
30
|
+
end
|
31
|
+
end
|
32
|
+
|
33
|
+
# Get the conjunction code, e.g. AND, OR
|
34
|
+
# @return [String] conjunction code
|
35
|
+
def conjunction
|
36
|
+
attr_val('./cda:conjunctionCode/@code')
|
37
|
+
end
|
38
|
+
|
39
|
+
# Return whether the precondition is negated (true) or not (false)
|
40
|
+
def negation
|
41
|
+
if @entry.at_xpath('./cda:act[@actionNegationInd="true"]')
|
42
|
+
is_negation_rationale = (comparison.restrictions.map {|restriction| restriction.type }).include? 'RSON' if comparison
|
43
|
+
if is_negation_rationale
|
44
|
+
false
|
45
|
+
else
|
46
|
+
true
|
47
|
+
end
|
48
|
+
else
|
49
|
+
false
|
50
|
+
end
|
51
|
+
end
|
52
|
+
|
53
|
+
def comparison
|
54
|
+
comparison_def = @entry.at_xpath('./*/cda:sourceOf[@typeCode="COMP"]')
|
55
|
+
if comparison_def
|
56
|
+
data_criteria_id = attr_val('./*/cda:id/@root')
|
57
|
+
@comparison = Comparison.new(data_criteria_id, comparison_def, self, @doc)
|
58
|
+
end
|
59
|
+
end
|
60
|
+
|
61
|
+
def first_comparison
|
62
|
+
if comparison
|
63
|
+
return comparison
|
64
|
+
elsif @preconditions
|
65
|
+
@preconditions.each do |precondition|
|
66
|
+
first = precondition.first_comparison
|
67
|
+
if first
|
68
|
+
return first
|
69
|
+
end
|
70
|
+
end
|
71
|
+
end
|
72
|
+
return nil
|
73
|
+
end
|
74
|
+
|
75
|
+
def to_json
|
76
|
+
|
77
|
+
json = build_hash(self, [:id,:conjunction,:negation,:subset])
|
78
|
+
json[:comparison] = self.comparison.to_json if self.comparison
|
79
|
+
json[:expression] = self.expression.to_json if self.expression
|
80
|
+
json[:preconditions] = json_array(self.preconditions)
|
81
|
+
json[:restrictions] = json_array(self.restrictions)
|
82
|
+
json
|
83
|
+
|
84
|
+
end
|
85
|
+
|
86
|
+
end
|
87
|
+
|
88
|
+
|
89
|
+
end
|
@@ -0,0 +1,65 @@
|
|
1
|
+
module HQMF1
|
2
|
+
# Represents a bound within a HQMF pauseQuantity, has a value, a unit and an
|
3
|
+
# inclusive/exclusive indicator
|
4
|
+
class Value
|
5
|
+
include HQMF1::Utilities
|
6
|
+
|
7
|
+
def initialize(entry)
|
8
|
+
@entry = entry
|
9
|
+
end
|
10
|
+
|
11
|
+
def value
|
12
|
+
attr_val('./@value')
|
13
|
+
end
|
14
|
+
|
15
|
+
def unit
|
16
|
+
attr_val('./@unit')
|
17
|
+
end
|
18
|
+
|
19
|
+
def inclusive?
|
20
|
+
case attr_val('./@inclusive')
|
21
|
+
when 'true'
|
22
|
+
true
|
23
|
+
else
|
24
|
+
false
|
25
|
+
end
|
26
|
+
end
|
27
|
+
|
28
|
+
def to_json
|
29
|
+
build_hash(self, [:value,:unit,:inclusive?])
|
30
|
+
end
|
31
|
+
end
|
32
|
+
|
33
|
+
# Represents a HQMF pauseQuantity which can have low and high bounds
|
34
|
+
class Range
|
35
|
+
include HQMF1::Utilities
|
36
|
+
attr_reader :low, :high
|
37
|
+
|
38
|
+
def initialize(entry)
|
39
|
+
@entry = entry
|
40
|
+
if @entry
|
41
|
+
@low = optional_value('./cda:low')
|
42
|
+
@high = optional_value('./cda:high')
|
43
|
+
end
|
44
|
+
end
|
45
|
+
|
46
|
+
def to_json
|
47
|
+
json = {}
|
48
|
+
json[:low] = self.low.to_json if self.low
|
49
|
+
json[:high] = self.high.to_json if self.high
|
50
|
+
json
|
51
|
+
end
|
52
|
+
|
53
|
+
private
|
54
|
+
|
55
|
+
def optional_value(xpath)
|
56
|
+
value_def = @entry.at_xpath(xpath)
|
57
|
+
if value_def
|
58
|
+
Value.new(value_def)
|
59
|
+
else
|
60
|
+
nil
|
61
|
+
end
|
62
|
+
end
|
63
|
+
|
64
|
+
end
|
65
|
+
end
|
@@ -0,0 +1,160 @@
|
|
1
|
+
module HQMF1
|
2
|
+
# Represents a restriction on the allowable values of a data item
|
3
|
+
class Restriction
|
4
|
+
|
5
|
+
include HQMF1::Utilities
|
6
|
+
|
7
|
+
attr_reader :range, :comparison, :restrictions, :subset, :preconditions, :expression
|
8
|
+
attr_accessor :from_parent
|
9
|
+
|
10
|
+
def initialize(entry, parent, doc)
|
11
|
+
@doc = doc
|
12
|
+
@entry = entry
|
13
|
+
@restrictions = []
|
14
|
+
|
15
|
+
range_def = @entry.at_xpath('./cda:pauseQuantity')
|
16
|
+
if range_def
|
17
|
+
@range = Range.new(range_def)
|
18
|
+
end
|
19
|
+
|
20
|
+
local_restrictions = @entry.xpath('./*/cda:sourceOf[@typeCode!="PRCN" and @typeCode!="COMP"]').collect do |entry|
|
21
|
+
Restriction.new(entry, self, @doc)
|
22
|
+
end
|
23
|
+
|
24
|
+
@restrictions.concat(local_restrictions)
|
25
|
+
|
26
|
+
local_subset = attr_val('./cda:subsetCode/@code')
|
27
|
+
if local_subset
|
28
|
+
@subset = local_subset
|
29
|
+
end
|
30
|
+
|
31
|
+
if @entry.at_xpath('./*/cda:derivationExpr')
|
32
|
+
@expression = Expression.new(@entry)
|
33
|
+
end
|
34
|
+
|
35
|
+
comparison_def = @entry.at_xpath('./*/cda:sourceOf[@typeCode="COMP"]')
|
36
|
+
if comparison_def
|
37
|
+
data_criteria_id = attr_val('./*/cda:id/@root')
|
38
|
+
data_criteria_id = comparison_def.at_xpath('./*/cda:id/@root').value if (data_criteria_id.nil? and comparison_def.at_xpath('./*/cda:id/@root'))
|
39
|
+
@comparison = Comparison.new(data_criteria_id, comparison_def, self, @doc)
|
40
|
+
end
|
41
|
+
|
42
|
+
@preconditions = @entry.xpath('./*/cda:sourceOf[@typeCode="PRCN"]').collect do |entry|
|
43
|
+
# create a dummy parent with a single restriction copied from self minus the
|
44
|
+
# nested preconditions to avoid an infinite loop
|
45
|
+
prior_comparison = nil
|
46
|
+
if parent.class==HQMF1::Precondition
|
47
|
+
prior_comparison = parent.first_comparison
|
48
|
+
else
|
49
|
+
prior_comparison = @comparsion
|
50
|
+
end
|
51
|
+
current_restriction = OpenStruct.new(
|
52
|
+
'range' => @range,
|
53
|
+
'comparison' => prior_comparison,
|
54
|
+
'restrictions' => [],
|
55
|
+
'preconditions' => [],
|
56
|
+
'subset' => @subset,
|
57
|
+
'type' => type,
|
58
|
+
'target_id' => target_id,
|
59
|
+
'field' => field,
|
60
|
+
'field_code' => field_code,
|
61
|
+
'field_time' => field_time,
|
62
|
+
'value' => value)
|
63
|
+
all_restrictions = []
|
64
|
+
all_restrictions.concat @restrictions
|
65
|
+
all_restrictions << current_restriction
|
66
|
+
parent = OpenStruct.new(
|
67
|
+
'restrictions' => all_restrictions,
|
68
|
+
'subset' => @subset
|
69
|
+
)
|
70
|
+
p = Precondition.new(entry, parent, @doc)
|
71
|
+
|
72
|
+
end
|
73
|
+
|
74
|
+
end
|
75
|
+
|
76
|
+
# The type of restriction, e.g. SBS, SBE etc
|
77
|
+
def type
|
78
|
+
attr_val('./@typeCode')
|
79
|
+
end
|
80
|
+
|
81
|
+
# is this type negated? true or false
|
82
|
+
def negation
|
83
|
+
attr_val('./@inversionInd') == "true"
|
84
|
+
end
|
85
|
+
|
86
|
+
# The id of the data criteria or measurement property that the value
|
87
|
+
# will be compared against
|
88
|
+
def target_id
|
89
|
+
attr_val('./*/cda:id/@root')
|
90
|
+
end
|
91
|
+
|
92
|
+
def field
|
93
|
+
attr_val('./cda:observation/cda:code/@displayName')
|
94
|
+
end
|
95
|
+
|
96
|
+
def field_code
|
97
|
+
attr_val('./cda:observation/cda:code/@code') || attr_val('./cda:encounter/cda:participant/cda:roleParticipant/@classCode')
|
98
|
+
end
|
99
|
+
|
100
|
+
def field_time
|
101
|
+
effectiveTime = @entry.at_xpath('./cda:observation/cda:effectiveTime') || @entry.at_xpath('./cda:encounter/cda:participant/cda:roleParticipant/cda:effectiveTime')
|
102
|
+
|
103
|
+
time = nil
|
104
|
+
if effectiveTime
|
105
|
+
time = :start if effectiveTime.at_xpath('./cda:low')
|
106
|
+
time = :end if effectiveTime.at_xpath('./cda:high')
|
107
|
+
end
|
108
|
+
time
|
109
|
+
end
|
110
|
+
|
111
|
+
|
112
|
+
def value
|
113
|
+
value = nil
|
114
|
+
type = attr_val('./cda:observation/cda:value/@xsi:type') || 'CD'
|
115
|
+
case type
|
116
|
+
when 'IVL_PQ'
|
117
|
+
value = HQMF1::Range.new(@entry.xpath('./cda:observation/cda:value'))
|
118
|
+
when 'PQ'
|
119
|
+
value = HQMF1::Value.new(@entry.xpath('./cda:observation/cda:value'))
|
120
|
+
when 'CD'
|
121
|
+
if field && field.downcase == 'status'
|
122
|
+
code = attr_val('./cda:observation/cda:value/@displayName').downcase
|
123
|
+
value = HQMF::Coded.for_single_code('status',code,code)
|
124
|
+
elsif attr_val('./cda:observation/cda:value/@code')
|
125
|
+
oid = attr_val('./cda:observation/cda:value/@code')
|
126
|
+
title = attr_val('./cda:observation/cda:value/@displayName')
|
127
|
+
value = HQMF::Coded.for_code_list(oid,title)
|
128
|
+
elsif attr_val('./cda:encounter/cda:participant/cda:roleParticipant/cda:code/@code')
|
129
|
+
oid = attr_val('./cda:encounter/cda:participant/cda:roleParticipant/cda:code/@code')
|
130
|
+
title = attr_val('./cda:encounter/cda:participant/cda:roleParticipant/cda:code/@displayName')
|
131
|
+
value = HQMF::Coded.for_code_list(oid,title)
|
132
|
+
end
|
133
|
+
when 'ANYNonNull'
|
134
|
+
value = HQMF::AnyValue.new
|
135
|
+
else
|
136
|
+
raise "Unknown restriction value type #{type}"
|
137
|
+
end if type
|
138
|
+
value
|
139
|
+
end
|
140
|
+
|
141
|
+
def to_json
|
142
|
+
return nil if from_parent
|
143
|
+
json = build_hash(self, [:subset,:type,:target_id,:field,:field_code,:from_parent, :negation, :field_time])
|
144
|
+
json[:range] = range.to_json if range
|
145
|
+
if value
|
146
|
+
if value.is_a? String
|
147
|
+
json[:value] = value
|
148
|
+
else
|
149
|
+
json[:value] = value.to_json
|
150
|
+
end
|
151
|
+
end
|
152
|
+
json[:comparison] = comparison.to_json if comparison
|
153
|
+
json[:restrictions] = json_array(self.restrictions)
|
154
|
+
json[:preconditions] = json_array(self.preconditions)
|
155
|
+
json[:expression] = self.expression.to_json if self.expression
|
156
|
+
json
|
157
|
+
end
|
158
|
+
|
159
|
+
end
|
160
|
+
end
|