health-data-standards 0.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/Gemfile +6 -0
- data/README.md +38 -0
- data/Rakefile +7 -0
- data/VERSION +1 -0
- data/lib/health-data-standards.rb +15 -0
- data/lib/health-data-standards/export/c32.rb +14 -0
- data/lib/health-data-standards/export/ccr.rb +375 -0
- data/lib/health-data-standards/export/rendering_context.rb +14 -0
- data/lib/health-data-standards/export/template_helper.rb +35 -0
- data/lib/health-data-standards/export/view_helper.rb +35 -0
- data/lib/health-data-standards/models/entry.rb +51 -0
- data/lib/health-data-standards/models/record.rb +21 -0
- data/templates/_allergies.c32.erb +57 -0
- data/templates/_care_goals.c32.erb +24 -0
- data/templates/_code_with_reference.c32.erb +8 -0
- data/templates/_conditions.c32.erb +61 -0
- data/templates/_encounters.c32.erb +28 -0
- data/templates/_immunizations.c32.erb +41 -0
- data/templates/_medical_equipment.c32.erb +34 -0
- data/templates/_medications.c32.erb +40 -0
- data/templates/_narrative_block.c32.erb +20 -0
- data/templates/_procedures.c32.erb +29 -0
- data/templates/_results.c32.erb +59 -0
- data/templates/_social_history.c32.erb +26 -0
- data/templates/_vital_signs.c32.erb +48 -0
- data/templates/show.c32.erb +103 -0
- metadata +127 -0
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<text>
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<table border="1" width="100%">
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<thead>
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<tr>
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<th>Description</th>
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<th>Codes</th>
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<th>Time</th>
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</tr>
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</thead>
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<tbody>
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<% entries.each_with_index do |entry, i| -%>
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<tr>
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<td ID="<%= section %>-desc-<%= i %>"><%= entry.description %></td>
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<td ID="<%= section %>-code-<%= i %>"><%= entry.codes_to_s %></td>
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<td><%= entry.times_to_s %></td>
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</tr>
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<%- end -%>
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</tbody>
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</table>
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</text>
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<component>
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<!--Surgeries-->
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<section>
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<templateId root="2.16.840.1.113883.10.20.1.12" assigningAuthorityName="HL7 CCD"/>
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<templateId root="2.16.840.1.113883.3.88.11.83.108" assigningAuthorityName="HITSP/C83"/>
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<templateId root="1.3.6.1.4.1.19376.1.5.3.1.3.12" assigningAuthorityName="IHE PCC"/>
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<templateId root="1.3.6.1.4.1.19376.1.5.3.1.3.11" assigningAuthorityName="IHE PCC"/>
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<!--Surgeries section template-->
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<code code="47519-4" codeSystem="2.16.840.1.113883.6.1" codeSystemName="LOINC" displayName="List of surgeries"/>
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<%== render :partial => 'narrative_block', :locals => {:entries => entries, :section => 'procedures'} %>
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<% entries.each_with_index do |entry, i| -%>
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<entry typeCode="DRIV">
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<procedure classCode="PROC" moodCode="EVN">
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<templateId root="2.16.840.1.113883.3.88.11.83.17" assigningAuthorityName="HITSP C83"/>
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<templateId root="2.16.840.1.113883.10.20.1.29" assigningAuthorityName="CCD"/>
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<templateId root="1.3.6.1.4.1.19376.1.5.3.1.4.19" assigningAuthorityName="IHE PCC"/>
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<!-- Procedure activity template -->
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<id root="<%= UUID.generate %>"/>
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<%== render :partial => 'code_with_reference', :locals => {:entry => entry, :i => i, :section => 'procedures'} %>
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<text>
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<reference value="#procedures-desc-<%= i %>"/>
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</text>
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<statusCode code="completed"/>
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<effectiveTime value="<%= Time.at(entry.time).utc.to_formatted_s(:number) %>"/>
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</procedure>
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</entry>
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<% end -%>
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</section>
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</component>
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<component>
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<!--Diagnostic Results-->
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<section>
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<templateId root="2.16.840.1.113883.3.88.11.83.122" assigningAuthorityName="HITSP/C83"/>
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<templateId root="1.3.6.1.4.1.19376.1.5.3.1.3.28" assigningAuthorityName="IHE PCC"/>
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<!--Diagnostic Results section template-->
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<code code="30954-2" codeSystem="2.16.840.1.113883.6.1" codeSystemName="LOINC" displayName="Results"/>
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<title>Diagnostic Results</title>
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<%== render :partial => 'narrative_block', :locals => {:entries => entries, :section => 'results'} %>
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<entry typeCode="DRIV">
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<organizer classCode="BATTERY" moodCode="EVN">
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<templateId root="2.16.840.1.113883.10.20.1.32"/>
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<!--Result organizer template -->
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<id root="<%= UUID.generate %>"/>
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<code nullFlavor="NA"/>
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<statusCode code="completed"/>
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<effectiveTime value="<%= Time.now.utc.to_formatted_s(:number) %>"/>
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<component>
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<procedure classCode="PROC" moodCode="EVN">
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<templateId root="2.16.840.1.113883.3.88.11.83.17" assigningAuthorityName="HITSP C83"/>
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<templateId root="2.16.840.1.113883.10.20.1.29" assigningAuthorityName="CCD"/>
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<templateId root="1.3.6.1.4.1.19376.1.5.3.1.4.19" assigningAuthorityName="IHE PCC"/>
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<id root="<%= UUID.generate %>"/>
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<code nullFlavor="UNK">
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<originalText><reference value="Unknown"/></originalText>
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</code>
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<text>
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<reference value="Unknown"/>
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</text>
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<statusCode code="completed"/>
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<effectiveTime nullFlavor="UNK"/>
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</procedure>
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</component>
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<% entries.each_with_index do |entry, i| -%>
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<component>
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<observation classCode="OBS" moodCode="EVN">
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<templateId root="2.16.840.1.113883.3.88.11.83.15.1" assigningAuthorityName="HITSP C83"/>
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<templateId root="2.16.840.1.113883.10.20.1.31" assigningAuthorityName="CCD"/>
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<templateId root="1.3.6.1.4.1.19376.1.5.3.1.4.13" assigningAuthorityName="IHE PCC"/>
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<!-- Result observation template -->
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<id root="<%= UUID.generate %>"/>
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<%== code_display(entry) %>
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<text>
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<reference value="#results-desc-<%= i %>"/>
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</text>
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<statusCode code="completed"/>
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<effectiveTime value="<%= Time.at(entry.time).utc.to_formatted_s(:number) %>"/>
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<% if entry.value -%>
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<value xsi:type="PQ" value="<%= entry.value["scalar"] %>" <% if entry.value["units"]-%>unit="<%= entry.value["units"] %>"<% end -%>/>
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<% else -%>
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<value xsi:type="PQ" nullFlavor="UNK"/>
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<% end -%>
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</observation>
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</component>
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<% end -%>
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</organizer>
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</entry>
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</section>
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</component>
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<component>
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<!--Social History - Not C32-->
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<section>
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<templateId root="2.16.840.1.113883.3.88.11.83.126" assigningAuthorityName="HITSP/C83"/>
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<templateId root="2.16.840.1.113883.10.20.1.15" assigningAuthorityName="CCD"/>
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<templateId root="1.3.6.1.4.1.19376.1.5.3.1.3.16" assigningAuthorityName="IHE PCC"/>
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<!-- Social history section template -->
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<code code="29762-2" codeSystem="2.16.840.1.113883.6.1"/>
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<title>Social History</title>
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<%== render :partial => 'narrative_block', :locals => {:entries => entries, :section => 'social_history'} %>
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<% entries.each_with_index do |entry, i| -%>
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<entry typeCode="DRIV">
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<observation classCode="OBS" moodCode="EVN">
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<templateId root="2.16.840.1.113883.3.88.11.83.19" assigningAuthorityName="HITSP C83"/>
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<templateId root="2.16.840.1.113883.10.20.1.33" assigningAuthorityName="CCD"/>
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<templateId root="1.3.6.1.4.1.19376.1.5.3.1.4.13.4" assigningAuthorityName="IHE PCC"/>
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<!-- Social history observation template -->
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<id root="<%= UUID.generate %>"/>
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<%== code_display(entry) %>
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<statusCode code="completed"/>
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<effectiveTime value="<%= Time.at(entry.time).utc.to_formatted_s(:number) %>"/>
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</observation>
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</entry>
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<% end -%>
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</section>
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</component>
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<component>
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<!--Vital Signs-->
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<section>
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<templateId root="2.16.840.1.113883.10.20.1.16" assigningAuthorityName="HL7 CCD"/>
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<templateId root="2.16.840.1.113883.3.88.11.83.119" assigningAuthorityName="HITSP/C83"/>
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<templateId root="1.3.6.1.4.1.19376.1.5.3.1.1.5.3.2" assigningAuthorityName="IHE PCC"/>
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<templateId root="1.3.6.1.4.1.19376.1.5.3.1.3.25" assigningAuthorityName="IHE PCC"/>
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<!--Vital Signs section template-->
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<code code="8716-3" codeSystem="2.16.840.1.113883.6.1" codeSystemName="LOINC" displayName="Vital signs"/>
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<title>Vital Signs</title>
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<%== render :partial => 'narrative_block', :locals => {:entries => entries, :section => 'vitals'} %>
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<entry typeCode="DRIV">
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<organizer classCode="CLUSTER" moodCode="EVN">
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<templateId root="2.16.840.1.113883.10.20.1.32" assigningAuthorityName="CCD"/>
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<templateId root="2.16.840.1.113883.10.20.1.35" assigningAuthorityName="CCD"/>
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<templateId root="1.3.6.1.4.1.19376.1.5.3.1.4.13.1" assigningAuthorityName="IHE PCC"/>
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<!-- Vital signs organizer template -->
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<id root="<%= UUID.generate %>"/>
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<code code="46680005" codeSystem="2.16.840.1.113883.6.96" displayName="Vital signs" codeSystemName="SNOMED CT"/>
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<statusCode code="completed"/>
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<effectiveTime value="19991114"/>
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<% entries.each_with_index do |entry, i| -%>
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<component>
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<observation classCode="OBS" moodCode="EVN">
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<templateId root="2.16.840.1.113883.3.88.11.83.14" assigningAuthorityName="HITSP C83"/>
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<templateId root="2.16.840.1.113883.10.20.1.31" assigningAuthorityName="CCD"/>
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<templateId root="1.3.6.1.4.1.19376.1.5.3.1.4.13.2" assigningAuthorityName="IHE PCC"/>
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<templateId root="1.3.6.1.4.1.19376.1.5.3.1.4.13" assigningAuthorityName="IHE PCC"/>
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<!-- Result observation template -->
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<id root="<%= UUID.generate %>"/>
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<%== code_display(entry) %>
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<text>
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<reference value="vitals-desc-<%= i %>"/>
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</text>
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<statusCode code="completed"/>
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<effectiveTime value="<%= Time.at(entry.time).utc.to_formatted_s(:number) %>"/>
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<% if entry.value -%>
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<value xsi:type="PQ" value="<%= entry.value["scalar"] %>" <% if entry.value["units"]-%>unit="<%= entry.value["units"] %>"<% end -%>/>
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<% else -%>
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<value xsi:type="PQ" nullFlavor="UNK"/>
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<% end -%>
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</observation>
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</component>
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<% end -%>
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</organizer>
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</entry>
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</section>
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</component>
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<?xml version="1.0" encoding="UTF-8"?>
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<ClinicalDocument xmlns="urn:hl7-org:v3" xmlns:sdtc="urn:hl7-org:sdtc" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="urn:hl7-org:v3 http://xreg2.nist.gov:8080/hitspValidation/schema/cdar2c32/infrastructure/cda/C32_CDA.xsd">
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<realmCode code="US"/>
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<typeId root="2.16.840.1.113883.1.3" extension="POCD_HD000040"/>
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<templateId root="2.16.840.1.113883.3.27.1776" assigningAuthorityName="CDA/R2"/>
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<templateId root="2.16.840.1.113883.10.20.3" assigningAuthorityName="HL7/CDT Header"/>
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<templateId root="1.3.6.1.4.1.19376.1.5.3.1.1.1" assigningAuthorityName="IHE/PCC"/>
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<templateId root="2.16.840.1.113883.3.88.11.32.1" assigningAuthorityName="HITSP/C32"/>
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<id root="2.16.840.1.113883.3.72" extension="HITSP_C32v2.5_Rev6_16Sections_Entries_MinimalErrors" assigningAuthorityName="NIST Healthcare Project"/>
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<code code="34133-9" displayName="Summarization of episode note" codeSystem="2.16.840.1.113883.6.1" codeSystemName="LOINC"/>
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<title>Cypress C32 Patient Test Record: <%= patient.first %> <%= patient.last %></title>
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<effectiveTime value="<%= Time.now.utc.to_formatted_s(:number) %>"/>
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<confidentialityCode code="N"/>
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<languageCode code="nn-CC"/>
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<recordTarget>
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<patientRole>
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<id root="Cypress" extension="<%= patient.id %>"/>
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<addr use="HP">
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<streetAddressLine>202 Burlington Rd.</streetAddressLine>
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<city>Bedford</city>
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<state>MA</state>
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<postalCode>01730</postalCode>
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</addr>
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<telecom value="tel:+1-781-271-3000"/>
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<patient>
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<name>
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<given><%= patient.first %></given>
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<family><%= patient.last %></family>
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</name>
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<administrativeGenderCode code="<%= patient.gender %>" codeSystem="2.16.840.1.113883.5.1" codeSystemName="HL7 AdministrativeGender"/>
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<birthTime value="<%= Time.at(patient.birthdate).utc.to_formatted_s(:number) %>"/>
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<languageCommunication>
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<templateId root="2.16.840.1.113883.3.88.11.83.2" assigningAuthorityName="HITSP/C83"/>
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<templateId root="1.3.6.1.4.1.19376.1.5.3.1.2.1" assigningAuthorityName="IHE/PCC"/>
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<languageCode code="en-US"/>
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</languageCommunication>
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</patient>
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</patientRole>
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</recordTarget>
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<author>
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<time value="<%= Time.now.utc.to_formatted_s(:number) %>"/>
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<assignedAuthor>
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<id/>
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<addr/>
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45
|
+
<telecom value="tel:+1-781-271-3000"/>
|
|
46
|
+
<assignedPerson>
|
|
47
|
+
<name>Auto Generated</name>
|
|
48
|
+
</assignedPerson>
|
|
49
|
+
</assignedAuthor>
|
|
50
|
+
</author>
|
|
51
|
+
<custodian>
|
|
52
|
+
<assignedCustodian>
|
|
53
|
+
<representedCustodianOrganization>
|
|
54
|
+
<id/>
|
|
55
|
+
<name>Cypress</name>
|
|
56
|
+
<telecom value="tel:+1-781-271-3000"/>
|
|
57
|
+
<addr>
|
|
58
|
+
<streetAddressLine>202 Burlington Rd.</streetAddressLine>
|
|
59
|
+
<city>Bedford</city>
|
|
60
|
+
<state>MA</state>
|
|
61
|
+
<postalCode>01730</postalCode>
|
|
62
|
+
</addr>
|
|
63
|
+
</representedCustodianOrganization>
|
|
64
|
+
</assignedCustodian>
|
|
65
|
+
</custodian>
|
|
66
|
+
<component>
|
|
67
|
+
<structuredBody>
|
|
68
|
+
<% if patient.allergies.present? -%>
|
|
69
|
+
<%== render :partial => 'allergies', :locals => {:entries => patient.allergies} %>
|
|
70
|
+
<% end -%>
|
|
71
|
+
<% if patient.medications.present? -%>
|
|
72
|
+
<%== render :partial => 'medications', :locals => {:entries => patient.medications} %>
|
|
73
|
+
<% end -%>
|
|
74
|
+
<% if patient.encounters.present? -%>
|
|
75
|
+
<%== render :partial => 'encounters', :locals => {:entries => patient.encounters} %>
|
|
76
|
+
<% end -%>
|
|
77
|
+
<% if patient.conditions.present? -%>
|
|
78
|
+
<%== render :partial => 'conditions', :locals => {:entries => patient.conditions} %>
|
|
79
|
+
<% end -%>
|
|
80
|
+
<% if patient.vital_signs.present? -%>
|
|
81
|
+
<%== render :partial => 'vital_signs', :locals => {:entries => patient.vital_signs} %>
|
|
82
|
+
<% end -%>
|
|
83
|
+
<% if patient.procedures.present? -%>
|
|
84
|
+
<%== render :partial => 'procedures', :locals => {:entries => patient.procedures} %>
|
|
85
|
+
<% end -%>
|
|
86
|
+
<% if patient.results.present? -%>
|
|
87
|
+
<%== render :partial => 'results', :locals => {:entries => patient.results} %>
|
|
88
|
+
<% end -%>
|
|
89
|
+
<% if patient.immunizations.present? -%>
|
|
90
|
+
<%== render :partial => 'immunizations', :locals => {:entries => patient.immunizations} %>
|
|
91
|
+
<% end -%>
|
|
92
|
+
<% if patient.care_goals.present? -%>
|
|
93
|
+
<%== render :partial => 'care_goals', :locals => {:entries => patient.care_goals} %>
|
|
94
|
+
<% end -%>
|
|
95
|
+
<% if patient.social_history.present? -%>
|
|
96
|
+
<%== render :partial => 'social_history', :locals => {:entries => patient.social_history} %>
|
|
97
|
+
<% end -%>
|
|
98
|
+
<% if patient.medical_equipment.present? -%>
|
|
99
|
+
<%== render :partial => 'medical_equipment', :locals => {:entries => patient.medical_equipment} %>
|
|
100
|
+
<% end -%>
|
|
101
|
+
</structuredBody>
|
|
102
|
+
</component>
|
|
103
|
+
</ClinicalDocument>
|
metadata
ADDED
|
@@ -0,0 +1,127 @@
|
|
|
1
|
+
--- !ruby/object:Gem::Specification
|
|
2
|
+
name: health-data-standards
|
|
3
|
+
version: !ruby/object:Gem::Version
|
|
4
|
+
version: 0.1.0
|
|
5
|
+
prerelease:
|
|
6
|
+
platform: ruby
|
|
7
|
+
authors:
|
|
8
|
+
- Andy Gregorowicz
|
|
9
|
+
autorequire:
|
|
10
|
+
bindir: bin
|
|
11
|
+
cert_chain: []
|
|
12
|
+
date: 2011-11-22 00:00:00.000000000Z
|
|
13
|
+
dependencies:
|
|
14
|
+
- !ruby/object:Gem::Dependency
|
|
15
|
+
name: erubis
|
|
16
|
+
requirement: &70116647230460 !ruby/object:Gem::Requirement
|
|
17
|
+
none: false
|
|
18
|
+
requirements:
|
|
19
|
+
- - ~>
|
|
20
|
+
- !ruby/object:Gem::Version
|
|
21
|
+
version: '2.6'
|
|
22
|
+
type: :runtime
|
|
23
|
+
prerelease: false
|
|
24
|
+
version_requirements: *70116647230460
|
|
25
|
+
- !ruby/object:Gem::Dependency
|
|
26
|
+
name: mongoid
|
|
27
|
+
requirement: &70116647229520 !ruby/object:Gem::Requirement
|
|
28
|
+
none: false
|
|
29
|
+
requirements:
|
|
30
|
+
- - ~>
|
|
31
|
+
- !ruby/object:Gem::Version
|
|
32
|
+
version: 2.2.0
|
|
33
|
+
type: :runtime
|
|
34
|
+
prerelease: false
|
|
35
|
+
version_requirements: *70116647229520
|
|
36
|
+
- !ruby/object:Gem::Dependency
|
|
37
|
+
name: uuid
|
|
38
|
+
requirement: &70116647228380 !ruby/object:Gem::Requirement
|
|
39
|
+
none: false
|
|
40
|
+
requirements:
|
|
41
|
+
- - ~>
|
|
42
|
+
- !ruby/object:Gem::Version
|
|
43
|
+
version: 2.3.4
|
|
44
|
+
type: :runtime
|
|
45
|
+
prerelease: false
|
|
46
|
+
version_requirements: *70116647228380
|
|
47
|
+
- !ruby/object:Gem::Dependency
|
|
48
|
+
name: quality-measure-engine
|
|
49
|
+
requirement: &70116647227220 !ruby/object:Gem::Requirement
|
|
50
|
+
none: false
|
|
51
|
+
requirements:
|
|
52
|
+
- - ~>
|
|
53
|
+
- !ruby/object:Gem::Version
|
|
54
|
+
version: 1.0.0
|
|
55
|
+
type: :runtime
|
|
56
|
+
prerelease: false
|
|
57
|
+
version_requirements: *70116647227220
|
|
58
|
+
- !ruby/object:Gem::Dependency
|
|
59
|
+
name: builder
|
|
60
|
+
requirement: &70116647226080 !ruby/object:Gem::Requirement
|
|
61
|
+
none: false
|
|
62
|
+
requirements:
|
|
63
|
+
- - ~>
|
|
64
|
+
- !ruby/object:Gem::Version
|
|
65
|
+
version: 2.1.2
|
|
66
|
+
type: :runtime
|
|
67
|
+
prerelease: false
|
|
68
|
+
version_requirements: *70116647226080
|
|
69
|
+
description: A library for generating and consuming various healthcare related formats.
|
|
70
|
+
This includes HITSP C32, ASTM CCR and PQRI.
|
|
71
|
+
email: talk@projectpophealth.org
|
|
72
|
+
executables: []
|
|
73
|
+
extensions: []
|
|
74
|
+
extra_rdoc_files: []
|
|
75
|
+
files:
|
|
76
|
+
- lib/health-data-standards/export/c32.rb
|
|
77
|
+
- lib/health-data-standards/export/ccr.rb
|
|
78
|
+
- lib/health-data-standards/export/rendering_context.rb
|
|
79
|
+
- lib/health-data-standards/export/template_helper.rb
|
|
80
|
+
- lib/health-data-standards/export/view_helper.rb
|
|
81
|
+
- lib/health-data-standards/models/entry.rb
|
|
82
|
+
- lib/health-data-standards/models/record.rb
|
|
83
|
+
- lib/health-data-standards.rb
|
|
84
|
+
- templates/_allergies.c32.erb
|
|
85
|
+
- templates/_care_goals.c32.erb
|
|
86
|
+
- templates/_code_with_reference.c32.erb
|
|
87
|
+
- templates/_conditions.c32.erb
|
|
88
|
+
- templates/_encounters.c32.erb
|
|
89
|
+
- templates/_immunizations.c32.erb
|
|
90
|
+
- templates/_medical_equipment.c32.erb
|
|
91
|
+
- templates/_medications.c32.erb
|
|
92
|
+
- templates/_narrative_block.c32.erb
|
|
93
|
+
- templates/_procedures.c32.erb
|
|
94
|
+
- templates/_results.c32.erb
|
|
95
|
+
- templates/_social_history.c32.erb
|
|
96
|
+
- templates/_vital_signs.c32.erb
|
|
97
|
+
- templates/show.c32.erb
|
|
98
|
+
- Gemfile
|
|
99
|
+
- README.md
|
|
100
|
+
- Rakefile
|
|
101
|
+
- VERSION
|
|
102
|
+
homepage: http://barrel.mitre.org/health-data-standards
|
|
103
|
+
licenses: []
|
|
104
|
+
post_install_message:
|
|
105
|
+
rdoc_options: []
|
|
106
|
+
require_paths:
|
|
107
|
+
- lib
|
|
108
|
+
required_ruby_version: !ruby/object:Gem::Requirement
|
|
109
|
+
none: false
|
|
110
|
+
requirements:
|
|
111
|
+
- - ! '>='
|
|
112
|
+
- !ruby/object:Gem::Version
|
|
113
|
+
version: '0'
|
|
114
|
+
required_rubygems_version: !ruby/object:Gem::Requirement
|
|
115
|
+
none: false
|
|
116
|
+
requirements:
|
|
117
|
+
- - ! '>='
|
|
118
|
+
- !ruby/object:Gem::Version
|
|
119
|
+
version: '0'
|
|
120
|
+
requirements: []
|
|
121
|
+
rubyforge_project:
|
|
122
|
+
rubygems_version: 1.8.10
|
|
123
|
+
signing_key:
|
|
124
|
+
specification_version: 3
|
|
125
|
+
summary: A library for generating and consuming various healthcare related formats.
|
|
126
|
+
test_files: []
|
|
127
|
+
has_rdoc:
|