health-data-standards 0.1.0

data/Gemfile

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+source "http://rubygems.org"
+
+gemspec :development_group => :test
+
+gem 'rake'
+gem 'pry'

data/README.md

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+This is a project to generate and consume HITSP C32, ASTM CCR and PQRI
+
+Environment
+===========
+
+This project currently uses Ruby 1.9.2 and is built using [Bundler](http://gembundler.com/). To get all of the dependencies for the project, first install bundler:
+
+    gem install bundler
+
+Then run bundler to grab all of the necessary gems:
+
+    bundle install
+
+The Quality Measure engine relies on a MongoDB [MongoDB](http://www.mongodb.org/) running a minimum of version 1.8.* or higher.  To get and install Mongo refer to:
+
+    http://www.mongodb.org/display/DOCS/Quickstart
+
+Project Practices
+=================
+
+Please try to follow our [Coding Style Guides](http://github.com/eedrummer/styleguide). Additionally, we will be using git in a pattern similar to [Vincent Driessen's workflow](http://nvie.com/posts/a-successful-git-branching-model/). While feature branches are encouraged, they are not required to work on the project.
+
+License
+=======
+
+Copyright 2011 The MITRE Corporation
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+    http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.

data/Rakefile

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+require 'rake/testtask'
+
+Rake::TestTask.new do |t|
+  t.libs << "test"
+  t.test_files = FileList['test/**/*_test.rb']
+  t.verbose = true
+end

data/VERSION

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+0.1.0

data/lib/health-data-standards.rb

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+require 'erubis'
+require 'active_support'
+require 'mongoid'
+require 'uuid'
+require 'quality-measure-engine'
+require 'builder'
+
+require_relative 'health-data-standards/export/template_helper'
+require_relative 'health-data-standards/export/view_helper'
+require_relative 'health-data-standards/export/rendering_context'
+require_relative 'health-data-standards/export/c32'
+require_relative 'health-data-standards/export/ccr'
+
+require_relative 'health-data-standards/models/entry'
+require_relative 'health-data-standards/models/record'

data/lib/health-data-standards/export/c32.rb

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+module HealthDataStandards
+  module Export
+    module C32
+      include TemplateHelper
+
+      def export(patient)
+        self.template_format = "c32"
+        render(:template => 'show', :locals => {:patient => patient})
+      end
+
+      extend self
+    end
+  end
+end

data/lib/health-data-standards/export/ccr.rb

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+module HealthDataStandards
+  module Export
+    module CCR
+      # Builds a CCR XML document representing the patient.
+      #
+      # @return [Builder::XmlMarkup] CCR XML representation of patient data
+      def export(patient)
+        xml = Builder::XmlMarkup.new(:indent => 2)
+        xml.ContinuityOfCareRecord("xmlns:xsi" => "http://www.w3.org/2001/XMLSchema-instance",
+                                   "xsi:schemaLocation" => "urn:astm-org:CCR CCR_20051109.xsd http://www.w3.org/2001/XMLSchema xmldsig-core-schema.xsd",
+                                   "xmlns" => "urn:astm-org:CCR") do
+          xml.CCRDocumentObjectID(patient.id)
+          xml.Language do
+            xml.Text("English")
+          end
+          xml.Version("V1.0")
+          xml.DateTime do
+            #TODO: Need to fix this and not be a hard-coded value
+            xml.ExactDateTime(Time.now.xmlschema)
+          end
+          xml.Patient do 
+            xml.ActorID(patient.id)
+          end
+          xml.From do
+            xml.ActorLink do
+              xml.ActorID("AA0002")
+            end
+          end
+          to_ccr_purpose(xml)
+          xml.body do
+            to_ccr_problems(xml, patient)
+            to_ccr_vitals(xml, patient)
+            to_ccr_results(xml, patient)
+            to_ccr_encounters(xml, patient)
+            to_ccr_medications(xml, patient)
+            to_ccr_immunizations(xml, patient)
+            to_ccr_procedures(xml, patient)
+            to_ccr_allergies(xml, patient)
+          end
+          to_ccr_actors(xml, patient)
+        end
+      end
+
+      extend self
+
+      private
+
+      def code_section(xml, codes)
+        xml.Code do
+          if codes.present?
+            codes.each_pair do |code_set, coded_values|
+              coded_values.each do |coded_value|
+                xml.Value(coded_value)
+                xml.CodingSystem(code_set)
+                #TODO: Need to fix this and not be a hard-coded value
+                xml.Version("2005")
+              end
+            end
+          end
+        end
+      end
+
+      def active_status_and_source(xml, patient)
+        xml.Status do
+          xml.Text("Active")
+        end
+        xml.Source do
+          xml.Actor do
+            xml.ActorID(patient.id)
+          end
+        end
+      end
+
+      # Builds the XML snippet for the problems section inside the CCR standard
+      #
+      # @return [Builder::XmlMarkup] CCR XML representation of patient data
+      def to_ccr_problems(xml, patient)
+        if patient.conditions.present?
+          xml.Problems do
+            patient.conditions.each_with_index do |condition, index|
+              xml.Problem do
+                xml.CCRDataObjectID("PR000#{index + 1}")
+                xml.DateTime do
+                  xml.Type do
+                    xml.Text("Start date")
+                  end
+                  #time
+                  xml.ExactDateTime(convert_to_ccr_time_string(condition.time))
+                end
+                xml.Type do
+                  #TODO: Need to fix this and not be a hard-coded value
+                  xml.Text("Diagnosis")
+                end
+                xml.Description do
+                  xml.Text(condition.description)
+                  code_section(xml, condition.codes)
+                end
+                active_status_and_source(xml, patient)
+              end
+            end
+          end
+        end
+      end
+
+      # Builds the XML snippet for the encounters section inside the CCR standard
+      #
+      # @return [Builder::XmlMarkup] CCR XML representation of patient data
+      def to_ccr_encounters(xml, patient)
+        if patient.encounters.present?
+          xml.Encounters do
+            patient.encounters.each_with_index do |encounter, index|
+              xml.Encounter do
+                xml.CCRDataObjectID("EN000#{index + 1}")
+                xml.DateTime do
+                  xml.Type do
+                    xml.Text("Encounter Date")
+                  end
+                  #time
+                  xml.ExactDateTime(convert_to_ccr_time_string(encounter.time))
+                end
+                xml.Description do
+                  xml.Text(encounter.description)
+                  code_section(xml, encounter.codes)
+                end
+                active_status_and_source(xml, patient)
+              end
+            end
+          end
+        end
+      end
+
+      # Builds the XML snippet for the vitals section inside the CCR standard
+      #
+      # @return [Builder::XmlMarkup] CCR XML representation of patient data
+      def to_ccr_vitals(xml, patient)
+        if patient.vital_signs.present?
+          xml.VitalSigns do
+            patient.vital_signs.each_with_index do |vital_sign, index|
+              xml.Result do
+                xml.CCRDataObjectID("VT000#{index + 1}")
+                xml.DateTime do
+                  xml.Type do
+                    xml.Text("Start date")
+                  end
+                  #time
+                  xml.ExactDateTime(convert_to_ccr_time_string(vital_sign.time))
+                end
+                xml.Description do
+                  xml.Text(vital_sign.description)
+                  code_section(xml, vital_sign.codes)
+                end
+              end
+            end
+          end
+        end
+      end
+
+      # Builds the XML snippet for the medications section inside the CCR standard
+      #
+      # @return [Builder::XmlMarkup] CCR XML representation of patient data
+      def to_ccr_medications(xml, patient)
+        if patient.medications.present?
+          xml.Medications do
+            patient.medications.each_with_index do |medication, index|
+              xml.Medication do
+                xml.CCRDataObjectID("MD000#{index + 1}")
+                xml.DateTime do
+                  xml.Type do
+                    xml.Text("Prescription Date")
+                  end
+                  #time
+                  xml.ExactDateTime(convert_to_ccr_time_string(medication.time))
+                end
+                xml.Type do
+                  xml.Text("Medication")
+                end
+                active_status_and_source(xml, patient)
+                xml.Product do
+                  xml.ProductName do
+                    xml.Text(medication.description)
+                  end
+                  xml.BrandName do
+                    xml.Text(medication.description)
+                    code_section(xml, medication.codes)
+                  end
+                end
+              end
+            end
+          end
+        end
+      end
+
+      # Builds the XML snippet for the medications section inside the CCR standard
+      #
+      # @return [Builder::XmlMarkup] CCR XML representation of patient data
+      def to_ccr_immunizations(xml, patient)
+        if patient.immunizations.present?
+          xml.Immunizations do
+            patient.immunizations.each_with_index do |immunization, index|
+              xml.Immunization do
+                xml.CCRDataObjectID("IM000#{index + 1}")
+                xml.DateTime do
+                  xml.Type do
+                    xml.Text("Prescription Date")
+                  end
+                  #time
+                  xml.ExactDateTime(convert_to_ccr_time_string(immunization.time))
+                end
+                xml.Type do
+                  xml.Text("Immunization")
+                end
+                active_status_and_source(xml, patient)
+                xml.Product do
+                  xml.ProductName do
+                    xml.Text(immunization.description)
+                  end
+                  xml.BrandName do
+                    xml.Text(immunization.description)
+                    code_section(xml, immunization.codes)
+                  end
+                end
+              end
+            end
+          end
+        end
+      end
+
+      # Builds the XML snippet for the lab section inside the CCR standard
+      #
+      # @return [Builder::XmlMarkup] CCR XML representation of patient data
+      def to_ccr_results(xml, patient)
+        if patient.results.present?
+          xml.Results do
+            patient.results.each_with_index do |lab_result, index|
+              xml.Result do
+                xml.CCRDataObjectID("LB000#{index + 1}")
+                xml.DateTime do
+                  xml.Type do
+                    xml.Text("Start date")
+                  end
+                  #time
+                  xml.ExactDateTime(convert_to_ccr_time_string(lab_result.time))
+                end
+                xml.Description do
+                  xml.Text(lab_result.description)
+                  code_section(xml, lab_result.codes)
+                end
+              end
+            end
+          end
+        end
+      end
+
+      # Builds the XML snippet for the procedures section inside the CCR standard
+      #
+      # @return [Builder::XmlMarkup] CCR XML representation of patient data
+      def to_ccr_procedures(xml, patient)
+        if patient.procedures.present?
+          xml.Procedures do
+            patient.procedures.each_with_index do |procedure, index|
+              xml.Procedure do
+                xml.CCRDataObjectID("PR000#{index + 1}")
+                xml.DateTime do
+                  xml.Type do
+                    xml.Text("Service date")
+                  end
+                  #time
+                  xml.ExactDateTime(convert_to_ccr_time_string(procedure.time))
+                end
+                xml.Description do
+                  xml.Text(procedure.description)
+                  code_section(xml, procedure.codes)
+                end
+                xml.Status do
+                  xml.Text("Active")
+                end
+              end
+            end
+          end
+        end
+      end
+
+      def to_ccr_allergies(xml, patient)
+        if patient.allergies.present?
+          xml.Alerts do
+            patient.allergies.each_with_index do |allergy, index|
+              xml.Alert do
+                xml.CCRDataObjectID("AL000#{index + 1}")
+                xml.DateTime do
+                  xml.Type do
+                    xml.Text("Initial Occurrence")
+                  end
+                  #time
+                  xml.ExactDateTime(convert_to_ccr_time_string(allergy.time))
+                end
+                xml.Type do
+                  xml.Text("Allergy")
+                end
+                xml.Description do
+                  xml.Text(allergy.description)
+                  code_section(xml, allergy.codes)
+                end
+                xml.Status do
+                  xml.Text("Current")
+                end
+              end
+            end
+          end
+        end
+      end
+
+      # Builds the XML snippet for a actors section inside the CCR standard
+      #
+      # @return [Builder::XmlMarkup] CCR XML representation of patient data
+      def to_ccr_actors(xml, patient)
+        xml.Actors do
+          xml.Actor do
+            xml.ActorObjectID("AA0001")
+            xml.Person do
+              xml.Name do
+                xml.CurrentName do
+                  xml.Given(patient.first)
+                  xml.Family(patient.last)
+                end
+              end
+            end
+            xml.DateOfBirth do
+              xml.ExactDateTime(convert_to_ccr_time_string(patient.birthdate))
+                if (patient.gender)
+                xml.Gender do
+                  if (patient.gender.upcase == "M")
+                    xml.Text("Male")
+                  elsif (patient.gender.upcase == "F")
+                    xml.Text("Female")
+                  else
+                    xml.Text("Undifferentiated")
+                  end
+                end
+              end
+            end
+          end
+        end
+      end
+
+      # Builds the XML snippet for a purpose section inside the CCR standard
+      #
+      # @return [Builder::XmlMarkup] CCR XML representation of patient data
+      def to_ccr_purpose(xml)
+        xml.Purpose do
+          xml.Description do
+            xml.Text("Cypress Test Patient CCR XML Record")
+          end
+          xml.Indications do
+            xml.Indication do
+              xml.Source do
+                xml.Actor do
+                  xml.ActorID("AA0002")
+                end
+              end
+              xml.InternalCCRLink do
+                xml.LinkID
+              end
+            end
+          end
+        end
+      end
+
+      def convert_to_ccr_time_string(time)
+        converted_time = Time.at(time)
+        converted_time.strftime("%Y-%m-%dT%H:%M:%SZ")
+      end
+
+    end
+  end
+end